| Clone Name | rbaal8a15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_510500.1| PREDICTED: Pan troglodytes similar to serologically defined breast cancer antigen NY-BR-20 (LOC453534), mRNA Length = 2253 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 2122 caacattacccaactatagaag 2143
>ref|NM_001031733.1| Homo sapiens calmodulin-like 4 (CALML4), transcript variant 1, mRNA Length = 731 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 609 caacattacccaactatagaag 630
>ref|NM_033429.1| Homo sapiens calmodulin-like 4 (CALML4), transcript variant 2, mRNA Length = 3914 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 1073 caacattacccaactatagaag 1094
>gb|BC009516.2| Homo sapiens calmodulin-like 4, transcript variant 1, mRNA (cDNA clone MGC:4809 IMAGE:3546033), complete cds Length = 731 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 609 caacattacccaactatagaag 630
>gb|AF308287.1| Homo sapiens serologically defined breast cancer antigen NY-BR-20 mRNA, partial cds Length = 984 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 881 caacattacccaactatagaag 902
>emb|BX640702.1|HSM806772 Homo sapiens mRNA; cDNA DKFZp686A09136 (from clone DKFZp686A09136) Length = 3722 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 450 caacattacccaactatagaag 471
>gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, complete sequence Length = 171605 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 82546 caacattacccaactatagaag 82525
>dbj|AK092628.1| Homo sapiens cDNA FLJ35309 fis, clone PROST2010219, weakly similar to CALMODULIN Length = 2364 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 514 caacattacccaactatagaag 535
>emb|CR598967.1| full-length cDNA clone CS0DE008YB01 of Placenta of Homo sapiens (human) Length = 1445 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 1341 caacattacccaactatagaag 1362
>gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, complete sequence Length = 173919 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 142756 caacattacccaactatagaag 142777
>emb|BX640817.1|HSM806927 Homo sapiens mRNA; cDNA DKFZp686D05174 (from clone DKFZp686D05174) Length = 3914 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 82 caacattacccaactatagaag 103 |||||||||||||||||||||| Sbjct: 1073 caacattacccaactatagaag 1094
>gb|M28072.1|RABMCP1AA Rabbit macrophage cationic peptide 1 (MCP-1) gene, complete cds Length = 2097 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 acaacagaagcttcttcaagagatc 262 ||||||| ||||||||||||||||| Sbjct: 833 acaacagcagcttcttcaagagatc 857
>gb|AC063953.13| Homo sapiens 3 BAC RP11-317I15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185259 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tacgacatattttgatggct 148 |||||||||||||||||||| Sbjct: 98076 tacgacatattttgatggct 98057
>ref|XM_624045.1| PREDICTED: Apis mellifera similar to casein kinase II beta subunit (LOC551655), mRNA Length = 718 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 atccaattcatcatcaggtt 370 |||||||||||||||||||| Sbjct: 241 atccaattcatcatcaggtt 222
>gb|AC073082.6| Homo sapiens BAC clone RP11-310N16 from 2, complete sequence Length = 177047 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 aagcatctaagacaacagaa 246 |||||||||||||||||||| Sbjct: 93174 aagcatctaagacaacagaa 93155
>gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, complete sequence Length = 167471 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 caataatccctaacctcttt 65 |||||||||||||||||||| Sbjct: 102841 caataatccctaacctcttt 102822
>dbj|AB008270.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG13 Length = 50641 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 atccaccaatccaattcatcatca 366 |||||||||||| ||||||||||| Sbjct: 8795 atccaccaatcctattcatcatca 8818
>emb|AL732611.21| Mouse DNA sequence from clone RP23-135A21 on chromosome 4, complete sequence Length = 143036 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 caatcaatgctacaagcacaaagc 230 |||||||||||| ||||||||||| Sbjct: 37447 caatcaatgctaaaagcacaaagc 37470
>gb|M28073.1|RABMCP1AB Rabbit macrophage cationic peptide 2 (MCP-2) gene, complete cds Length = 2133 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 agacaacagaagcttcttcaagag 259 |||||||||||| ||||||||||| Sbjct: 837 agacaacagaagtttcttcaagag 860 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,337,951 Number of Sequences: 3902068 Number of extensions: 4337951 Number of successful extensions: 72702 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72675 Number of HSP's gapped (non-prelim): 27 length of query: 538 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 515 effective length of database: 17,143,297,704 effective search space: 8828798317560 effective search space used: 8828798317560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)