ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27m13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRD1_HORVU (Q5EFU4) Magnesium-protoporphyrin IX monomethyl ester... 104 5e-23
2CRD1_GOSHI (Q6SJV8) Magnesium-protoporphyrin IX monomethyl ester... 90 2e-18
3CRD1_EUPES (Q945B7) Magnesium-protoporphyrin IX monomethyl ester... 88 5e-18
4CRD1_ARATH (Q9M591) Magnesium-protoporphyrin IX monomethyl ester... 82 5e-16
5CTH1_CHLRE (Q9AR22) Magnesium-protoporphyrin IX monomethyl ester... 38 0.006
6ACSF_PORPU (P51277) Magnesium-protoporphyrin IX monomethyl ester... 34 0.12
7ACSF1_ANASP (Q8YX57) Magnesium-protoporphyrin IX monomethyl este... 30 2.2
8FUT8_DROME (Q9VYV5) Alpha-(1,6)-fucosyltransferase (EC 2.4.1.68)... 29 3.8
9KCNG1_HUMAN (Q9UIX4) Potassium voltage-gated channel subfamily G... 29 3.8
10DNAK_PSESM (Q87WP0) Chaperone protein dnaK (Heat shock protein 7... 28 8.5

>CRD1_HORVU (Q5EFU4) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase) (Protein Xantha-l)
          Length = 417

 Score =  104 bits (260), Expect = 5e-23
 Identities = 53/53 (100%), Positives = 53/53 (100%)
 Frame = -3

Query: 208 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVDFAEFEPKLVY 50
           ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVDFAEFEPKLVY
Sbjct: 365 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVDFAEFEPKLVY 417



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>CRD1_GOSHI (Q6SJV8) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase)
          Length = 405

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 40/53 (75%), Positives = 50/53 (94%)
 Frame = -3

Query: 208 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVDFAEFEPKLVY 50
           +++GE++D+PLVKNLKR+PLIA L SE++A YLMPPIESGSVDFAEFEP+LVY
Sbjct: 353 LAVGETSDIPLVKNLKRIPLIAALASELLATYLMPPIESGSVDFAEFEPQLVY 405



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>CRD1_EUPES (Q945B7) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase)
          Length = 405

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 43/52 (82%), Positives = 48/52 (92%)
 Frame = -3

Query: 205 SIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVDFAEFEPKLVY 50
           ++GE+ D  +VKNLKRVPLIA LVSEI+AAYLMPPIESGSVDFAEFEPKLVY
Sbjct: 354 AVGETEDNSVVKNLKRVPLIAALVSEILAAYLMPPIESGSVDFAEFEPKLVY 405



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>CRD1_ARATH (Q9M591) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative
           cyclase) (Copper response defect 1 protein)
           (Dicarboxylate diiron protein) (AtZIP
          Length = 409

 Score = 81.6 bits (200), Expect = 5e-16
 Identities = 36/53 (67%), Positives = 45/53 (84%)
 Frame = -3

Query: 208 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVDFAEFEPKLVY 50
           ++IGE++D   +K LKR+PL+  L SEI+AAYLMPP+ESGSVDFAEFEP LVY
Sbjct: 357 LAIGETDDASFIKTLKRIPLVTSLASEILAAYLMPPVESGSVDFAEFEPNLVY 409



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>CTH1_CHLRE (Q9AR22) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase 2, chloroplast precursor (EC 1.14.13.81)
           (Mg-protoporphyrin IX monomethyl ester oxidative cyclase
           2) (Copper target homolog 1 protein)
          Length = 407

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = -3

Query: 208 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSVDFAEFEPKLVY 50
           ++IG  N    +K + + P++ ++V+E+   ++M P ESGS D    +  LVY
Sbjct: 355 VNIGSMNLPSPIKAIMKAPILERMVAEVFQVFIMTPKESGSYDLDANKTALVY 407



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>ACSF_PORPU (P51277) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl
           ester oxidative cyclase)
          Length = 349

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 208 ISIGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIESGSV 83
           I I +    PLVK   + PL   L+  +I  YL+ PI+S +V
Sbjct: 303 IDIDKKGSQPLVKTFMKAPLYMSLILNLIKIYLIKPIDSQAV 344



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>ACSF1_ANASP (Q8YX57) Magnesium-protoporphyrin IX monomethyl ester [oxidative]|
           cyclase 1 (EC 1.14.13.81) (Mg-protoporphyrin IX
           monomethyl ester oxidative cyclase 1)
          Length = 351

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 202 IGESNDLPLVKNLKRVPLIAQLVSEIIAAYLMPPIES 92
           I  S+    VK ++++PLIA +V  ++  YL+ PI++
Sbjct: 307 IERSSQPKFVKLIRKLPLIAAIVWNLLMVYLIKPIDT 343



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>FUT8_DROME (Q9VYV5) Alpha-(1,6)-fucosyltransferase (EC 2.4.1.68) (Glycoprotein|
           6-alpha-L-fucosyltransferase) (GDP-fucose--glycoprotein
           fucosyltransferase)
           (GDP-L-Fuc:N-acetyl-beta-D-glucosaminide
           alpha1,6-fucosyltransferase) (alpha1-6FucT)
          Length = 619

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 100 IESGSVDFAEFEPKLVY*ICRKRIHT 23
           +E+G  D  EFEP L Y   R+RI T
Sbjct: 140 LEAGVPDHGEFEPSLEYEFTRRRIQT 165



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>KCNG1_HUMAN (Q9UIX4) Potassium voltage-gated channel subfamily G member 1|
           (Voltage-gated potassium channel subunit Kv6.1) (kH2)
          Length = 513

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 206 FYRRVQRLAPGEEPEEG 156
           FYRR QRL P +EP +G
Sbjct: 39  FYRRAQRLRPQDEPRQG 55



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>DNAK_PSESM (Q87WP0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 638

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 208 ISIGESNDLPLVKNLKRVPLIAQLVSE 128
           I IG+ ND+ LV    R+PL+ +LV+E
Sbjct: 329 IDIGKINDVILVGGQTRMPLVQKLVTE 355


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,821,274
Number of Sequences: 219361
Number of extensions: 423247
Number of successful extensions: 1203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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