Clone Information

BLAST Search Result

Clone Name	rbaal29a05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_450193.1\| Oryza sativa (japonica cultivar-group), mRNA	375	e-100
2	dbj\|AK072690.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	375	e-100
3	gb\|AY108424.1\| Zea mays PCO149843 mRNA sequence	299	6e-78
4	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
5	dbj\|AP006548.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
6	ref\|XM_463904.1\| Oryza sativa (japonica cultivar-group), mRNA	78	4e-11
7	dbj\|AK103704.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	4e-11
8	dbj\|AK060220.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	78	4e-11
9	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	4e-05
10	dbj\|AP004078.3\| Oryza sativa (japonica cultivar-group) genomic D...	58	4e-05
11	dbj\|AP005851.2\| Oryza sativa (japonica cultivar-group) genomic D...	58	4e-05
12	gb\|AY347832.1\| Malus x domestica clone 17-4 protein kinase mRNA,...	48	0.037
13	emb\|CR962130.2\| Medicago truncatula chromosome 5 clone mte1-63h2...	46	0.15
14	gb\|AC102152.12\| Mus musculus chromosome 7, clone RP23-314H9, com...	44	0.58
15	emb\|CR406198.1\| Gallus gallus finished cDNA, clone ChEST856c6	44	0.58
16	gb\|AC122785.17\| Mus musculus chromosome 3, clone RP24-247G11, co...	42	2.3
17	dbj\|AP001838.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	42	2.3
18	gb\|AF081803.1\|AF081803 Xenopus laevis non-receptor protein tyros...	42	2.3
19	gb\|AC165257.2\| Mus musculus BAC clone RP23-162D3 from chromosome...	42	2.3
20	gb\|AC123624.13\| Mus musculus chromosome 16, clone RP23-133E12, c...	40	9.0
21	gb\|AC117647.12\| Mus musculus chromosome 16, clone RP23-244M7, co...	40	9.0
22	ref\|XM_677376.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	9.0
23	ref\|XM_675477.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	9.0
24	gb\|AC125379.4\| Mus musculus BAC clone RP23-53B19 from chromosome...	40	9.0
25	gb\|AC123954.4\| Mus musculus BAC clone RP23-249L6 from 13, comple...	40	9.0
26	gb\|AC160978.4\| Mus musculus BAC clone RP23-426B17 from chromosom...	40	9.0
27	emb\|AL391002.9\| Human DNA sequence from clone RP11-490H23 on chr...	40	9.0
28	emb\|AL357312.8\| Human DNA sequence from clone RP11-390F10 on chr...	40	9.0
29	gb\|AC145127.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.0
30	emb\|AL669912.7\| Mouse DNA sequence from clone RP23-147K24 on chr...	40	9.0
31	gb\|AC114267.2\| Homo sapiens chromosome 19 clone LLNLR_222F11, co...	40	9.0
32	dbj\|AB108686.1\| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgp...	40	9.0
33	dbj\|AB108685.1\| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgp...	40	9.0
34	gb\|AC113410.2\| Homo sapiens chromosome 5 clone RP11-485M7, compl...	40	9.0
35	gb\|AC107058.4\| Homo sapiens BAC clone RP11-633G11 from 4, comple...	40	9.0
36	gb\|AC011537.8\| Homo sapiens chromosome 19 clone LLNLR-249E10, co...	40	9.0
37	gb\|AC068654.2\| Genomic Sequence For Oryza sativa (japonica culti...	40	9.0
38	gb\|AC159023.4\| Pan troglodytes BAC clone CH251-506L16 from chrom...	40	9.0
39	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
40	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
41	gb\|AC108016.5\| Homo sapiens BAC clone RP13-1015A13 from 4, compl...	40	9.0
42	gb\|AC010883.8\| Homo sapiens BAC clone RP11-339H12 from 2, comple...	40	9.0
43	gb\|AE014133.1\| Streptococcus mutans UA159, complete genome	40	9.0
44	dbj\|AP006048.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
45	dbj\|BS000035.1\| Pan troglodytes chromosome 22 clone:PTB-089G12, ...	40	9.0
46	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.0
47	gb\|AC138328.3\| Mus musculus BAC clone RP23-378F20 from 1, comple...	40	9.0
48	dbj\|AB010970.1\| Streptococcus mutans rmlD, rgpAc, rgpBc, rgpCc, ...	40	9.0

>ref|XM_450193.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1812

 Score =  375 bits (189), Expect = e-100
 Identities = 285/317 (89%)
 Strand = Plus / Minus

                                                                        
Query: 342  ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 401
            |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 1812 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 1753

                                                                        
Query: 402  tccgtcgtgctcatctccaacctcctctgctattttcttaagagcttctaatatttcgga 461
            ||| || |||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||
Sbjct: 1752 tccatcatgctcatcaccaacctcctctgctattctctgaagagtttctaatatttcaga 1693

                                                                        
Query: 462  gaaatctggcctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctt 521
            ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |  || ||
Sbjct: 1692 gaaatctggtctttcagcaggctcctgttgccaacatttctgaagaagctcagaaagttt 1633

                                                                        
Query: 522  tgcatgcgcattttttggtattgtaggccgcaaccccttctgaaccacacctacagctgc 581
            |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1632 tgcatgagcattttttggtattgtaggccgtaatcccttctgaaccacacctacagctgc 1573

                                                                        
Query: 582  ttgtaatggtgtcaggtactcataaggaatcttcccagtgagcagttcccacaacaaaat 641
            |||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct: 1572 ttgtaatggtgtcaggtactcataaggaatcttccctgtgagcagctcccacatcaaaat 1513

                             
Query: 642  tccaaaactaaaaacat 658
            |||||||||||||||||
Sbjct: 1512 tccaaaactaaaaacat 1496

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>dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139F03, full
            insert sequence
          Length = 2263

 Score =  375 bits (189), Expect = e-100
 Identities = 285/317 (89%)
 Strand = Plus / Minus

                                                                        
Query: 342  ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 401
            |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 1845 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 1786

                                                                        
Query: 402  tccgtcgtgctcatctccaacctcctctgctattttcttaagagcttctaatatttcgga 461
            ||| || |||||||| |||||||||||||||||| ||| ||||| |||||||||||| ||
Sbjct: 1785 tccatcatgctcatcaccaacctcctctgctattctctgaagagtttctaatatttcaga 1726

                                                                        
Query: 462  gaaatctggcctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctt 521
            ||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |  || ||
Sbjct: 1725 gaaatctggtctttcagcaggctcctgttgccaacatttctgaagaagctcagaaagttt 1666

                                                                        
Query: 522  tgcatgcgcattttttggtattgtaggccgcaaccccttctgaaccacacctacagctgc 581
            |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1665 tgcatgagcattttttggtattgtaggccgtaatcccttctgaaccacacctacagctgc 1606

                                                                        
Query: 582  ttgtaatggtgtcaggtactcataaggaatcttcccagtgagcagttcccacaacaaaat 641
            |||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct: 1605 ttgtaatggtgtcaggtactcataaggaatcttccctgtgagcagctcccacatcaaaat 1546

                             
Query: 642  tccaaaactaaaaacat 658
            |||||||||||||||||
Sbjct: 1545 tccaaaactaaaaacat 1529

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>gb|AY108424.1| Zea mays PCO149843 mRNA sequence
          Length = 1330

 Score =  299 bits (151), Expect = 6e-78
 Identities = 268/307 (87%)
 Strand = Plus / Minus

                                                                        
Query: 352  cgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctttccgtcgtgc 411
            |||||||||| || ||||||||| ||||||||  || ||||||||||||| || ||||||
Sbjct: 1179 cgccccctcaaagccgaaaagaaaccacccagtgttctgtccttgtgcttcccatcgtgc 1120

                                                                        
Query: 412  tcatctccaacctcctctgctattttcttaagagcttctaatatttcggagaaatctggc 471
            || ||||| ||||||||||||||| ||| ||||| |||||||||||||||||| ||||| 
Sbjct: 1119 tcctctccgacctcctctgctattctctgaagagtttctaatatttcggagaagtctggt 1060

                                                                        
Query: 472  ctttcagcagggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgca 531
            ||||  | ||||||||||||||| || |||||||||||||| |  |||||||| || | |
Sbjct: 1059 ctttgggtagggtcctgctgccagcatttctgaagaagctcggaaagctttgcgtgagta 1000

                                                                        
Query: 532  ttttttggtattgtaggccgcaaccccttctgaaccacacctacagctgcttgtaatggt 591
            |  ||||| ||||||||||| || |||||||| |||||||| ||||| ||||||| ||| 
Sbjct: 999  tgctttggaattgtaggccgtaatcccttctgcaccacaccaacagcggcttgtagtgga 940

                                                                        
Query: 592  gtcaggtactcataaggaatcttcccagtgagcagttcccacaacaaaattccaaaacta 651
            |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct: 939  gtcaggtactcataaggaatcttccctgtgagtagttcccacatcaaaattccaaaacta 880

                   
Query: 652  aaaacat 658
            |||||||
Sbjct: 879  aaaacat 873

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Minus

                                                                            
Query: 420      aacctcctctgctattttcttaagagcttctaatatttcggagaaatctggcctttcagc 479
                |||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 21193383 aacctcctctgctattctctgaagagtttctaatatttcagagaaatctggtctttcagc 21193324

                                                                            
Query: 480      agggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgcattttttgg 539
                ||| ||||| |||||||| |||||||||||||| |  || |||||||| |||||||||||
Sbjct: 21193323 aggctcctgttgccaacatttctgaagaagctcagaaagttttgcatgagcattttttgg 21193264

                            
Query: 540      tattgtaggccg 551
                ||||||||||||
Sbjct: 21193263 tattgtaggccg 21193252



 Score =  113 bits (57), Expect = 7e-22
 Identities = 57/57 (100%)
 Strand = Plus / Minus

                                                                         
Query: 557      ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatct 613
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21192767 ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatct 21192711



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                               
Query: 612      cttcccagtgagcagttcccacaacaaaattccaaaactaaaaacat 658
                |||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct: 21192614 cttccctgtgagcagctcccacatcaaaattccaaaactaaaaacat 21192568



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 342      ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 401
                |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 21193533 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 21193474

                                       
Query: 402      tccgtcgtgctcatctccaacct 424
                ||| || |||||||| |||||||
Sbjct: 21193473 tccatcatgctcatcaccaacct 21193451

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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score =  159 bits (80), Expect = 1e-35
 Identities = 119/132 (90%)
 Strand = Plus / Minus

                                                                         
Query: 420   aacctcctctgctattttcttaagagcttctaatatttcggagaaatctggcctttcagc 479
             |||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 64140 aacctcctctgctattctctgaagagtttctaatatttcagagaaatctggtctttcagc 64081

                                                                         
Query: 480   agggtcctgctgccaacacttctgaagaagctccgtgagctttgcatgcgcattttttgg 539
             ||| ||||| |||||||| |||||||||||||| |  || |||||||| |||||||||||
Sbjct: 64080 aggctcctgttgccaacatttctgaagaagctcagaaagttttgcatgagcattttttgg 64021

                         
Query: 540   tattgtaggccg 551
             ||||||||||||
Sbjct: 64020 tattgtaggccg 64009



 Score =  113 bits (57), Expect = 7e-22
 Identities = 57/57 (100%)
 Strand = Plus / Minus

                                                                      
Query: 557   ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatct 613
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63524 ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatct 63468



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                            
Query: 612   cttcccagtgagcagttcccacaacaaaattccaaaactaaaaacat 658
             |||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct: 63371 cttccctgtgagcagctcccacatcaaaattccaaaactaaaaacat 63325



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 342   ttagtgtcctcgccccctcagagacgaaaagaatccacccaggcttttgtccttgtgctt 401
             |||||| || |||||||||| ||  ||||| | ||| |||||  |||| |||||||||||
Sbjct: 64290 ttagtgcccacgccccctcaaagctgaaaatagtccgcccagtattttctccttgtgctt 64231

                                    
Query: 402   tccgtcgtgctcatctccaacct 424
             ||| || |||||||| |||||||
Sbjct: 64230 tccatcatgctcatcaccaacct 64208

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>ref|XM_463904.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2251

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Minus

                                                                        
Query: 556  cccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatcttc 615
            ||||||||||| |||||||  |||||||||| |||||| ||||||||||| || ||||| 
Sbjct: 1711 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcatagggtatcttg 1652

                                                       
Query: 616  ccagtgagcagttcccacaacaaaattccaaaactaaaaacat 658
            ||||| ||||| ||||| |  | ||| ||||| ||||||||||
Sbjct: 1651 ccagttagcagctcccatagaacaataccaaagctaaaaacat 1609

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>dbj|AK103704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136N12, full
            insert sequence
          Length = 2251

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Minus

                                                                        
Query: 556  cccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatcttc 615
            ||||||||||| |||||||  |||||||||| |||||| ||||||||||| || ||||| 
Sbjct: 1711 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcatagggtatcttg 1652

                                                       
Query: 616  ccagtgagcagttcccacaacaaaattccaaaactaaaaacat 658
            ||||| ||||| ||||| |  | ||| ||||| ||||||||||
Sbjct: 1651 ccagttagcagctcccatagaacaataccaaagctaaaaacat 1609

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>dbj|AK060220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F01, full
           insert sequence
          Length = 1006

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 87/103 (84%)
 Strand = Plus / Minus

                                                                       
Query: 556 cccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataaggaatcttc 615
           ||||||||||| |||||||  |||||||||| |||||| ||||||||||| || ||||| 
Sbjct: 550 cccttctgaacaacacctatggctgcttgtagtggtgttaggtactcatagggtatcttg 491

                                                      
Query: 616 ccagtgagcagttcccacaacaaaattccaaaactaaaaacat 658
           ||||| ||||| ||||| |  | ||| ||||| ||||||||||
Sbjct: 490 ccagttagcagctcccatagaacaataccaaagctaaaaacat 448

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                
Query: 557     ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 605
               |||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 1052342 ccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 1052390

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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1020_C02
          Length = 124578

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 557  ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 605
            |||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 4866 ccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 4914

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>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0088N06
          Length = 123454

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 557   ccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcata 605
             |||||||||| |||||||  |||||||||| |||||| |||||||||||
Sbjct: 41050 ccttctgaacaacacctatggctgcttgtagtggtgttaggtactcata 41098

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>gb|AY347832.1| Malus x domestica clone 17-4 protein kinase mRNA, partial cds
          Length = 477

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 90/112 (80%)
 Strand = Plus / Minus

                                                                       
Query: 547 ggccgcaaccccttctgaaccacacctacagctgcttgtaatggtgtcaggtactcataa 606
           ||||| || ||||| ||||| || || || ||||||||||| || |||| ||| ||||| 
Sbjct: 233 ggccgtaagcccttttgaacaactccaacggctgcttgtaacggggtcaagtattcatat 174

                                                               
Query: 607 ggaatcttcccagtgagcagttcccacaacaaaattccaaaactaaaaacat 658
           |||| ||| || || ||||  ||||| |||| || |||||| ||||||||||
Sbjct: 173 ggaagctttccggtcagcaactcccataacacaactccaaagctaaaaacat 122

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>emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h20, COMPLETE SEQUENCE
          Length = 115239

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 557   ccttctgaaccacacctacagctgcttgtaatggtgtca 595
             ||||||| |||||||| || |||||||||||||| ||||
Sbjct: 64705 ccttctgcaccacaccaactgctgcttgtaatggggtca 64667

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>gb|AC102152.12| Mus musculus chromosome 7, clone RP23-314H9, complete sequence
          Length = 206923

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 636   caaaattccaaaactaaaaaca 657
             ||||||||||||||||||||||
Sbjct: 86354 caaaattccaaaactaaaaaca 86333

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>emb|CR406198.1| Gallus gallus finished cDNA, clone ChEST856c6
          Length = 1202

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 634 aacaaaattccaaaactaaaaa 655
           ||||||||||||||||||||||
Sbjct: 425 aacaaaattccaaaactaaaaa 404

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>gb|AC122785.17| Mus musculus chromosome 3, clone RP24-247G11, complete sequence
          Length = 134667

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 627   ttcccacaacaaaattccaaa 647
             |||||||||||||||||||||
Sbjct: 78939 ttcccacaacaaaattccaaa 78919

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>dbj|AP001838.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-718B20, complete
             sequences
          Length = 211652

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 595   aggtactcataaggaatcttcccag 619
             |||||||||||||||||| ||||||
Sbjct: 13802 aggtactcataaggaatcctcccag 13826

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>gb|AF081803.1|AF081803 Xenopus laevis non-receptor protein tyrosine kinase laloo mRNA,
            complete cds
          Length = 1491

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 479  cagggtcctgctgccaacact 499
            |||||||||||||||||||||
Sbjct: 1405 cagggtcctgctgccaacact 1385

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>gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome 9, complete sequence
          Length = 181162

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 232    cagcaggcatccatctcaatg 252
              |||||||||||||||||||||
Sbjct: 105662 cagcaggcatccatctcaatg 105642

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>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence
          Length = 214202

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 634   aacaaaattccaaaactaaaaaca 657
             |||||||||||||| |||||||||
Sbjct: 61093 aacaaaattccaaatctaaaaaca 61116

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>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence
          Length = 186115

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 634   aacaaaattccaaaactaaaaaca 657
             |||||||||||||| |||||||||
Sbjct: 11454 aacaaaattccaaatctaaaaaca 11431

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>ref|XM_677376.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9199.2), mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 404 cgtcgtgctcatctccaacctcct 427
           |||||||||||||| |||||||||
Sbjct: 291 cgtcgtgctcatctacaacctcct 314

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>ref|XM_675477.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7300.2), mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 385  cttttgtccttgtgctttcc 404
            ||||||||||||||||||||
Sbjct: 1785 cttttgtccttgtgctttcc 1804

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>gb|AC125379.4| Mus musculus BAC clone RP23-53B19 from chromosome 12, complete sequence
          Length = 225930

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 429    tgctattttcttaagagcttctaa 452
              |||| |||||||||||||||||||
Sbjct: 122565 tgcttttttcttaagagcttctaa 122542

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>gb|AC123954.4| Mus musculus BAC clone RP23-249L6 from 13, complete sequence
          Length = 200727

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   ttacagccagttagaggaat 79
            ||||||||||||||||||||
Sbjct: 1628 ttacagccagttagaggaat 1609

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>gb|AC160978.4| Mus musculus BAC clone RP23-426B17 from chromosome 13, complete sequence
          Length = 197652

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ttacagccagttagaggaat 79
              ||||||||||||||||||||
Sbjct: 122933 ttacagccagttagaggaat 122914

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>emb|AL391002.9| Human DNA sequence from clone RP11-490H23 on chromosome Xq25-26.1,
             complete sequence
          Length = 85637

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 607   ggaatcttcccagtgagcag 626
             ||||||||||||||||||||
Sbjct: 23151 ggaatcttcccagtgagcag 23170

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>emb|AL357312.8| Human DNA sequence from clone RP11-390F10 on chromosome Xq21.2-22.1
             Contains a eukaryotic translation elongation factor 1
             alpha 1 (EEF1A1) pseudogene and a high-mobility group box
             1 (HMGB1) pseudogene, complete sequence
          Length = 187469

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 633   caacaaaattccaaaactaaaaac 656
             ||||||||||||||||||| ||||
Sbjct: 38451 caacaaaattccaaaactataaac 38474

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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 637    aaaattccaaaactaaaaac 656
              ||||||||||||||||||||
Sbjct: 704409 aaaattccaaaactaaaaac 704428

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>emb|AL669912.7| Mouse DNA sequence from clone RP23-147K24 on chromosome 11 Contains a
             serine/threonine kinase 16 (Stk16) pseudogene pseudogene,
             complete sequence
          Length = 174954

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 611   tcttcccagtgagcagttcc 630
             ||||||||||||||||||||
Sbjct: 87646 tcttcccagtgagcagttcc 87665

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>gb|AC114267.2| Homo sapiens chromosome 19 clone LLNLR_222F11, complete sequence
          Length = 38629

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 417   tccaacctcctctgctattttctt 440
             |||||||||||||||| |||||||
Sbjct: 17550 tccaacctcctctgctgttttctt 17573

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>dbj|AB108686.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgpE, rgpF, ORF1, ORF2,
            ORF3, ORF4, ORF12 genes for rhamnosyltransferase,
            rhamnosyltransferase, ABC transporter, ABC transporter,
            glucosyltransferase, rhamnosyltransferase, hypothetical
            proteins, complete cds, strain:LM7
          Length = 16442

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 532  ttttttggtattgtaggccg 551
            ||||||||||||||||||||
Sbjct: 2997 ttttttggtattgtaggccg 3016

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>dbj|AB108685.1| Streptococcus mutans rgpA, rgpB, rgpC, rgpD, rgpE, rgpF, ORF1, ORF2,
            ORF3, ORF12 genes for rhamnosyltransferase,
            rhamnosyltransferase, ABC transporter, ABC transporter,
            glucosyltransferase, rhamnosyltransferase, hypothetical
            proteins, complete cds, strain:MT6219
          Length = 14730

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 532  ttttttggtattgtaggccg 551
            ||||||||||||||||||||
Sbjct: 3418 ttttttggtattgtaggccg 3437

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>gb|AC113410.2| Homo sapiens chromosome 5 clone RP11-485M7, complete sequence
          Length = 123851

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tctctccctatgttacatgt 131
             ||||||||||||||||||||
Sbjct: 73748 tctctccctatgttacatgt 73729

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>gb|AC107058.4| Homo sapiens BAC clone RP11-633G11 from 4, complete sequence
          Length = 126135

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     atttcatgtgcaagttacag 65
              ||||||||||||||||||||
Sbjct: 101465 atttcatgtgcaagttacag 101446

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>gb|AC011537.8| Homo sapiens chromosome 19 clone LLNLR-249E10, complete sequence
          Length = 42056

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 417   tccaacctcctctgctattttctt 440
             |||||||||||||||| |||||||
Sbjct: 40411 tccaacctcctctgctgttttctt 40388

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>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
              Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete
              sequence
          Length = 189349

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 637    aaaattccaaaactaaaaac 656
              ||||||||||||||||||||
Sbjct: 172017 aaaattccaaaactaaaaac 172036

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>gb|AC159023.4| Pan troglodytes BAC clone CH251-506L16 from chromosome unknown,
             complete sequence
          Length = 180977

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tctctccctatgttacatgt 131
             ||||||||||||||||||||
Sbjct: 53949 tctctccctatgttacatgt 53930

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 637    aaaattccaaaactaaaaac 656
              ||||||||||||||||||||
Sbjct: 704409 aaaattccaaaactaaaaac 704428

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 304      gttcaaatggattgcaaatc 323
                ||||||||||||||||||||
Sbjct: 16983702 gttcaaatggattgcaaatc 16983683

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>gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, complete sequence
          Length = 162715

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 430    gctattttcttaagagcttctaat 453
              ||||||||||| ||||||||||||
Sbjct: 152540 gctattttctttagagcttctaat 152563

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>gb|AC010883.8| Homo sapiens BAC clone RP11-339H12 from 2, complete sequence
          Length = 215532

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 605    aaggaatcttcccagtgagcagtt 628
              |||||||||||||||| |||||||
Sbjct: 194843 aaggaatcttcccagttagcagtt 194820

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>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 532    ttttttggtattgtaggccg 551
              ||||||||||||||||||||
Sbjct: 773361 ttttttggtattgtaggccg 773380

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>dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1423D04
          Length = 154474

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    gttcaaatggattgcaaatc 323
              ||||||||||||||||||||
Sbjct: 116724 gttcaaatggattgcaaatc 116705

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>dbj|BS000035.1| Pan troglodytes chromosome 22 clone:PTB-089G12, map 22, complete
              sequences
          Length = 225055

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     taggcttcttatttcatgtg 55
              ||||||||||||||||||||
Sbjct: 146989 taggcttcttatttcatgtg 146970

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 637    aaaattccaaaactaaaaac 656
              ||||||||||||||||||||
Sbjct: 704406 aaaattccaaaactaaaaac 704425

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>gb|AC138328.3| Mus musculus BAC clone RP23-378F20 from 1, complete sequence
          Length = 153109

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 631   cacaacaaaattccaaaactaaaaacat 658
             |||||||||  |||||||||||||||||
Sbjct: 43620 cacaacaaacctccaaaactaaaaacat 43647

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>dbj|AB010970.1| Streptococcus mutans rmlD, rgpAc, rgpBc, rgpCc, rgpDc, rgpEc, rgpFc
            and ORF7 genes, partial and complete cds
          Length = 11085

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 532  ttttttggtattgtaggccg 551
            ||||||||||||||||||||
Sbjct: 3831 ttttttggtattgtaggccg 3850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,088,181
Number of Sequences: 3902068
Number of extensions: 6088181
Number of successful extensions: 109179
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108937
Number of HSP's gapped (non-prelim): 242
length of query: 658
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 635
effective length of database: 17,143,297,704
effective search space: 10885994042040
effective search space used: 10885994042040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result