ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal28i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC097014.2| Homo sapiens chromosome 3 clone RP11-29M1, comple... 42 0.37
2gb|AC025572.13|AC025572 Homo sapiens 3 BAC RP11-58O15 (Roswell P... 42 0.37
3gb|AF102268.1|AF102268 Pacifastacus leniusculus clotting protein... 42 0.37
4gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete seq... 38 5.8
5emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H... 38 5.8
6dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:... 38 5.8

>gb|AC097014.2| Homo sapiens chromosome 3 clone RP11-29M1, complete sequence
          Length = 143671

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     tatctgggctgaatccaacag 36
              |||||||||||||||||||||
Sbjct: 118918 tatctgggctgaatccaacag 118898



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>gb|AC025572.13|AC025572 Homo sapiens 3 BAC RP11-58O15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191510

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     tatctgggctgaatccaacag 36
              |||||||||||||||||||||
Sbjct: 164391 tatctgggctgaatccaacag 164371



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>gb|AF102268.1|AF102268 Pacifastacus leniusculus clotting protein precursor, mRNA, complete
            cds
          Length = 6396

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 87   ttcttcactgagaatcaccagaatg 111
            |||||||||||||||| ||||||||
Sbjct: 2804 ttcttcactgagaatcgccagaatg 2780



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>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     tattaccaagtatctgggc 24
             |||||||||||||||||||
Sbjct: 28586 tattaccaagtatctgggc 28568



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>emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H3 on chromosome 20 Contains the
             3' end of the ATRN gene for attractin (with
             dipeptidylpeptidase IV activity) (KIAA0548), ESTs, STSs
             and GSSs, complete sequence
          Length = 104907

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    cactgagaatcaccagaat 110
             |||||||||||||||||||
Sbjct: 59164 cactgagaatcaccagaat 59146



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>dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:13N6, complete sequence
          Length = 206647

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    cactgagaatcaccagaat 110
             |||||||||||||||||||
Sbjct: 83795 cactgagaatcaccagaat 83777


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 766,894
Number of Sequences: 3902068
Number of extensions: 766894
Number of successful extensions: 59698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59688
Number of HSP's gapped (non-prelim): 10
length of query: 125
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 104
effective length of database: 17,151,101,840
effective search space: 1783714591360
effective search space used: 1783714591360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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