| Clone Name | rbaal27l17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 248 bits (125), Expect = 2e-62 Identities = 254/297 (85%) Strand = Plus / Plus Query: 145 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 204 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 20142960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 20143019 Query: 205 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 264 |||| ||| ||||| ||||| ||||| ||||| || | |||||||||| |||||| ||| Sbjct: 20143020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 20143079 Query: 265 caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 324 || |||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||| Sbjct: 20143080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 20143139 Query: 325 atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 384 ||| | ||||||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 20143140 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 20143199 Query: 385 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 441 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 20143200 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 20143256 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Plus Query: 510 cggcgctgacaccgaggtgtgcatgccgc 538 |||||| |||||||||||||||||||||| Sbjct: 20143343 cggcgccgacaccgaggtgtgcatgccgc 20143371
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0007G12 Length = 111819 Score = 248 bits (125), Expect = 2e-62 Identities = 254/297 (85%) Strand = Plus / Plus Query: 145 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 204 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 8960 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 9019 Query: 205 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 264 |||| ||| ||||| ||||| ||||| ||||| || | |||||||||| |||||| ||| Sbjct: 9020 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 9079 Query: 265 caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 324 || |||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||| Sbjct: 9080 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 9139 Query: 325 atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 384 ||| | ||||||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 9140 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 9199 Query: 385 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 441 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 9200 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 9256 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Plus Query: 510 cggcgctgacaccgaggtgtgcatgccgc 538 |||||| |||||||||||||||||||||| Sbjct: 9343 cggcgccgacaccgaggtgtgcatgccgc 9371
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1068H08 Length = 152794 Score = 248 bits (125), Expect = 2e-62 Identities = 254/297 (85%) Strand = Plus / Plus Query: 145 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 204 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 131234 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 131293 Query: 205 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 264 |||| ||| ||||| ||||| ||||| ||||| || | |||||||||| |||||| ||| Sbjct: 131294 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 131353 Query: 265 caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 324 || |||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||| Sbjct: 131354 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 131413 Query: 325 atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 384 ||| | ||||||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 131414 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 131473 Query: 385 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 441 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 131474 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 131530 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Plus Query: 510 cggcgctgacaccgaggtgtgcatgccgc 538 |||||| |||||||||||||||||||||| Sbjct: 131617 cggcgccgacaccgaggtgtgcatgccgc 131645
>dbj|AK065374.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003B24, full insert sequence Length = 1884 Score = 248 bits (125), Expect = 2e-62 Identities = 254/297 (85%) Strand = Plus / Minus Query: 145 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 204 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 1492 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 1433 Query: 205 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcacttgg 264 |||| ||| ||||| ||||| ||||| ||||| || | |||||||||| |||||| ||| Sbjct: 1432 ttggcggagatggcgagcgcgcccttctgcccgttccgcgtcgcctcgatgctcacctgg 1373 Query: 265 caatccttggtgcgcgccgtgaagctaacctgccccgcgatctcctccagcttggagatg 324 || |||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||| Sbjct: 1372 cagtccttggtccgcgccgtgaagctcaccatcccggcgatctcctgcagcttggcgata 1313 Query: 325 atggtgttcaccggcgcgctggacacgaaacgcaactgctcgccgcgctcctcaaacagc 384 ||| | ||||||||||| ||||||||| |||| | ||||||||||||||| |||||| Sbjct: 1312 atgtcggccaccggcgcgccggacacgaagcgcatcctctcgccgcgctcctcgaacagc 1253 Query: 385 ccggacagatcgaagcttggcgaggaggcgatgatgtcgaacgcgttcatgctcttg 441 || ||||| |||||||| ||||| || |||||||||||||||||||||| ||||||| Sbjct: 1252 cccgacaggtcgaagctcggcgacgacgcgatgatgtcgaacgcgttcaggctcttg 1196 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Minus Query: 510 cggcgctgacaccgaggtgtgcatgccgc 538 |||||| |||||||||||||||||||||| Sbjct: 1109 cggcgccgacaccgaggtgtgcatgccgc 1081
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 178 bits (90), Expect = 2e-41 Identities = 222/266 (83%) Strand = Plus / Plus Query: 166 acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 225 ||||||||||||||||||||| |||||||| ||| | ||||| ||| ||||| ||||| Sbjct: 5627866 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 5627925 Query: 226 cccttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtg 285 ||||| ||||| || |||||||||| |||||| ||||| |||||||| |||||| || Sbjct: 5627926 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 5627985 Query: 286 aagctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctg 345 ||||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| | Sbjct: 5627986 aagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccg 5628045 Query: 346 gacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggc 405 |||||||| |||| | |||||||||||||| |||||||||||||| |||||||| ||| Sbjct: 5628046 gacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggc 5628105 Query: 406 gaggaggcgatgatgtcgaacgcgtt 431 || || || ||||||||||||||||| Sbjct: 5628106 gacgatgcaatgatgtcgaacgcgtt 5628131
>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01, complete sequence Length = 162227 Score = 178 bits (90), Expect = 2e-41 Identities = 222/266 (83%) Strand = Plus / Plus Query: 166 acctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgct 225 ||||||||||||||||||||| |||||||| ||| | ||||| ||| ||||| ||||| Sbjct: 85073 acctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcg 85132 Query: 226 cccttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtg 285 ||||| ||||| || |||||||||| |||||| ||||| |||||||| |||||| || Sbjct: 85133 cccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatg 85192 Query: 286 aagctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctg 345 ||||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| | Sbjct: 85193 aagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccg 85252 Query: 346 gacacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggc 405 |||||||| |||| | |||||||||||||| |||||||||||||| |||||||| ||| Sbjct: 85253 gacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggc 85312 Query: 406 gaggaggcgatgatgtcgaacgcgtt 431 || || || ||||||||||||||||| Sbjct: 85313 gacgatgcaatgatgtcgaacgcgtt 85338
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 119 bits (60), Expect = 1e-23 Identities = 213/264 (80%) Strand = Plus / Plus Query: 168 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 227 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 12496072 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 12496131 Query: 228 cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 287 ||| || || || | |||||||||| |||||| ||||| |||||||| | |||| |||| Sbjct: 12496132 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 12496191 Query: 288 gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 347 ||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| ||| Sbjct: 12496192 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 12496251 Query: 348 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 407 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 12496252 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 12496311 Query: 408 ggaggcgatgatgtcgaacgcgtt 431 || || |||||||||||| |||| Sbjct: 12496312 cgatgcaatgatgtcgaacccgtt 12496335 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Plus Query: 299 ccgcgatctcctccagcttggaga 322 |||||||||||||||||||||||| Sbjct: 31932183 ccgcgatctcctccagcttggaga 31932206 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||| |||||||||||| Sbjct: 31932304 gatgatgtcgaaggcgttcatgctc 31932328 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 5799716 gatgatgtcgaacgcgttcaggctc 5799692 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 3429789 gatgatgtcgaacgcgttcaggctc 3429765
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 119 bits (60), Expect = 1e-23 Identities = 213/264 (80%) Strand = Plus / Plus Query: 168 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 227 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 7682 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 7741 Query: 228 cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 287 ||| || || || | |||||||||| |||||| ||||| |||||||| | |||| |||| Sbjct: 7742 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 7801 Query: 288 gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 347 ||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| ||| Sbjct: 7802 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 7861 Query: 348 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 407 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 7862 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 7921 Query: 408 ggaggcgatgatgtcgaacgcgtt 431 || || |||||||||||| |||| Sbjct: 7922 cgatgcaatgatgtcgaacccgtt 7945
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 119 bits (60), Expect = 1e-23 Identities = 213/264 (80%) Strand = Plus / Plus Query: 168 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 227 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 81687 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 81746 Query: 228 cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 287 ||| || || || | |||||||||| |||||| ||||| |||||||| | |||| |||| Sbjct: 81747 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 81806 Query: 288 gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 347 ||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| ||| Sbjct: 81807 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 81866 Query: 348 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 407 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 81867 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 81926 Query: 408 ggaggcgatgatgtcgaacgcgtt 431 || || |||||||||||| |||| Sbjct: 81927 cgatgcaatgatgtcgaacccgtt 81950
>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for class III peroxidase 13 precursor, exons 1-3 Length = 9315 Score = 119 bits (60), Expect = 1e-23 Identities = 213/264 (80%) Strand = Plus / Plus Query: 168 ctggaccatgacgagctccggcgtgagctggaatatcttggtggatatggccagcgctcc 227 |||||||||||||||||| ||||||| ||| | ||||| ||| ||||| ||||| | Sbjct: 3571 ctggaccatgacgagctcacatgtgagctcgaacaccttggcggagatggcgagcgcgct 3630 Query: 228 cttgtgcccatttcttgtcgcctcgaagctcacttggcaatccttggtgcgcgccgtgaa 287 ||| || || || | |||||||||| |||||| ||||| |||||||| | |||| |||| Sbjct: 3631 cttctgtccgttccgcgtcgcctcgatgctcacctggcagtccttggtccacgccatgaa 3690 Query: 288 gctaacctgccccgcgatctcctccagcttggagatgatggtgttcaccggcgcgctgga 347 ||| ||| || ||||||||||| ||||||| ||||||| | ||||| ||||| ||| Sbjct: 3691 gctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccgga 3750 Query: 348 cacgaaacgcaactgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcga 407 |||||| |||| | |||||| ||||||| ||||||||||||| |||||||| ||||| Sbjct: 3751 cacgaagcgcatcctctcgccacgctcctggaacagcccggacatgtcgaagctcggcga 3810 Query: 408 ggaggcgatgatgtcgaacgcgtt 431 || || |||||||||||| |||| Sbjct: 3811 cgatgcaatgatgtcgaacccgtt 3834
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 113 bits (57), Expect = 8e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 301 gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 360 ||||||||||||||||||| ||||||| | |||| |||||| ||||| ||| ||| | Sbjct: 11596142 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 11596083 Query: 361 tgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgatg 420 |||||||||||||||||||||| | ||||| |||||||| |||| || ||||||||| Sbjct: 11596082 ctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgatg 11596023 Query: 421 tcgaacgcgttcatgctcttg 441 ||||||||||||| ||||||| Sbjct: 11596022 tcgaacgcgttcaggctcttg 11596002 Score = 87.7 bits (44), Expect = 5e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 145 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 204 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 11596265 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 11596206 Query: 205 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 260 |||| ||| ||||| || || ||||| ||||| || | |||||||||| |||||| Sbjct: 11596205 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 11596150
>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1034_C08 Length = 154441 Score = 113 bits (57), Expect = 8e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 301 gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 360 ||||||||||||||||||| ||||||| | |||| |||||| ||||| ||| ||| | Sbjct: 150276 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 150217 Query: 361 tgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgatg 420 |||||||||||||||||||||| | ||||| |||||||| |||| || ||||||||| Sbjct: 150216 ctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgatg 150157 Query: 421 tcgaacgcgttcatgctcttg 441 ||||||||||||| ||||||| Sbjct: 150156 tcgaacgcgttcaggctcttg 150136 Score = 87.7 bits (44), Expect = 5e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 145 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 204 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 150399 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 150340 Query: 205 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 260 |||| ||| ||||| || || ||||| ||||| || | |||||||||| |||||| Sbjct: 150339 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 150284
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0467G09 Length = 158204 Score = 113 bits (57), Expect = 8e-22 Identities = 120/141 (85%) Strand = Plus / Minus Query: 301 gcgatctcctccagcttggagatgatggtgttcaccggcgcgctggacacgaaacgcaac 360 ||||||||||||||||||| ||||||| | |||| |||||| ||||| ||| ||| | Sbjct: 56413 gcgatctcctccagcttggcgatgatgtcggccaccagcgcgccggacatgaagtgcatc 56354 Query: 361 tgctcgccgcgctcctcaaacagcccggacagatcgaagcttggcgaggaggcgatgatg 420 |||||||||||||||||||||| | ||||| |||||||| |||| || ||||||||| Sbjct: 56353 ctctcgccgcgctcctcaaacagctcagacaggtcgaagctcagcgacgacgcgatgatg 56294 Query: 421 tcgaacgcgttcatgctcttg 441 ||||||||||||| ||||||| Sbjct: 56293 tcgaacgcgttcaggctcttg 56273 Score = 87.7 bits (44), Expect = 5e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 145 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 204 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 56536 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 56477 Query: 205 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 260 |||| ||| ||||| || || ||||| ||||| || | |||||||||| |||||| Sbjct: 56476 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 56421
>ref|XM_481332.1| Oryza sativa (japonica cultivar-group), mRNA Length = 768 Score = 87.7 bits (44), Expect = 5e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 145 gtgtctccggctttcttgcatacctggaccatgacgagctccggcgtgagctggaatatc 204 ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||| | | Sbjct: 629 gtgtcgccggccttcttgcacacctggaccatgacgagctcccgcgtgagctcgaacacc 570 Query: 205 ttggtggatatggccagcgctcccttgtgcccatttcttgtcgcctcgaagctcac 260 |||| ||| ||||| || || ||||| ||||| || | |||||||||| |||||| Sbjct: 569 ttggaggagatggcgagtgcgcccttatgcccgttccgcgtcgcctcgatgctcac 514 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 gcgatctcctccagcttggagatgatg 327 ||||||||||||||||||| ||||||| Sbjct: 506 gcgatctcctccagcttggcgatgatg 480
>ref|NM_191315.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1425 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Minus Query: 299 ccgcgatctcctccagcttggaga 322 |||||||||||||||||||||||| Sbjct: 1135 ccgcgatctcctccagcttggaga 1112 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||| |||||||||||| Sbjct: 1014 gatgatgtcgaaggcgttcatgctc 990
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Plus Query: 299 ccgcgatctcctccagcttggaga 322 |||||||||||||||||||||||| Sbjct: 118261 ccgcgatctcctccagcttggaga 118284 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||| |||||||||||| Sbjct: 118382 gatgatgtcgaaggcgttcatgctc 118406
>dbj|AK100202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040M01, full insert sequence Length = 1628 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Minus Query: 299 ccgcgatctcctccagcttggaga 322 |||||||||||||||||||||||| Sbjct: 1261 ccgcgatctcctccagcttggaga 1238 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||| |||||||||||| Sbjct: 1140 gatgatgtcgaaggcgttcatgctc 1116
>dbj|AK069231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013G02, full insert sequence Length = 1690 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Minus Query: 299 ccgcgatctcctccagcttggaga 322 |||||||||||||||||||||||| Sbjct: 1253 ccgcgatctcctccagcttggaga 1230 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||| |||||||||||| Sbjct: 1132 gatgatgtcgaaggcgttcatgctc 1108
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Plus Query: 299 ccgcgatctcctccagcttggaga 322 |||||||||||||||||||||||| Sbjct: 28910 ccgcgatctcctccagcttggaga 28933 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||| |||||||||||| Sbjct: 29031 gatgatgtcgaaggcgttcatgctc 29055
>ref|NM_119492.2| Arabidopsis thaliana unknown protein AT4G33380 mRNA, complete cds Length = 1427 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 aggagaggaagagcctgagga 575 ||||||||||||||||||||| Sbjct: 772 aggagaggaagagcctgagga 792
>ref|XM_550254.1| Oryza sativa (japonica cultivar-group), mRNA Length = 597 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 183 gatgatgtcgaacgcgttcaggctc 159
>ref|NM_186856.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1194 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 180 gatgatgtcgaacgcgttcaggctc 156
>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02, complete sequence Length = 75456 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 54991 gatgatgtcgaacgcgttcaagctc 55015
>ref|NM_018416.2| Homo sapiens forkhead box J2 (FOXJ2), mRNA Length = 5499 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 680 ttatttctttgaagcctttct 700 ||||||||||||||||||||| Sbjct: 4569 ttatttctttgaagcctttct 4589
>ref|XM_455030.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E23980g predicted mRNA Length = 1686 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 681 tatttctttgaagcctttctt 701 ||||||||||||||||||||| Sbjct: 1406 tatttctttgaagcctttctt 1386
>emb|AL596276.6| Human DNA sequence from clone RP11-115A15 on chromosome 1 Contains a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene, a ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1) pseudogene and a cytochrome c oxidase subunit V1a polypeptide 1 (COX6A1) pseudogene, complete sequence Length = 129398 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 571 gaggatgatgaagacatggca 591 ||||||||||||||||||||| Sbjct: 87262 gaggatgatgaagacatggca 87242
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 681 tatttctttgaagcctttctt 701 ||||||||||||||||||||| Sbjct: 2132865 tatttctttgaagcctttctt 2132845
>emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 4/8 Length = 349535 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tgctgcttttacccacaataa 26 ||||||||||||||||||||| Sbjct: 172014 tgctgcttttacccacaataa 171994
>emb|AL161978.1|HSM802572 Homo sapiens mRNA; cDNA DKFZp762A1712 (from clone DKFZp762A1712) Length = 3019 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 680 ttatttctttgaagcctttct 700 ||||||||||||||||||||| Sbjct: 2114 ttatttctttgaagcctttct 2134
>gb|AC078852.5| Homo sapiens BAC clone RP11-386I15 from 4, complete sequence Length = 86981 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 559 gaggaagagcctgaggatgat 579 ||||||||||||||||||||| Sbjct: 54975 gaggaagagcctgaggatgat 54995
>dbj|AK092529.1| Homo sapiens cDNA FLJ35210 fis, clone PROST1000085 Length = 2402 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 680 ttatttctttgaagcctttct 700 ||||||||||||||||||||| Sbjct: 1510 ttatttctttgaagcctttct 1530
>gb|AY097415.1| Arabidopsis thaliana AT4g33380/F17M5_140 mRNA, complete cds Length = 987 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 aggagaggaagagcctgagga 575 ||||||||||||||||||||| Sbjct: 600 aggagaggaagagcctgagga 620
>dbj|AB097439.1| Oryza sativa (japonica cultivar-group) transposon AnacC1 DNA, complete sequence Length = 1868 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 808 gatgatgtcgaacgcgttcaggctc 832
>gb|AC022489.7| Homo sapiens BAC clone RP11-671P3 from 4, complete sequence Length = 195923 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 716 ccttgatctgcagaagtgtga 736 ||||||||||||||||||||| Sbjct: 22242 ccttgatctgcagaagtgtga 22262
>gb|AY064143.1| Arabidopsis thaliana AT4g33380/F17M5_140 mRNA, complete cds Length = 1429 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 aggagaggaagagcctgagga 575 ||||||||||||||||||||| Sbjct: 774 aggagaggaagagcctgagga 794
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 8393355 gatgatgtcgaacgcgttcaggctc 8393379
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 6616937 gatgatgtcgaacgcgttcaagctc 6616961
>emb|BX827629.1|CNS0A2VO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS87ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1318 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 aggagaggaagagcctgagga 575 ||||||||||||||||||||| Sbjct: 711 aggagaggaagagcctgagga 731
>emb|BX827602.1|CNS0A2TV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS82ZB03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1290 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 aggagaggaagagcctgagga 575 ||||||||||||||||||||| Sbjct: 720 aggagaggaagagcctgagga 740
>emb|BX826812.1|CNS0A36Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB64ZF08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1249 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 aggagaggaagagcctgagga 575 ||||||||||||||||||||| Sbjct: 637 aggagaggaagagcctgagga 657
>gb|AC006511.5| Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186321 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 680 ttatttctttgaagcctttct 700 ||||||||||||||||||||| Sbjct: 75810 ttatttctttgaagcctttct 75790
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 98453 gatgatgtcgaacgcgttcaggctc 98477
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 3457 gatgatgtcgaacgcgttcaggctc 3433
>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451C06 Length = 151773 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 124418 gatgatgtcgaacgcgttcaggctc 124394
>gb|AF155132.1|AF155132 Homo sapiens FOXJ2 forkhead factor mRNA, complete cds Length = 4873 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 680 ttatttctttgaagcctttct 700 ||||||||||||||||||||| Sbjct: 3975 ttatttctttgaagcctttct 3995
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 108159 gatgatgtcgaacgcgttcaggctc 108135
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 24948 gatgatgtcgaacgcgttcaggctc 24972
>dbj|AK107068.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-E08, full insert sequence Length = 1881 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 1072 gatgatgtcgaacgcgttcaagctc 1048
>gb|AY108681.1| Zea mays PCO122768 mRNA sequence Length = 986 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 355 gatgatgtcgaacgcgttcaggctc 331
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 gatgatgtcgaacgcgttcatgctc 438 |||||||||||||||||||| |||| Sbjct: 16549 gatgatgtcgaacgcgttcaggctc 16525
>emb|AL732539.6| Mouse DNA sequence from clone RP23-255E6 on chromosome 11 Contains the 3' end of the Msi2h gene for Musashi homolog 2 (Drosophila), an eukaryotic translation elongation factor 2 (Eef2) pseudogene and a ribosomal protein L35a (Rpl35a) pseudogene, complete sequence Length = 216688 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 624 gggctcttcggagccatcaaggctg 648 |||||||| |||||||||||||||| Sbjct: 162466 gggctcttgggagccatcaaggctg 162442
>gb|AF038177.1|AF038177 Homo sapiens clone 23899 mRNA sequence Length = 1111 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 680 ttatttctttgaagcctttct 700 ||||||||||||||||||||| Sbjct: 213 ttatttctttgaagcctttct 233 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,002,921 Number of Sequences: 3902068 Number of extensions: 6002921 Number of successful extensions: 131365 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130819 Number of HSP's gapped (non-prelim): 537 length of query: 738 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 715 effective length of database: 17,143,297,704 effective search space: 12257457858360 effective search space used: 12257457858360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)