ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8a15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UVRC_STRCO (Q9Z512) UvrABC system protein C (Protein uvrC) (Exci... 29 9.5
2CXCR2_RAT (P35407) High affinity interleukin-8 receptor B (IL-8R... 29 9.5

>UVRC_STRCO (Q9Z512) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 728

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 70  VSSHQHYPTIEVRRGSETKNTTYFDGYQHS 159
           V+ ++ +P ++V RG + K   YF  Y H+
Sbjct: 108 VTMNEEFPRVQVMRGQKKKGVRYFGPYGHA 137



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>CXCR2_RAT (P35407) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)|
           (GRO/MGSA receptor) (CD182 antigen)
          Length = 359

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -2

Query: 270 LYLIS*RSFCCLRCFVLVALIV---FFCFRLLVVADCLAQAMLVAIKICRIFGF*SSPDF 100
           L ++  RS C +    L+ L +   FF   L V A       +    +C++F F     F
Sbjct: 70  LVILYNRSTCSVTDVYLLNLAIADLFFALTLPVWAASKVNGWIFGSFLCKVFSFLQEITF 129

Query: 99  YSWVMLMA 76
           YS V+L+A
Sbjct: 130 YSSVLLLA 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,723,366
Number of Sequences: 219361
Number of extensions: 1397287
Number of successful extensions: 3094
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3091
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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