ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal27j10 |
|---|---|
| Clone Library Name | barley_pub |
>MAGD1_MOUSE (Q9QYH6) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (Dlxin-1) Length = 775 Score = 33.9 bits (76), Expect = 0.67 Identities = 11/35 (31%), Positives = 14/35 (40%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEWS 613 P W W P W G +W P W+ +WS Sbjct: 380 PPSWQAPPSWQSPQDWQGPPDWQVPPDWSMPPDWS 414 Score = 33.5 bits (75), Expect = 0.88 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%) Frame = +2 Query: 509 PAW-----WHGQSEWSPPAWWHGQSEWSPPAWWNGQSEWSP 616 P+W W G +W P W +WS P+ W +W P Sbjct: 387 PSWQSPQDWQGPPDWQVPPDWSMPPDWSFPSDWPFPPDWIP 427 Score = 33.1 bits (74), Expect = 1.1 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W +W P W +WS P W+ S+W Sbjct: 386 PPSWQSPQDWQGPPDWQVPPDWSMPPDWSFPSDW 419 Score = 32.3 bits (72), Expect = 2.0 Identities = 10/34 (29%), Positives = 11/34 (32%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W W P W W P W G +W Sbjct: 368 PMAWQSTPGWQSPPSWQAPPSWQSPQDWQGPPDW 401 Score = 30.4 bits (67), Expect = 7.4 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEW-SPPAW-----WNGQSEW 610 P W G W P W W SPP+W W +W Sbjct: 356 PIVWPGPIVWPNPMAWQSTPGWQSPPSWQAPPSWQSPQDW 395
>MAGD1_RAT (Q9ES73) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (Sertoli cell necdin-related gene 1) (SNERG-1) Length = 775 Score = 33.5 bits (75), Expect = 0.88 Identities = 11/35 (31%), Positives = 14/35 (40%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEWS 613 P W W P W G +W P W+ +WS Sbjct: 380 PPSWQAPPSWQSPQDWQGPPDWQLPPDWSMPPDWS 414 Score = 32.7 bits (73), Expect = 1.5 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W +W P W +WS P W+ S+W Sbjct: 386 PPSWQSPQDWQGPPDWQLPPDWSMPPDWSFPSDW 419 Score = 32.3 bits (72), Expect = 2.0 Identities = 10/34 (29%), Positives = 11/34 (32%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W W P W W P W G +W Sbjct: 368 PMAWQSTPGWQSPPSWQAPPSWQSPQDWQGPPDW 401 Score = 30.4 bits (67), Expect = 7.4 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEW-SPPAW-----WNGQSEW 610 P W G W P W W SPP+W W +W Sbjct: 356 PIVWPGPIVWPNPMAWQSTPGWQSPPSWQAPPSWQSPQDW 395
>LIPB_SYNEL (Q8DKM7) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 226 Score = 32.3 bits (72), Expect = 2.0 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = +2 Query: 50 HWYIHQVQTVVMEALHRHSLKLER 121 HWY+HQ++ V+++ L + +K ER Sbjct: 104 HWYLHQLEEVIIQTLRHYGIKGER 127
>SCN4A_RAT (P15390) Sodium channel protein type 4 alpha subunit (Sodium| channel protein type IV alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.4) (Sodium channel protein, skeletal muscle alpha-subunit) (Mu-1) Length = 1840 Score = 32.3 bits (72), Expect = 2.0 Identities = 10/32 (31%), Positives = 13/32 (40%) Frame = +2 Query: 518 WHGQSEWSPPAWWHGQSEWSPPAWWNGQSEWS 613 W+G W W+G W WN Q W+ Sbjct: 294 WYGNDTWYSNDTWYGNDTWYINDTWNSQESWA 325
>SCN4A_HUMAN (P35499) Sodium channel protein type 4 alpha subunit (Sodium| channel protein type IV alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.4) (Sodium channel protein, skeletal muscle alpha-subunit) (SkM1) Length = 1836 Score = 32.3 bits (72), Expect = 2.0 Identities = 9/32 (28%), Positives = 13/32 (40%) Frame = +2 Query: 518 WHGQSEWSPPAWWHGQSEWSPPAWWNGQSEWS 613 W+G W W+G W WN + W+ Sbjct: 300 WYGNDTWYGNEMWYGNDSWYANDTWNSHASWA 331
>DPB3_SCHPO (Q10315) DNA polymerase epsilon subunit C (EC 2.7.7.7) (DNA| polymerase II subunit C) Length = 199 Score = 32.0 bits (71), Expect = 2.5 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -3 Query: 741 DAIXEETAAAESRVETIEDTVMNDAVGEEPEAVPVKKQS*DHGDHSD 601 + + EE + T E V + GEE EA +K S DHG+ SD Sbjct: 140 NTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKASVDHGNFSD 186
>STAU1_HUMAN (O95793) Double-stranded RNA-binding protein Staufen homolog 1| Length = 577 Score = 32.0 bits (71), Expect = 2.5 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = -3 Query: 795 AAVPLETKGKTMENTSLNDA-IXEETAAAESRVETIEDTVMNDAVGEEPEAVPVKKQS 625 +++P E G+ ++N++L A I +AAAES T+E + +G++P PV S Sbjct: 40 SSLPSENAGRPIQNSALPSASITSTSAAAESITPTVELNALCMKLGKKPMYKPVDPYS 97
>MAGD1_PIG (Q6ITT4) Melanoma-associated antigen D1 (MAGE-D1 antigen)| Length = 784 Score = 31.2 bits (69), Expect = 4.3 Identities = 10/34 (29%), Positives = 11/34 (32%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W W P W W P W G +W Sbjct: 371 PVVWPNPLAWQNPPGWQTPPGWQTPPGWQGPPDW 404 Score = 30.8 bits (68), Expect = 5.7 Identities = 10/34 (29%), Positives = 11/34 (32%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W W P W W P W G +W Sbjct: 377 PLAWQNPPGWQTPPGWQTPPGWQGPPDWQGPPDW 410 Score = 30.4 bits (67), Expect = 7.4 Identities = 10/34 (29%), Positives = 12/34 (35%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W W P W G +W P W +W Sbjct: 383 PPGWQTPPGWQTPPGWQGPPDWQGPPDWPLPPDW 416
>YKJ5_YEAST (P28320) 32.3 kDa protein in CWP1-MBR1 intergenic region| Length = 278 Score = 31.2 bits (69), Expect = 4.3 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = -1 Query: 356 DDDRN--TGVTDEKEQLKEMVQKLLASGNEQMGVIAELGDKVKSLERKLA 213 +DD N T V E L+ +V++ NE+MG+ + DK+ LE++LA Sbjct: 122 NDDLNAKTAVESIDETLQRLVREKEMEQNEKMGIKEQADDKMDLLEKRLA 171
>MAGD1_HUMAN (Q9Y5V3) Melanoma-associated antigen D1 (MAGE-D1 antigen)| (Neurotrophin receptor-interacting MAGE homolog) (MAGE tumor antigen CCF) Length = 778 Score = 31.2 bits (69), Expect = 4.3 Identities = 10/34 (29%), Positives = 11/34 (32%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W W P W W P W G +W Sbjct: 365 PVVWPNPLAWQNPPGWQTPPGWQTPPGWQGPPDW 398 Score = 30.8 bits (68), Expect = 5.7 Identities = 10/34 (29%), Positives = 11/34 (32%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W W P W W P W G +W Sbjct: 371 PLAWQNPPGWQTPPGWQTPPGWQGPPDWQGPPDW 404 Score = 30.4 bits (67), Expect = 7.4 Identities = 10/34 (29%), Positives = 12/34 (35%) Frame = +2 Query: 509 PAWWHGQSEWSPPAWWHGQSEWSPPAWWNGQSEW 610 P W W P W G +W P W +W Sbjct: 377 PPGWQTPPGWQTPPGWQGPPDWQGPPDWPLPPDW 410
>NMUR2_RAT (Q9ESQ4) Neuromedin U receptor 2 (NMU-R2) (G-protein coupled| receptor TGR-1) (G-protein-coupled receptor FM-4) Length = 395 Score = 30.8 bits (68), Expect = 5.7 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -2 Query: 166 PGPTTCTEERP*LICSLKLQAVSM*CFHYYCLHLVYIPMLHYV 38 PG TCT +P + +L +QA S F +Y L + I +L+Y+ Sbjct: 191 PGSATCTVTKPMWVYNLIIQATS---FLFYILPMTLISVLYYL 230
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 30.8 bits (68), Expect = 5.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -3 Query: 561 PCHHAGGDHSD*PCHHAGRDCSMCNSSKFCCTCTRSRQAG 442 PCHHAG + D H +C+ C +CT+ + AG Sbjct: 210 PCHHAGRSYPD--GHLMQEECNKCECKNGNWSCTQRKCAG 247
>KCNH7_HUMAN (Q9NS40) Potassium voltage-gated channel subfamily H member 7| (Voltage-gated potassium channel subunit Kv11.3) (Ether-a-go-go-related gene potassium channel 3) (HERG-3) (Ether-a-go-go-related protein 3) (Eag-related protein 3) Length = 1196 Score = 30.8 bits (68), Expect = 5.7 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = +3 Query: 639 LVQLQAPPQLHHSSQYLQWSRLCFPLLQSPLQLHHS 746 LV + P L HSS QW RL +LQS QL HS Sbjct: 228 LVNISGP--LDHSSPKRQWDRLYPDMLQSSSQLSHS 261
>DPO5_YEAST (P39985) DNA polymerase V (EC 2.7.7.7) (POL V)| Length = 1022 Score = 30.4 bits (67), Expect = 7.4 Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 15/112 (13%) Frame = -1 Query: 368 DNGGDDDRNTGVTDEK-----EQLKEMVQK------LLASGNEQMGVIAELGDKVKSLER 222 D+GGDD+ + DEK +QL E+ ++ +++GN++ + + + V S + Sbjct: 790 DDGGDDEDEESMDDEKMMELDDQLSEIFKRRKEALSSISTGNQRKFEVKQSRENVISFKH 849 Query: 221 K----LAVHKRRRPKVRVQHRPARANDVH*RTAMIDLFSQASGCVYVMLPLL 78 + LAV+ + K+ + ++ +N +L S VY ++P+L Sbjct: 850 RVVDMLAVYVKYCEKLTLANKSEHSN---------NLGGSLSKLVYFIIPML 892
>TIG_SALTY (P66932) Trigger factor (TF)| Length = 432 Score = 30.4 bits (67), Expect = 7.4 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 326 EKEQLKEMVQKLLASGNEQMGVIAELGDKV-KSLERKLAVHKRRRPKVRVQHRPARANDV 150 E+ +L E+ ++ + + G +A L +V K++ER+L R R K + +AND+ Sbjct: 241 EERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRVKSQAIEGLVKANDI 300 Query: 149 H*RTAMID 126 +A+ID Sbjct: 301 DVPSALID 308
>TIG_SALTI (P66933) Trigger factor (TF)| Length = 432 Score = 30.4 bits (67), Expect = 7.4 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 326 EKEQLKEMVQKLLASGNEQMGVIAELGDKV-KSLERKLAVHKRRRPKVRVQHRPARANDV 150 E+ +L E+ ++ + + G +A L +V K++ER+L R R K + +AND+ Sbjct: 241 EERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRVKSQAIEGLVKANDI 300 Query: 149 H*RTAMID 126 +A+ID Sbjct: 301 DVPSALID 308
>PPN1_YARLI (Q6CEE7) Endopolyphosphatase (EC 3.6.1.10)| Length = 747 Score = 30.4 bits (67), Expect = 7.4 Identities = 16/60 (26%), Positives = 30/60 (50%) Frame = -1 Query: 368 DNGGDDDRNTGVTDEKEQLKEMVQKLLASGNEQMGVIAELGDKVKSLERKLAVHKRRRPK 189 DN GDDD + D + +E +++ +A+ N + G +A + +K + AV P+ Sbjct: 519 DNDGDDDEDENEDDPEMLTEEAIKEGVANINPETGTLASIFGGLKFWKSSTAVATSSEPE 578
>KCNH7_RAT (O54852) Potassium voltage-gated channel subfamily H member 7| (Voltage-gated potassium channel subunit Kv11.3) (Ether-a-go-go-related gene potassium channel 3) (Ether-a-go-go-related protein 3) (Eag-related protein 3) Length = 1195 Score = 30.4 bits (67), Expect = 7.4 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = +3 Query: 639 LVQLQAPPQLHHSSQYLQWSRLCFPLLQSPLQLHHS 746 LV + P L HSS QW RL +LQS QL HS Sbjct: 228 LVNISGP--LDHSSPKRQWDRLYPDMLQSSSQLTHS 261
>KCNH7_MOUSE (Q9ER47) Potassium voltage-gated channel subfamily H member 7| (Voltage-gated potassium channel subunit Kv11.3) (Ether-a-go-go-related gene potassium channel 3) (Ether-a-go-go-related protein 3) (Eag-related protein 3) Length = 1195 Score = 30.4 bits (67), Expect = 7.4 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = +3 Query: 639 LVQLQAPPQLHHSSQYLQWSRLCFPLLQSPLQLHHS 746 LV + P L HSS QW RL +LQS QL HS Sbjct: 228 LVNISGP--LDHSSPKRQWDRLYPDMLQSSSQLTHS 261
>ARGD_SALTY (P40732) Acetylornithine/succinyldiaminopimelate aminotransferase| (EC 2.6.1.11) (EC 2.6.1.17) (ACOAT) (Succinyldiaminopimelate transferase) (DapATase) Length = 404 Score = 30.0 bits (66), Expect = 9.7 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = +3 Query: 132 HGRSSVHVVGPGWPVLHPHFGPPPLVHSELPLQRLHLVAQLCDD 263 HGRS V G P FGP P +P LH V + DD Sbjct: 141 HGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDD 184
>ARGD_SALTI (Q8Z1Z3) Acetylornithine/succinyldiaminopimelate aminotransferase| (EC 2.6.1.11) (EC 2.6.1.17) (ACOAT) (Succinyldiaminopimelate transferase) (DapATase) Length = 404 Score = 30.0 bits (66), Expect = 9.7 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = +3 Query: 132 HGRSSVHVVGPGWPVLHPHFGPPPLVHSELPLQRLHLVAQLCDD 263 HGRS V G P FGP P +P LH V + DD Sbjct: 141 HGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDD 184
>FTZF1_DROME (P33244) Nuclear hormone receptor FTZ-F1 (FTZ-F1 alpha)| Length = 1027 Score = 30.0 bits (66), Expect = 9.7 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 14/83 (16%) Frame = +3 Query: 516 GGMVSQSGLHRHGGMVSQSGLHRHG----------GMVSQSGLHGLNSAFSLVQ-LQAPP 662 GG S GLHR+GG S H G + SG H ++A +L++ L+ P Sbjct: 737 GGTNSNDGLHRNGGN-GNSSCHEAGIGSLQNTADSKLCFDSGTHPSSTADALIEPLRVSP 795 Query: 663 QLHHSSQYL---QWSRLCFPLLQ 722 + Q + +W F LLQ Sbjct: 796 MIREFVQSIDDREWQTQLFALLQ 818
>ARGD_ECOLI (P18335) Acetylornithine/succinyldiaminopimelate aminotransferase| (EC 2.6.1.11) (EC 2.6.1.17) (ACOAT) (Succinyldiaminopimelate transferase) (DapATase) Length = 405 Score = 30.0 bits (66), Expect = 9.7 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = +3 Query: 132 HGRSSVHVVGPGWPVLHPHFGPPPLVHSELPLQRLHLVAQLCDD 263 HGRS V G P FGP P +P LH V + DD Sbjct: 141 HGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDD 184
>ARGD_ECOL6 (P59317) Acetylornithine/succinyldiaminopimelate aminotransferase| (EC 2.6.1.11) (EC 2.6.1.17) (ACOAT) (Succinyldiaminopimelate transferase) (DapATase) Length = 405 Score = 30.0 bits (66), Expect = 9.7 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = +3 Query: 132 HGRSSVHVVGPGWPVLHPHFGPPPLVHSELPLQRLHLVAQLCDD 263 HGRS V G P FGP P +P LH V + DD Sbjct: 141 HGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDD 184
>TIG_SALPA (Q5PFN3) Trigger factor (TF)| Length = 432 Score = 30.0 bits (66), Expect = 9.7 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -1 Query: 326 EKEQLKEMVQKLLASGNEQMGVIAELGDKV-KSLERKLAVHKRRRPKVRVQHRPARANDV 150 E+ +L E+ ++ + + G +A L +V K++ER+L R R K + +AND+ Sbjct: 241 EERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMERELKGAVRNRVKSQAIEGLVKANDI 300 Query: 149 H*RTAMID 126 A+ID Sbjct: 301 DVPAALID 308
>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 317 Score = 30.0 bits (66), Expect = 9.7 Identities = 15/68 (22%), Positives = 33/68 (48%) Frame = -1 Query: 359 GDDDRNTGVTDEKEQLKEMVQKLLASGNEQMGVIAELGDKVKSLERKLAVHKRRRPKVRV 180 GD+D ++ + L A ++Q GV+ L + LE K+A K+++ ++ Sbjct: 139 GDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKA 198 Query: 179 QHRPARAN 156 + + A+ + Sbjct: 199 RAQSAKTS 206
>ARGD_SHIFL (P59321) Acetylornithine/succinyldiaminopimelate aminotransferase| (EC 2.6.1.11) (EC 2.6.1.17) (ACOAT) (Succinyldiaminopimelate transferase) (DapATase) Length = 406 Score = 30.0 bits (66), Expect = 9.7 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = +3 Query: 132 HGRSSVHVVGPGWPVLHPHFGPPPLVHSELPLQRLHLVAQLCDD 263 HGRS V G P FGP P +P LH V + DD Sbjct: 142 HGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDD 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,367,335 Number of Sequences: 219361 Number of extensions: 2006804 Number of successful extensions: 7871 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 6828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7792 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 9558228750 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
