| Clone Name | rbaal27j13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX monomethyl ester cyclase (Xantha-l) gene, complete cds Length = 2097 Score = 345 bits (174), Expect = 3e-92 Identities = 196/202 (97%), Gaps = 2/202 (0%) Strand = Plus / Minus Query: 1 tgtaaagataggcagagtatgaatcctttttcgacaaattn-gtagacaagcttgggctc 59 ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct: 2004 tgtaaagataggcagag-atgaatcctttttcgacaaattcagtagacaagcttgggctc 1946 Query: 60 aaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcagcgatgat 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1945 aaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcagcgatgat 1886 Query: 120 ctcagacactagttgggcaataagaggaaccctcttcaggttcttcancaggggcaagnc 179 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 1885 ctcagacactagttgggcaataagaggaaccctcttcaggttcttcaccaggggcaagtc 1826 Query: 180 gntggactctcctatagaaatg 201 | |||||||||||||||||||| Sbjct: 1825 gttggactctcctatagaaatg 1804
>ref|NM_188121.1| Oryza sativa (japonica cultivar-group), Ozsa8553 predicted mRNA Length = 1227 Score = 145 bits (73), Expect = 6e-32 Identities = 117/132 (88%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcat 101 ||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct: 1224 gtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattgggggcat 1165 Query: 102 gaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcaggtt 161 |||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| Sbjct: 1164 gaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcaggtt 1105 Query: 162 cttcancagggg 173 ||||| |||||| Sbjct: 1104 cttcaccagggg 1093
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 6e-32 Identities = 117/132 (88%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcat 101 ||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct: 9875237 gtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattgggggcat 9875178 Query: 102 gaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcaggtt 161 |||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| Sbjct: 9875177 gaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcaggtt 9875118 Query: 162 cttcancagggg 173 ||||| |||||| Sbjct: 9875117 cttcaccagggg 9875106
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 145 bits (73), Expect = 6e-32 Identities = 117/132 (88%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcat 101 ||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct: 139487 gtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattgggggcat 139428 Query: 102 gaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcaggtt 161 |||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| Sbjct: 139427 gaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcaggtt 139368 Query: 162 cttcancagggg 173 ||||| |||||| Sbjct: 139367 cttcaccagggg 139356
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 145 bits (73), Expect = 6e-32 Identities = 117/132 (88%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcat 101 ||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct: 11003 gtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattgggggcat 10944 Query: 102 gaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcaggtt 161 |||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| Sbjct: 10943 gaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcaggtt 10884 Query: 162 cttcancagggg 173 ||||| |||||| Sbjct: 10883 cttcaccagggg 10872
>dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014B03, full insert sequence Length = 1691 Score = 145 bits (73), Expect = 6e-32 Identities = 117/132 (88%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcat 101 ||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct: 1272 gtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattgggggcat 1213 Query: 102 gaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcaggtt 161 |||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| Sbjct: 1212 gaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcaggtt 1153 Query: 162 cttcancagggg 173 ||||| |||||| Sbjct: 1152 cttcaccagggg 1141
>dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B09, full insert sequence Length = 618 Score = 145 bits (73), Expect = 6e-32 Identities = 117/132 (88%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcat 101 ||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct: 347 gtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattgggggcat 288 Query: 102 gaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcaggtt 161 |||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| Sbjct: 287 gaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcaggtt 228 Query: 162 cttcancagggg 173 ||||| |||||| Sbjct: 227 cttcaccagggg 216
>dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F10, full insert sequence Length = 1944 Score = 145 bits (73), Expect = 6e-32 Identities = 117/132 (88%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcat 101 ||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct: 1262 gtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattgggggcat 1203 Query: 102 gaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcaggtt 161 |||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| Sbjct: 1202 gaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcaggtt 1143 Query: 162 cttcancagggg 173 ||||| |||||| Sbjct: 1142 cttcaccagggg 1131
>dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E02, full insert sequence Length = 1533 Score = 145 bits (73), Expect = 6e-32 Identities = 117/132 (88%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcat 101 ||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||||||| Sbjct: 1258 gtagacaagctggggctcgaattcagcgaaatcaacagagccagactcgattgggggcat 1199 Query: 102 gaggtacgcagcgatgatctcagacactagttgggcaataagaggaaccctcttcaggtt 161 |||||||||||| |||||||||||||| || ||||| |||||| |||||||||||| Sbjct: 1198 gaggtacgcagcaatgatctcagacaccagagcggcaacgtgaggaatcctcttcaggtt 1139 Query: 162 cttcancagggg 173 ||||| |||||| Sbjct: 1138 cttcaccagggg 1127
>gb|AY108897.1| Zea mays PCO080076 mRNA sequence Length = 1774 Score = 121 bits (61), Expect = 9e-25 Identities = 100/113 (88%) Strand = Plus / Minus Query: 54 gggctcaaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcagc 113 ||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || || Sbjct: 1251 gggctcaaattcggcgaaatcaaccgagccagactcgatggggggcatgaggtaggcggc 1192 Query: 114 gatgatctcagacactagttgggcaataagaggaaccctcttcaggttcttca 166 ||||||||| ||||| || ||| | |||||||| ||||||||||||||||| Sbjct: 1191 gatgatctcggacaccagagaggcgacaagaggaatcctcttcaggttcttca 1139
>ref|NM_115554.2| Arabidopsis thaliana transporter AT3G56950 mRNA, complete cds Length = 1481 Score = 61.9 bits (31), Expect = 7e-07 Identities = 70/83 (84%) Strand = Plus / Plus Query: 43 tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 102 |||||||| || |||||||| ||||| |||||||| ||||||||||| | || |||||| Sbjct: 1222 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 1281 Query: 103 aggtacgcagcgatgatctcaga 125 || || ||||| | ||||||||| Sbjct: 1282 agataagcagccaagatctcaga 1304
>ref|NM_115553.2| Arabidopsis thaliana AT103 (DICARBOXYLATE DIIRON 1) AT3G56940 (AT103) mRNA, complete cds Length = 1602 Score = 61.9 bits (31), Expect = 7e-07 Identities = 70/83 (84%) Strand = Plus / Minus Query: 43 tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 102 |||||||| || |||||||| ||||| |||||||| ||||||||||| | || |||||| Sbjct: 1275 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 1216 Query: 103 aggtacgcagcgatgatctcaga 125 || || ||||| | ||||||||| Sbjct: 1215 agataagcagccaagatctcaga 1193
>emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16 Length = 107271 Score = 61.9 bits (31), Expect = 7e-07 Identities = 70/83 (84%) Strand = Plus / Minus Query: 43 tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 102 |||||||| || |||||||| ||||| |||||||| ||||||||||| | || |||||| Sbjct: 94188 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 94129 Query: 103 aggtacgcagcgatgatctcaga 125 || || ||||| | ||||||||| Sbjct: 94128 agataagcagccaagatctcaga 94106
>emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24I3 Length = 91303 Score = 61.9 bits (31), Expect = 7e-07 Identities = 70/83 (84%) Strand = Plus / Minus Query: 43 tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 102 |||||||| || |||||||| ||||| |||||||| ||||||||||| | || |||||| Sbjct: 6275 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 6216 Query: 103 aggtacgcagcgatgatctcaga 125 || || ||||| | ||||||||| Sbjct: 6215 agataagcagccaagatctcaga 6193
>gb|AF236101.1| Arabidopsis thaliana putative dicarboxylate diiron protein (Crd1) mRNA, complete cds Length = 1407 Score = 61.9 bits (31), Expect = 7e-07 Identities = 70/83 (84%) Strand = Plus / Minus Query: 43 tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 102 |||||||| || |||||||| ||||| |||||||| ||||||||||| | || |||||| Sbjct: 1265 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 1206 Query: 103 aggtacgcagcgatgatctcaga 125 || || ||||| | ||||||||| Sbjct: 1205 agataagcagccaagatctcaga 1183
>gb|U38232.1|ATU38232 Arabidopsis thaliana AT103 mRNA, complete cds Length = 1349 Score = 61.9 bits (31), Expect = 7e-07 Identities = 70/83 (84%) Strand = Plus / Minus Query: 43 tagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggggcatg 102 |||||||| || |||||||| ||||| |||||||| ||||||||||| | || |||||| Sbjct: 1241 tagacaagattaggctcaaactcggcgaaatcaacagagccagactcaacaggaggcatg 1182 Query: 103 aggtacgcagcgatgatctcaga 125 || || ||||| | ||||||||| Sbjct: 1181 agataagcagccaagatctcaga 1159
>gb|AY322552.1| Triticum aestivum putative fatty acid desaturase TAZIP mRNA, partial cds Length = 903 Score = 52.0 bits (26), Expect = 7e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 55 ggctcaaattcggcaaaatcaacggagccagactcgattgggggcatgaggtacgcagcg 114 ||||| |||||||| |||||||| ||||||||||| | || |||||||| || ||||| Sbjct: 902 ggctcgaattcggcgaaatcaacagagccagactcaacaggaggcatgagataagcagcc 843 Query: 115 atgatctcag 124 | |||||||| Sbjct: 842 aagatctcag 833
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence Length = 96930 Score = 50.1 bits (25), Expect = 0.003 Identities = 54/64 (84%) Strand = Plus / Minus Query: 38 attngtagacaagcttgggctcaaattcggcaaaatcaacggagccagactcgattgggg 97 ||| ||| ||||| || || ||||| || ||||||||||| || |||||||||||||| | Sbjct: 95943 attagtaaacaagttttggttcaaactctgcaaaatcaacagatccagactcgattggtg 95884 Query: 98 gcat 101 |||| Sbjct: 95883 gcat 95880
>gb|AC119987.13| Mus musculus chromosome 9, clone RP24-502H5, complete sequence Length = 173716 Score = 40.1 bits (20), Expect = 2.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 150 cctcttcaggttcttcancaggg 172 ||||||||||||||||| ||||| Sbjct: 64529 cctcttcaggttcttcaccaggg 64551
>ref|XM_381007.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00831.1) partial mRNA Length = 2712 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 gcaataagaggaaccctcttcagg 159 ||||||||||||||| |||||||| Sbjct: 2081 gcaataagaggaaccttcttcagg 2058
>gb|AC100506.17| Mus musculus chromosome 9, clone RP23-144D3, complete sequence Length = 198388 Score = 40.1 bits (20), Expect = 2.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 150 cctcttcaggttcttcancaggg 172 ||||||||||||||||| ||||| Sbjct: 21035 cctcttcaggttcttcaccaggg 21013
>gb|AF417577.1|AF417577 Euphorbia esula leucine zipper-containing protein gene, complete cds Length = 5083 Score = 40.1 bits (20), Expect = 2.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 139 ataagaggaaccctcttcaggttcttca 166 ||||| ||||||||||||| |||||||| Sbjct: 4641 ataagtggaaccctcttcaagttcttca 4614
>gb|AC068722.6|AC068722 Homo sapiens chromosome 15 clone CTD-2306A12 map 15q21.1, complete sequence Length = 151924 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 agacaagcttgggctcaaat 63 |||||||||||||||||||| Sbjct: 64006 agacaagcttgggctcaaat 64025
>dbj|AP000752.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-689N19, complete sequence Length = 194140 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 gtagacaagcttgggctcaaattc 65 |||||||||||||| ||||||||| Sbjct: 149099 gtagacaagcttggtctcaaattc 149076
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attcggcaaaatcaacggag 81 |||||||||||||||||||| Sbjct: 3368423 attcggcaaaatcaacggag 3368442 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,010,063 Number of Sequences: 3902068 Number of extensions: 1010063 Number of successful extensions: 68169 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68067 Number of HSP's gapped (non-prelim): 91 length of query: 202 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 180 effective length of database: 17,147,199,772 effective search space: 3086495958960 effective search space used: 3086495958960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)