ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal28k10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 pre... 29 2.8
2NU5H_NYCOV (Q5DUY0) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 28 4.8
3YM8M_YEAST (Q03263) Hypothetical transport protein YMR279C 28 6.2

>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor|
          Length = 1200

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 159 GWIVILESAFYSLCKNILPVLAGL 88
           GW+V L +AFY L  N++P   G+
Sbjct: 280 GWLVTLSAAFYGLQPNLVPEFRGV 303



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>NU5H_NYCOV (Q5DUY0) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
            dehydrogenase subunit 5)
          Length = 1849

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 189  RHHVLHRFGIGWIVILESAFYSLCKN-ILPVLAGLQADWPRLELHVTVYGDL 37
            R   L+RFG  W+       YSLC N  LP L  L    P  + ++++ G+L
Sbjct: 1387 RTFALNRFGDLWMFTASIEIYSLCHNDALPTLFAL---LPYAQFNLSILGNL 1435



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>YM8M_YEAST (Q03263) Hypothetical transport protein YMR279C|
          Length = 540

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 180 VLHRFGIGWIVILESAFYSLCKNILPVLAGLQADW 76
           V + FGI   + L  A+YS+  N+   + GL  DW
Sbjct: 234 VFYAFGIATFLSLLMAWYSIPNNVPTNIHGLSMDW 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,341,832
Number of Sequences: 219361
Number of extensions: 698686
Number of successful extensions: 1328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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