ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8a15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_510500.1| PREDICTED: Pan troglodytes similar to serologic... 44 0.47
2ref|NM_001031733.1| Homo sapiens calmodulin-like 4 (CALML4), tra... 44 0.47
3ref|NM_033429.1| Homo sapiens calmodulin-like 4 (CALML4), transc... 44 0.47
4gb|BC009516.2| Homo sapiens calmodulin-like 4, transcript varian... 44 0.47
5gb|AF308287.1| Homo sapiens serologically defined breast cancer ... 44 0.47
6emb|BX640702.1|HSM806772 Homo sapiens mRNA; cDNA DKFZp686A09136 ... 44 0.47
7gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, c... 44 0.47
8dbj|AK092628.1| Homo sapiens cDNA FLJ35309 fis, clone PROST20102... 44 0.47
9emb|CR598967.1| full-length cDNA clone CS0DE008YB01 of Placenta ... 44 0.47
10gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, com... 44 0.47
11emb|BX640817.1|HSM806927 Homo sapiens mRNA; cDNA DKFZp686D05174 ... 44 0.47
12gb|M28072.1|RABMCP1AA Rabbit macrophage cationic peptide 1 (MCP-... 42 1.8
13gb|AC063953.13| Homo sapiens 3 BAC RP11-317I15 (Roswell Park Can... 40 7.3
14ref|XM_624045.1| PREDICTED: Apis mellifera similar to casein kin... 40 7.3
15gb|AC073082.6| Homo sapiens BAC clone RP11-310N16 from 2, comple... 40 7.3
16gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, comple... 40 7.3
17dbj|AB008270.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.3
18emb|AL732611.21| Mouse DNA sequence from clone RP23-135A21 on ch... 40 7.3
19gb|M28073.1|RABMCP1AB Rabbit macrophage cationic peptide 2 (MCP-... 40 7.3

>ref|XM_510500.1| PREDICTED: Pan troglodytes similar to serologically defined breast
            cancer antigen NY-BR-20 (LOC453534), mRNA
          Length = 2253

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 82   caacattacccaactatagaag 103
            ||||||||||||||||||||||
Sbjct: 2122 caacattacccaactatagaag 2143



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>ref|NM_001031733.1| Homo sapiens calmodulin-like 4 (CALML4), transcript variant 1, mRNA
          Length = 731

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 82  caacattacccaactatagaag 103
           ||||||||||||||||||||||
Sbjct: 609 caacattacccaactatagaag 630



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>ref|NM_033429.1| Homo sapiens calmodulin-like 4 (CALML4), transcript variant 2, mRNA
          Length = 3914

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 82   caacattacccaactatagaag 103
            ||||||||||||||||||||||
Sbjct: 1073 caacattacccaactatagaag 1094



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>gb|BC009516.2| Homo sapiens calmodulin-like 4, transcript variant 1, mRNA (cDNA
           clone MGC:4809 IMAGE:3546033), complete cds
          Length = 731

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 82  caacattacccaactatagaag 103
           ||||||||||||||||||||||
Sbjct: 609 caacattacccaactatagaag 630



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>gb|AF308287.1| Homo sapiens serologically defined breast cancer antigen NY-BR-20
           mRNA, partial cds
          Length = 984

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 82  caacattacccaactatagaag 103
           ||||||||||||||||||||||
Sbjct: 881 caacattacccaactatagaag 902



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>emb|BX640702.1|HSM806772 Homo sapiens mRNA; cDNA DKFZp686A09136 (from clone DKFZp686A09136)
          Length = 3722

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 82  caacattacccaactatagaag 103
           ||||||||||||||||||||||
Sbjct: 450 caacattacccaactatagaag 471



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>gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, complete sequence
          Length = 171605

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 82    caacattacccaactatagaag 103
             ||||||||||||||||||||||
Sbjct: 82546 caacattacccaactatagaag 82525



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>dbj|AK092628.1| Homo sapiens cDNA FLJ35309 fis, clone PROST2010219, weakly similar
           to CALMODULIN
          Length = 2364

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 82  caacattacccaactatagaag 103
           ||||||||||||||||||||||
Sbjct: 514 caacattacccaactatagaag 535



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>emb|CR598967.1| full-length cDNA clone CS0DE008YB01 of Placenta of Homo sapiens
            (human)
          Length = 1445

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 82   caacattacccaactatagaag 103
            ||||||||||||||||||||||
Sbjct: 1341 caacattacccaactatagaag 1362



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>gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, complete sequence
          Length = 173919

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 82     caacattacccaactatagaag 103
              ||||||||||||||||||||||
Sbjct: 142756 caacattacccaactatagaag 142777



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>emb|BX640817.1|HSM806927 Homo sapiens mRNA; cDNA DKFZp686D05174 (from clone DKFZp686D05174)
          Length = 3914

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 82   caacattacccaactatagaag 103
            ||||||||||||||||||||||
Sbjct: 1073 caacattacccaactatagaag 1094



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>gb|M28072.1|RABMCP1AA Rabbit macrophage cationic peptide 1 (MCP-1) gene, complete cds
          Length = 2097

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 238 acaacagaagcttcttcaagagatc 262
           ||||||| |||||||||||||||||
Sbjct: 833 acaacagcagcttcttcaagagatc 857



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>gb|AC063953.13| Homo sapiens 3 BAC RP11-317I15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 185259

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   tacgacatattttgatggct 148
             ||||||||||||||||||||
Sbjct: 98076 tacgacatattttgatggct 98057



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>ref|XM_624045.1| PREDICTED: Apis mellifera similar to casein kinase II beta subunit
           (LOC551655), mRNA
          Length = 718

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 351 atccaattcatcatcaggtt 370
           ||||||||||||||||||||
Sbjct: 241 atccaattcatcatcaggtt 222



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>gb|AC073082.6| Homo sapiens BAC clone RP11-310N16 from 2, complete sequence
          Length = 177047

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   aagcatctaagacaacagaa 246
             ||||||||||||||||||||
Sbjct: 93174 aagcatctaagacaacagaa 93155



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>gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, complete sequence
          Length = 167471

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     caataatccctaacctcttt 65
              ||||||||||||||||||||
Sbjct: 102841 caataatccctaacctcttt 102822



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>dbj|AB008270.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG13
          Length = 50641

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 343  atccaccaatccaattcatcatca 366
            |||||||||||| |||||||||||
Sbjct: 8795 atccaccaatcctattcatcatca 8818



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>emb|AL732611.21| Mouse DNA sequence from clone RP23-135A21 on chromosome 4, complete
             sequence
          Length = 143036

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   caatcaatgctacaagcacaaagc 230
             |||||||||||| |||||||||||
Sbjct: 37447 caatcaatgctaaaagcacaaagc 37470



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>gb|M28073.1|RABMCP1AB Rabbit macrophage cationic peptide 2 (MCP-2) gene, complete cds
          Length = 2133

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 236 agacaacagaagcttcttcaagag 259
           |||||||||||| |||||||||||
Sbjct: 837 agacaacagaagtttcttcaagag 860


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,337,951
Number of Sequences: 3902068
Number of extensions: 4337951
Number of successful extensions: 72702
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72675
Number of HSP's gapped (non-prelim): 27
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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