>gb|AY108840.1| Zea mays PCO078891 mRNA sequence
          Length = 457

 Score =  153 bits (77), Expect = 6e-34
 Identities = 148/172 (86%)
 Strand = Plus / Minus

                                                                       
Query: 294 tcagaagatgtggacgatatcgtacgcgaatgtccagaacagcacgaaggacataaggcc 353
           |||||||||||| || || || || || |||||||| ||||||||||| ||||| |||||
Sbjct: 172 tcagaagatgtgaacaatgtcataagcaaatgtccaaaacagcacgaatgacatcaggcc 113

                                                                       
Query: 354 ggccaaaactccttcaactaaaatcctgctccaactatcgaagtatgtgtggactgagaa 413
             | ||||||||||||| | |||||||| |||||||||||||||| |  | |||||| ||
Sbjct: 112 accaaaaactccttcaattgaaatcctggtccaactatcgaagtacgcctngactgaaaa 53

                                                               
Query: 414 ctttgactttgccaagagcccaagagatgctaccatcattatcagaaagtag 465
           ||||||||| || |||||||||| |||||| |||||||||||||||||||||
Sbjct: 52  ctttgacttcgctaagagcccaatagatgcaaccatcattatcagaaagtag 1

>ref|NM_192067.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 342

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 147/180 (81%)
 Strand = Plus / Minus

                                                                       
Query: 294 tcagaagatgtggacgatatcgtacgcgaatgtccagaacagcacgaaggacataaggcc 353
           |||||||||||| || ||||| ||||| |||||||| |||||||| || |||||||||||
Sbjct: 342 tcagaagatgtgcacaatatcatacgcaaatgtccaaaacagcacaaaagacataaggcc 283

                                                                       
Query: 354 ggccaaaactccttcaactaaaatcctgctccaactatcgaagtatgtgtggactgagaa 413
             | |||||||||||||  ||||||||| |||| || || |||||||| || | ||| ||
Sbjct: 282 accaaaaactccttcaatcaaaatcctgttccagctgtcaaagtatgtatgaattgaaaa 223

                                                                       
Query: 414 ctttgactttgccaagagcccaagagatgctaccatcattatcagaaagtagaagacgaa 473
            || | |||   ||| |||||||| ||||| ||||||||||  |||| |||||| |||||
Sbjct: 222 tttggccttcagcaaaagcccaagggatgccaccatcattacaagaaggtagaacacgaa 163

>ref|NM_124331.2| Arabidopsis thaliana unknown protein AT5G49540 mRNA, complete cds
          Length = 705

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 316 tacgcgaatgtccagaacagcacgaaggacataaggcc 353
           ||||| ||||||||||||||||| || |||||||||||
Sbjct: 463 tacgcaaatgtccagaacagcacaaacgacataaggcc 426

>gb|AY129476.1| Arabidopsis thaliana AT5g49540/K6M13_9 mRNA, complete cds
          Length = 345

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 316 tacgcgaatgtccagaacagcacgaaggacataaggcc 353
           ||||| ||||||||||||||||| || |||||||||||
Sbjct: 323 tacgcaaatgtccagaacagcacaaacgacataaggcc 286

>gb|AF361850.1| Arabidopsis thaliana AT5g49540/K6M13_9 mRNA, complete cds
          Length = 639

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 316 tacgcgaatgtccagaacagcacgaaggacataaggcc 353
           ||||| ||||||||||||||||| || |||||||||||
Sbjct: 397 tacgcaaatgtccagaacagcacaaacgacataaggcc 360

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 103/129 (79%)
 Strand = Plus / Minus

                                                                            
Query: 345      cataaggccggccaaaactccttcaactaaaatcctgctccaactatcgaagtatgtgtg 404
                |||||||||  | |||||||||||||  ||||||||| |||| || || |||||||| ||
Sbjct: 28168058 cataaggccaccaaaaactccttcaatcaaaatcctgttccagctgtcaaagtatgtatg 28167999

                                                                            
Query: 405      gactgagaactttgactttgccaagagcccaagagatgctaccatcattatcagaaagta 464
                 | ||| || || | |||   ||| |||||||| ||||| ||||||||||  |||| |||
Sbjct: 28167998 aattgaaaatttggccttcagcaaaagcccaagggatgccaccatcattacaagaaggta 28167939

                         
Query: 465      gaagacgaa 473
                ||| |||||
Sbjct: 28167938 gaacacgaa 28167930

>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0478H03
          Length = 167560

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 103/129 (79%)
 Strand = Plus / Minus

                                                                        
Query: 345  cataaggccggccaaaactccttcaactaaaatcctgctccaactatcgaagtatgtgtg 404
            |||||||||  | |||||||||||||  ||||||||| |||| || || |||||||| ||
Sbjct: 2565 cataaggccaccaaaaactccttcaatcaaaatcctgttccagctgtcaaagtatgtatg 2506

                                                                        
Query: 405  gactgagaactttgactttgccaagagcccaagagatgctaccatcattatcagaaagta 464
             | ||| || || | |||   ||| |||||||| ||||| ||||||||||  |||| |||
Sbjct: 2505 aattgaaaatttggccttcagcaaaagcccaagggatgccaccatcattacaagaaggta 2446

                     
Query: 465  gaagacgaa 473
            ||| |||||
Sbjct: 2445 gaacacgaa 2437

>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0445E10
          Length = 145912

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 103/129 (79%)
 Strand = Plus / Minus

                                                                         
Query: 345   cataaggccggccaaaactccttcaactaaaatcctgctccaactatcgaagtatgtgtg 404
             |||||||||  | |||||||||||||  ||||||||| |||| || || |||||||| ||
Sbjct: 52052 cataaggccaccaaaaactccttcaatcaaaatcctgttccagctgtcaaagtatgtatg 51993

                                                                         
Query: 405   gactgagaactttgactttgccaagagcccaagagatgctaccatcattatcagaaagta 464
              | ||| || || | |||   ||| |||||||| ||||| ||||||||||  |||| |||
Sbjct: 51992 aattgaaaatttggccttcagcaaaagcccaagggatgccaccatcattacaagaaggta 51933

                      
Query: 465   gaagacgaa 473
             ||| |||||
Sbjct: 51932 gaacacgaa 51924

>dbj|AK069481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020K18, full
           insert sequence
          Length = 2086

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 103/129 (79%)
 Strand = Plus / Minus

                                                                       
Query: 345 cataaggccggccaaaactccttcaactaaaatcctgctccaactatcgaagtatgtgtg 404
           |||||||||  | |||||||||||||  ||||||||| |||| || || |||||||| ||
Sbjct: 939 cataaggccaccaaaaactccttcaatcaaaatcctgttccagctgtcaaagtatgtatg 880

                                                                       
Query: 405 gactgagaactttgactttgccaagagcccaagagatgctaccatcattatcagaaagta 464
            | ||| || || | |||   ||| |||||||| ||||| ||||||||||  |||| |||
Sbjct: 879 aattgaaaatttggccttcagcaaaagcccaagggatgccaccatcattacaagaaggta 820

                    
Query: 465 gaagacgaa 473
           ||| |||||
Sbjct: 819 gaacacgaa 811

>gb|AC007511.8|AC007511 Homo sapiens, clone RP11-84A1, complete sequence
          Length = 168822

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   acaacaaaaatggataataaag 167
             ||||||||||||||||||||||
Sbjct: 80389 acaacaaaaatggataataaag 80410

>gb|AY142940.1| Heliobacillus mobilis DNA polymerase I gene, partial cds
          Length = 2796

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 453  tatcagaaagtagaagacgaag 474
            ||||||||||||||||||||||
Sbjct: 1033 tatcagaaagtagaagacgaag 1054

>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence
          Length = 159182

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 115   agttcaccaaactagacagtaaaag 139
             |||||||||||||||||||| ||||
Sbjct: 95033 agttcaccaaactagacagttaaag 95009

>gb|AC139242.2| Mus musculus BAC clone RP23-435I6 from chromosome 13, complete sequence
          Length = 189431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 269   catcagactctccttccatcagaac 293
             ||||||||||||| |||||||||||
Sbjct: 53943 catcagactctccctccatcagaac 53919

>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence
          Length = 176667

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 115    agttcaccaaactagacagtaaaag 139
              |||||||||||||||||||| ||||
Sbjct: 135461 agttcaccaaactagacagttaaag 135485

>gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosome 13, complete
             sequence
          Length = 195710

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 269   catcagactctccttccatcagaac 293
             ||||||||||||| |||||||||||
Sbjct: 79203 catcagactctccctccatcagaac 79227

>gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome 13, complete sequence
          Length = 218640

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   cagttcaccaaactagacag 133
             ||||||||||||||||||||
Sbjct: 56337 cagttcaccaaactagacag 56356

>gb|AC116997.3| Mus musculus BAC clone RP23-8J15 from chromosome 1, complete sequence
          Length = 190712

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   ctaacaacaaaaatggataataaa 166
             ||||||||||||||| ||||||||
Sbjct: 48059 ctaacaacaaaaatgaataataaa 48036

>gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, complete sequence
          Length = 143546

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   cagttcaccaaactagacag 133
             ||||||||||||||||||||
Sbjct: 63161 cagttcaccaaactagacag 63142

>gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, complete sequence
          Length = 182634

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    gctcctcccatcagaagatg 251
              ||||||||||||||||||||
Sbjct: 171774 gctcctcccatcagaagatg 171793

>gb|AC145475.1| Pan troglodytes BAC clone RP43-34K7 from 7, complete sequence
          Length = 136914

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   cattatcagaaagtagaaga 469
             ||||||||||||||||||||
Sbjct: 37199 cattatcagaaagtagaaga 37218

>emb|AL512636.12| Human DNA sequence from clone RP11-213D12 on chromosome 6 Contains
            part of a novel gene, complete sequence
          Length = 160255

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 418  gactttgccaagagcccaag 437
            ||||||||||||||||||||
Sbjct: 4814 gactttgccaagagcccaag 4795

>emb|CR388090.9| Zebrafish DNA sequence from clone DKEY-267J14 in linkage group 8,
             complete sequence
          Length = 116021

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 134   taaaagtaactaacaacaaaaatg 157
             ||||||||| ||||||||||||||
Sbjct: 55263 taaaagtaaataacaacaaaaatg 55240

>emb|AL645948.10| Mouse DNA sequence from clone RP23-298M7 on chromosome 11 Contains an H+
              transporting ATP synthase mitochondrial F0 complex subunit
              g (Atp5l) pseudogene, a ferritin light chain 1 (Ftl1)
              pseudogene, three novel genes, the gene for a novel ENTH
              domain containing protein, the 5' end of the Sox30 gene for
              SRY-box containing gene 30 and three Cpg islands, complete
              sequence
          Length = 207877

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 415    tttgactttgccaagagcccaaga 438
              ||||||||| ||||||||||||||
Sbjct: 120405 tttgacttttccaagagcccaaga 120382

>emb|BX545915.7| Zebrafish DNA sequence from clone DKEY-41B16 in linkage group 3,
             complete sequence
          Length = 192468

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   taaaagtaactaacaacaaa 153
             ||||||||||||||||||||
Sbjct: 68350 taaaagtaactaacaacaaa 68331

>gb|AC073587.6| Homo sapiens chromosome 10 clone RP11-572P18, complete sequence
          Length = 216523

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    gaggagactcctttgttcca 186
              ||||||||||||||||||||
Sbjct: 143613 gaggagactcctttgttcca 143594

>ref|XM_687344.1| PREDICTED: Danio rerio similar to gamma filamin (LOC563981), mRNA
          Length = 4512

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 411  gaactttgactttgccaaga 430
            ||||||||||||||||||||
Sbjct: 2938 gaactttgactttgccaaga 2919

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 423      tgccaagagcccaagagatg 442
                ||||||||||||||||||||
Sbjct: 18878043 tgccaagagcccaagagatg 18878024

>emb|X68488.1|CPLRRNAB Claviceps purpurea mitochondrial DNA for large ribosomal RNA,
           strain W3
          Length = 1829

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 ctccttcaactaaaatcctg 381
           ||||||||||||||||||||
Sbjct: 256 ctccttcaactaaaatcctg 275

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 159     ataataaagaggagactcct 178
               ||||||||||||||||||||
Sbjct: 3384226 ataataaagaggagactcct 3384207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,375,745
Number of Sequences: 3902068
Number of extensions: 4375745
Number of successful extensions: 95173
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95029
Number of HSP's gapped (non-prelim): 144
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)