ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ELF2_MOUSE (Q9JHC9) ETS-related transcription factor Elf-2 (E74-... 29 3.5
2ELF2_HUMAN (Q15723) ETS-related transcription factor Elf-2 (E74-... 28 4.5
3DNAJ_XANAC (Q8PMA9) Chaperone protein dnaJ 28 7.7
4LOXL4_MOUSE (Q924C6) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 28 7.7
5LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 28 7.7

>ELF2_MOUSE (Q9JHC9) ETS-related transcription factor Elf-2 (E74-like factor 2)|
           (New ETS-related factor)
          Length = 593

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 32  HXPVPSCLQHPRSLIKWHXIPCICTTGRILSRGRRHYL*STSVPYTKEPSQTTRVTLLES 211
           H   P+CL+  RS ++    PCI T   I +  R   +  T V  + E S+    + + +
Sbjct: 104 HMESPTCLRDSRSPVEVFVPPCISTPEFIHAAMRPDVITETVVEVSTEESEPMDASPIPT 163

Query: 212 SP 217
           SP
Sbjct: 164 SP 165



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>ELF2_HUMAN (Q15723) ETS-related transcription factor Elf-2 (E74-like factor 2)|
           (New ETS-related factor)
          Length = 593

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 32  HXPVPSCLQHPRSLIKWHXIPCICTTGRILSRGRRHYL*STSVPYTKEPSQTTRVTLLES 211
           H   P+CL+  RS ++    PC+ T   I +  R   +  T V  + E S+    + + +
Sbjct: 104 HMESPTCLRDSRSPVEVFVPPCVSTPEFIHAAMRPDVITETVVEVSTEESEPMDTSPIPT 163

Query: 212 SP 217
           SP
Sbjct: 164 SP 165



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>DNAJ_XANAC (Q8PMA9) Chaperone protein dnaJ|
          Length = 375

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = +2

Query: 197 TLLESSPCHG----DSTYQNYMTCHG 262
           TL+E +PCHG    D   +   TCHG
Sbjct: 140 TLIECAPCHGSGSEDGKVETCGTCHG 165



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>LOXL4_MOUSE (Q924C6) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4) (Lysyl oxidase-related protein
           C)
          Length = 757

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 57  CRHDGTGIWAVNCHT 13
           C++DG  +W  NCHT
Sbjct: 720 CKYDGQRVWLHNCHT 734



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>LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4)
          Length = 757

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 57  CRHDGTGIWAVNCHT 13
           C++DG  +W  NCHT
Sbjct: 720 CKYDGQRVWLHNCHT 734


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,803,793
Number of Sequences: 219361
Number of extensions: 856674
Number of successful extensions: 1588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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