ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ245479.1|BNA245479 Brassica napus subsp. napus Sll3, slk, ... 42 1.00
2dbj|AB190353.1| Brassica rapa BrSLGf2b, BrSLGf2a genes, complete... 42 1.00
3gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, comp... 40 3.9
4gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, comp... 40 3.9

>emb|AJ245479.1|BNA245479 Brassica napus subsp. napus Sll3, slk, srk, CePP, Fmt, SIAH1, AtPP,
             SIAH2, & ClpP genes
          Length = 64348

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   tttctcgggggaggaggcatt 140
             |||||||||||||||||||||
Sbjct: 18618 tttctcgggggaggaggcatt 18638



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>dbj|AB190353.1| Brassica rapa BrSLGf2b, BrSLGf2a genes, complete cds
          Length = 39220

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 120  tttctcgggggaggaggcatt 140
            |||||||||||||||||||||
Sbjct: 4163 tttctcgggggaggaggcatt 4183



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>gb|AC117522.2| Homo sapiens chromosome 5 clone RP11-1072N2, complete sequence
          Length = 170219

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   agcacatatcaaaattatat 249
             ||||||||||||||||||||
Sbjct: 43894 agcacatatcaaaattatat 43875



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>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence
          Length = 198167

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    tctttgataaaatggcatat 87
             ||||||||||||||||||||
Sbjct: 17352 tctttgataaaatggcatat 17371


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,530,219
Number of Sequences: 3902068
Number of extensions: 2530219
Number of successful extensions: 41477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41471
Number of HSP's gapped (non-prelim): 6
length of query: 301
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 279
effective length of database: 17,147,199,772
effective search space: 4784068736388
effective search space used: 4784068736388
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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