ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27m13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX mono... 398 e-108
2ref|NM_188121.1| Oryza sativa (japonica cultivar-group), Ozsa855... 157 2e-35
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 2e-35
4dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 157 2e-35
5dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 157 2e-35
6dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 2e-35
7dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 2e-35
8dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 2e-35
9dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 2e-35
10gb|AY108897.1| Zea mays PCO080076 mRNA sequence 131 9e-28
11ref|NM_115554.2| Arabidopsis thaliana transporter AT3G56950 mRNA... 62 7e-07
12ref|NM_115553.2| Arabidopsis thaliana AT103 (DICARBOXYLATE DIIRO... 62 7e-07
13emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BA... 62 7e-07
14emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BA... 62 7e-07
15gb|AF236101.1| Arabidopsis thaliana putative dicarboxylate diiro... 62 7e-07
16gb|U38232.1|ATU38232 Arabidopsis thaliana AT103 mRNA, complete cds 62 7e-07
17gb|AY322552.1| Triticum aestivum putative fatty acid desaturase ... 52 7e-04
18gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete se... 50 0.003
19gb|AC119987.13| Mus musculus chromosome 9, clone RP24-502H5, com... 46 0.043
20gb|AC100506.17| Mus musculus chromosome 9, clone RP23-144D3, com... 46 0.043
21gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, com... 42 0.67
22gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, com... 42 0.67
23gb|AF417577.1|AF417577 Euphorbia esula leucine zipper-containing... 42 0.67
24dbj|AP000752.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 0.67
25ref|XM_381007.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 2.7
26gb|AC068722.6|AC068722 Homo sapiens chromosome 15 clone CTD-2306... 40 2.7
27dbj|AK111043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
28dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 2.7 
>gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX monomethyl ester cyclase
            (Xantha-l) gene, complete cds
          Length = 2097

 Score =  398 bits (201), Expect = e-108
 Identities = 208/209 (99%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttatgtttgtaaagataggcagagtatgaatcctttttcgacaaattcagtagacaagct 60
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2011 ttatgtttgtaaagataggcagag-atgaatcctttttcgacaaattcagtagacaagct 1953

                                                                        
Query: 61   tgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 tgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcag 1893

                                                                        
Query: 121  cgatgatctcagacactagttgggcaataagaggaaccctcttcaggttcttcaccaggg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 cgatgatctcagacactagttgggcaataagaggaaccctcttcaggttcttcaccaggg 1833

                                         
Query: 181  gcaagtcgttggactctcctatagaaatg 209
            |||||||||||||||||||||||||||||
Sbjct: 1832 gcaagtcgttggactctcctatagaaatg 1804
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>ref|NM_188121.1| Oryza sativa (japonica cultivar-group), Ozsa8553 predicted mRNA
          Length = 1227

 Score =  157 bits (79), Expect = 2e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                        
Query: 47   tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 106
            |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1227 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 1168

                                                                        
Query: 107  catgaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcag 166
            ||||||||||||||| |||||||||||||| ||   |||||   |||||| |||||||||
Sbjct: 1167 catgaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcag 1108

                           
Query: 167  gttcttcaccagggg 181
            |||||||||||||||
Sbjct: 1107 gttcttcaccagggg 1093
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 2e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                           
Query: 47      tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 106
               |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 9875240 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 9875181

                                                                           
Query: 107     catgaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcag 166
               ||||||||||||||| |||||||||||||| ||   |||||   |||||| |||||||||
Sbjct: 9875180 catgaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcag 9875121

                              
Query: 167     gttcttcaccagggg 181
               |||||||||||||||
Sbjct: 9875120 gttcttcaccagggg 9875106
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>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025D05
          Length = 145684

 Score =  157 bits (79), Expect = 2e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                          
Query: 47     tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 106
              |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 139490 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 139431

                                                                          
Query: 107    catgaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcag 166
              ||||||||||||||| |||||||||||||| ||   |||||   |||||| |||||||||
Sbjct: 139430 catgaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcag 139371

                             
Query: 167    gttcttcaccagggg 181
              |||||||||||||||
Sbjct: 139370 gttcttcaccagggg 139356
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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0003H10
          Length = 142418

 Score =  157 bits (79), Expect = 2e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                         
Query: 47    tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 106
             |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 11006 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 10947

                                                                         
Query: 107   catgaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcag 166
             ||||||||||||||| |||||||||||||| ||   |||||   |||||| |||||||||
Sbjct: 10946 catgaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcag 10887

                            
Query: 167   gttcttcaccagggg 181
             |||||||||||||||
Sbjct: 10886 gttcttcaccagggg 10872
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>dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014B03, full
            insert sequence
          Length = 1691

 Score =  157 bits (79), Expect = 2e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                        
Query: 47   tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 106
            |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1275 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 1216

                                                                        
Query: 107  catgaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcag 166
            ||||||||||||||| |||||||||||||| ||   |||||   |||||| |||||||||
Sbjct: 1215 catgaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcag 1156

                           
Query: 167  gttcttcaccagggg 181
            |||||||||||||||
Sbjct: 1155 gttcttcaccagggg 1141
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>dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B09, full
           insert sequence
          Length = 618

 Score =  157 bits (79), Expect = 2e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                       
Query: 47  tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 106
           |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 350 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 291

                                                                       
Query: 107 catgaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcag 166
           ||||||||||||||| |||||||||||||| ||   |||||   |||||| |||||||||
Sbjct: 290 catgaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcag 231

                          
Query: 167 gttcttcaccagggg 181
           |||||||||||||||
Sbjct: 230 gttcttcaccagggg 216
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>dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F10, full
            insert sequence
          Length = 1944

 Score =  157 bits (79), Expect = 2e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                        
Query: 47   tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 106
            |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1265 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 1206

                                                                        
Query: 107  catgaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcag 166
            ||||||||||||||| |||||||||||||| ||   |||||   |||||| |||||||||
Sbjct: 1205 catgaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcag 1146

                           
Query: 167  gttcttcaccagggg 181
            |||||||||||||||
Sbjct: 1145 gttcttcaccagggg 1131
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>dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E02, full
            insert sequence
          Length = 1533

 Score =  157 bits (79), Expect = 2e-35
 Identities = 121/135 (89%)
 Strand = Plus / Minus

                                                                        
Query: 47   tcagtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattggggg 106
            |||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 1261 tcagtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattggggg 1202

                                                                        
Query: 107  catgaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcag 166
            ||||||||||||||| |||||||||||||| ||   |||||   |||||| |||||||||
Sbjct: 1201 catgaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcag 1142

                           
Query: 167  gttcttcaccagggg 181
            |||||||||||||||
Sbjct: 1141 gttcttcaccagggg 1127
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>gb|AY108897.1| Zea mays PCO080076 mRNA sequence
          Length = 1774

 Score =  131 bits (66), Expect = 9e-28
 Identities = 120/138 (86%)
 Strand = Plus / Minus

                                                                        
Query: 62   gggctcaaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcagc 121
            ||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || ||
Sbjct: 1251 gggctcaaattcggcgaaatcaaccgagccagactcgatggggggcatgaggtaggcggc 1192

                                                                        
Query: 122  gatgatctcagacactagttgggcaataagaggaaccctcttcaggttcttcaccagggg 181
            ||||||||| ||||| ||   ||| | |||||||| |||||||||||||||||| |||||
Sbjct: 1191 gatgatctcggacaccagagaggcgacaagaggaatcctcttcaggttcttcactagggg 1132

                              
Query: 182  caagtcgttggactctcc 199
             |  |||| |||||||||
Sbjct: 1131 gatttcgtcggactctcc 1114
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>ref|NM_115554.2| Arabidopsis thaliana transporter AT3G56950 mRNA, complete cds
          Length = 1481

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                        
Query: 51   tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 110
            |||||||| || |||||||| ||||| |||||||| ||||||||||| |  || ||||||
Sbjct: 1222 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 1281

                                   
Query: 111  aggtacgcagcgatgatctcaga 133
            || || ||||| | |||||||||
Sbjct: 1282 agataagcagccaagatctcaga 1304
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>ref|NM_115553.2| Arabidopsis thaliana AT103 (DICARBOXYLATE DIIRON 1) AT3G56940 (AT103)
            mRNA, complete cds
          Length = 1602

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 51   tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 110
            |||||||| || |||||||| ||||| |||||||| ||||||||||| |  || ||||||
Sbjct: 1275 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 1216

                                   
Query: 111  aggtacgcagcgatgatctcaga 133
            || || ||||| | |||||||||
Sbjct: 1215 agataagcagccaagatctcaga 1193
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>emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16
          Length = 107271

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                         
Query: 51    tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 110
             |||||||| || |||||||| ||||| |||||||| ||||||||||| |  || ||||||
Sbjct: 94188 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 94129

                                    
Query: 111   aggtacgcagcgatgatctcaga 133
             || || ||||| | |||||||||
Sbjct: 94128 agataagcagccaagatctcaga 94106
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>emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24I3
          Length = 91303

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 51   tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 110
            |||||||| || |||||||| ||||| |||||||| ||||||||||| |  || ||||||
Sbjct: 6275 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 6216

                                   
Query: 111  aggtacgcagcgatgatctcaga 133
            || || ||||| | |||||||||
Sbjct: 6215 agataagcagccaagatctcaga 6193
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>gb|AF236101.1| Arabidopsis thaliana putative dicarboxylate diiron protein (Crd1)
            mRNA, complete cds
          Length = 1407

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 51   tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 110
            |||||||| || |||||||| ||||| |||||||| ||||||||||| |  || ||||||
Sbjct: 1265 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 1206

                                   
Query: 111  aggtacgcagcgatgatctcaga 133
            || || ||||| | |||||||||
Sbjct: 1205 agataagcagccaagatctcaga 1183
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>gb|U38232.1|ATU38232 Arabidopsis thaliana AT103 mRNA, complete cds
          Length = 1349

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 51   tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 110
            |||||||| || |||||||| ||||| |||||||| ||||||||||| |  || ||||||
Sbjct: 1241 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 1182

                                   
Query: 111  aggtacgcagcgatgatctcaga 133
            || || ||||| | |||||||||
Sbjct: 1181 agataagcagccaagatctcaga 1159
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>gb|AY322552.1| Triticum aestivum putative fatty acid desaturase TAZIP mRNA,
           partial cds
          Length = 903

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                       
Query: 63  ggctcaaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcagcg 122
           ||||| |||||||| |||||||| ||||||||||| |  || |||||||| || ||||| 
Sbjct: 902 ggctcgaattcggcgaaatcaacagagccagactcaacaggaggcatgagataagcagcc 843

                     
Query: 123 atgatctcag 132
           | ||||||||
Sbjct: 842 aagatctcag 833
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>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
          Length = 96930

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                         
Query: 49    agtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggca 108
             |||| ||||| || || ||||| || ||||||||||| || |||||||||||||| ||||
Sbjct: 95940 agtaaacaagttttggttcaaactctgcaaaatcaacagatccagactcgattggtggca 95881

              
Query: 109   t 109
             |
Sbjct: 95880 t 95880
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>gb|AC119987.13| Mus musculus chromosome 9, clone RP24-502H5, complete sequence
          Length = 173716

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 158   cctcttcaggttcttcaccaggg 180
             |||||||||||||||||||||||
Sbjct: 64529 cctcttcaggttcttcaccaggg 64551
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>gb|AC100506.17| Mus musculus chromosome 9, clone RP23-144D3, complete sequence
          Length = 198388

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 158   cctcttcaggttcttcaccaggg 180
             |||||||||||||||||||||||
Sbjct: 21035 cctcttcaggttcttcaccaggg 21013
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>gb|AC102136.6| Mus musculus chromosome 3, clone RP23-269G19, complete sequence
          Length = 186659

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 182    caagtcgttggactctcctatagaa 206
              ||||| |||||||||||||||||||
Sbjct: 148356 caagtagttggactctcctatagaa 148332
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>gb|AC158583.3| Mus musculus chromosome 3, clone RP24-318B11, complete sequence
          Length = 168986

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 182    caagtcgttggactctcctatagaa 206
              ||||| |||||||||||||||||||
Sbjct: 166280 caagtagttggactctcctatagaa 166256
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>gb|AF417577.1|AF417577 Euphorbia esula leucine zipper-containing protein gene, complete cds
          Length = 5083

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 147  ataagaggaaccctcttcaggttcttcac 175
            ||||| ||||||||||||| |||||||||
Sbjct: 4641 ataagtggaaccctcttcaagttcttcac 4613
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>dbj|AP000752.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-689N19, complete
              sequence
          Length = 194140

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 49     agtagacaagcttgggctcaaattc 73
              ||||||||||||||| |||||||||
Sbjct: 149100 agtagacaagcttggtctcaaattc 149076
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>ref|XM_381007.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00831.1)
            partial mRNA
          Length = 2712

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  gcaataagaggaaccctcttcagg 167
            ||||||||||||||| ||||||||
Sbjct: 2081 gcaataagaggaaccttcttcagg 2058
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>gb|AC068722.6|AC068722 Homo sapiens chromosome 15 clone CTD-2306A12 map 15q21.1, complete
             sequence
          Length = 151924

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    agacaagcttgggctcaaat 71
             ||||||||||||||||||||
Sbjct: 64006 agacaagcttgggctcaaat 64025
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>dbj|AK111043.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-B07, full
           insert sequence
          Length = 634

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  tttttcgacaaattcagtag 53
           ||||||||||||||||||||
Sbjct: 631 tttttcgacaaattcagtag 612
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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      attcggcaaaatcaacggag 89
               ||||||||||||||||||||
Sbjct: 3368423 attcggcaaaatcaacggag 3368442


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,381,799
Number of Sequences: 3902068
Number of extensions: 1381799
Number of successful extensions: 93530
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93405
Number of HSP's gapped (non-prelim): 115
length of query: 210
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 188
effective length of database: 17,147,199,772
effective search space: 3223673557136
effective search space used: 3223673557136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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