ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal27h17 |
|---|---|
| Clone Library Name | barley_pub |
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 63.5 bits (153), Expect = 5e-10 Identities = 31/77 (40%), Positives = 43/77 (55%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +++V SY +E +L FA++G D+ TG RGFGF+ LE D + AAI A Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 368 CDETEWNGRIILVEKSK 318 D EW GR + V K+K Sbjct: 62 LDGAEWMGRDLKVNKAK 78
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 58.5 bits (140), Expect = 2e-08 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Frame = -3 Query: 602 RCWSPPANRKTGLGK-----PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRT 438 R SP +NR+ G P L V G S TTER+L + F+++G D+RT Sbjct: 97 RSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRT 156 Query: 437 GDSRGFGFLSLEKDEDADAAIRACDETEWNGRIILVEKS 321 G SRGF F+ E+ +D+ A+ + E +GR I V+ S Sbjct: 157 GRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 58.5 bits (140), Expect = 2e-08 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Frame = -3 Query: 602 RCWSPPANRKTGLGK-----PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRT 438 R SP +NR+ G P L V G S TTER+L + F+++G D+RT Sbjct: 95 RSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRT 154 Query: 437 GDSRGFGFLSLEKDEDADAAIRACDETEWNGRIILVEKS 321 G SRGF F+ E+ +D+ A+ + E +GR I V+ S Sbjct: 155 GRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 193
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 58.5 bits (140), Expect = 2e-08 Identities = 34/90 (37%), Positives = 50/90 (55%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P + G G +LFV+G + E EL++ F+KFG R+ T SRGFGFLS Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSK 318 E+A +AI + E+ GR++ V+K+K Sbjct: 149 FSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 55.8 bits (133), Expect = 1e-07 Identities = 27/76 (35%), Positives = 44/76 (57%) Frame = -3 Query: 542 FVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACD 363 FV G ++AT ER LE F++FG D+ TG SRGFGF++ + ++ AI + Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 362 ETEWNGRIILVEKSKA 315 + +GR I V ++++ Sbjct: 71 GQDLDGRSITVNEAQS 86
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/75 (38%), Positives = 45/75 (60%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G S+ T E+ LE+ F+K+G +D+ T SRGFGF++ E +DA A+ A Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 365 DETEWNGRIILVEKS 321 + +GR I V+++ Sbjct: 68 NGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/75 (38%), Positives = 45/75 (60%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G S+ T E+ LE+ F+K+G +D+ T SRGFGF++ E +DA A+ A Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 365 DETEWNGRIILVEKS 321 + +GR I V+++ Sbjct: 68 NGKSVDGRQIRVDQA 82
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 55.5 bits (132), Expect = 1e-07 Identities = 30/72 (41%), Positives = 37/72 (51%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LF+ G S+ T + L FA FG D+ TG SRGFGF++ + A AAI Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 Query: 365 DETEWNGRIILV 330 D E NGR I V Sbjct: 97 DGKELNGRHIRV 108
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/76 (35%), Positives = 45/76 (59%) Frame = -3 Query: 542 FVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACD 363 FV G ++AT + ELE+ F++FG D+ TG SRGFGF++ + ++ AI + Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 362 ETEWNGRIILVEKSKA 315 E +GR I V ++++ Sbjct: 69 GKELDGRTITVNEAQS 84
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 55.5 bits (132), Expect = 1e-07 Identities = 30/83 (36%), Positives = 45/83 (54%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 +PG+ LF+ G + T E+ LE F K+G +D+ T SRGF F++LE DA Sbjct: 6 RPGK-LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKD 64 Query: 380 AIRACDETEWNGRIILVEKSKAP 312 A R + +G+ I VE++ P Sbjct: 65 AARDMNGKSLDGKAIKVEQATKP 87
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/75 (38%), Positives = 45/75 (60%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G S+ T E+ LE+ F+K+G +D+ T SRGFGF++ E +DA A+ A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 365 DETEWNGRIILVEKS 321 + +GR I V+++ Sbjct: 68 NGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/75 (38%), Positives = 45/75 (60%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G S+ T E+ LE+ F+K+G +D+ T SRGFGF++ E +DA A+ A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 365 DETEWNGRIILVEKS 321 + +GR I V+++ Sbjct: 68 NGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/75 (38%), Positives = 45/75 (60%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G S+ T E+ LE+ F+K+G +D+ T SRGFGF++ E +DA A+ A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 365 DETEWNGRIILVEKS 321 + +GR I V+++ Sbjct: 68 NGKSVDGRQIRVDQA 82
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/87 (32%), Positives = 46/87 (52%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P N + G + LFVA +Y TTE +L ++F +G +KR+G RG+ F+ Sbjct: 91 PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIE 150 Query: 407 LEKDEDADAAIRACDETEWNGRIILVE 327 E + D +A + D + +GR +LV+ Sbjct: 151 YEHERDMHSAYKHADGKKIDGRRVLVD 177
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 54.7 bits (130), Expect = 2e-07 Identities = 29/85 (34%), Positives = 46/85 (54%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 +PG+ LF+ G + T E+ LE F K+G +D+ T SRGF F++ E DA Sbjct: 6 RPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64 Query: 380 AIRACDETEWNGRIILVEKSKAPAW 306 A R + +G+ I VE++ P++ Sbjct: 65 AARDMNGKSLDGKAIKVEQATKPSF 89
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/76 (34%), Positives = 44/76 (57%) Frame = -3 Query: 542 FVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACD 363 FV G ++AT + LE+ F++FG D+ TG SRGFGF++ + ++ AI + Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 362 ETEWNGRIILVEKSKA 315 E +GR I V ++++ Sbjct: 69 GQELDGRNITVNEAQS 84
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/68 (38%), Positives = 35/68 (51%) Frame = -3 Query: 575 KTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKD 396 K L K +F+ G ++ TTE L + F K+G +D TG SRGFGFLS EK Sbjct: 151 KADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP 210 Query: 395 EDADAAIR 372 D ++ Sbjct: 211 SSVDEVVK 218 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/60 (36%), Positives = 31/60 (51%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +FV G +E E+ F+++G DK TG SRGFGF++ + ADA R C Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY---DSADAVDRVC 301
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 54.3 bits (129), Expect = 3e-07 Identities = 31/79 (39%), Positives = 41/79 (51%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LFV G S+ TTE+EL F K+G D +TG SRGF F+ E D + Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAID-KVS 114 Query: 371 ACDETEWNGRIILVEKSKA 315 A DE N + + +K+KA Sbjct: 115 AADEHIINSKKVDPKKAKA 133 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/65 (24%), Positives = 30/65 (46%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P K GK +FV G + ++ E++ F +FG DK+ +GF F++ Sbjct: 128 PKKAKARHGK----IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFIT 183 Query: 407 LEKDE 393 + ++ Sbjct: 184 FDSEQ 188
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 53.9 bits (128), Expect = 4e-07 Identities = 27/79 (34%), Positives = 45/79 (56%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 GRNL+V+G S T +L+ F+K+G + R+ +R +GF+++ ++A I Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465 Query: 374 RACDETEWNGRIILVEKSK 318 TE +GR+I VEK+K Sbjct: 466 SHLHRTELHGRMISVEKAK 484
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 53.9 bits (128), Expect = 4e-07 Identities = 24/76 (31%), Positives = 46/76 (60%) Frame = -3 Query: 542 FVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACD 363 FV G ++AT + +L++ F++FG D+ +G SRGFGF++ + ++ AI + Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 362 ETEWNGRIILVEKSKA 315 E +GR+I V ++++ Sbjct: 69 GKELDGRVITVNEAQS 84
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 53.5 bits (127), Expect = 6e-07 Identities = 28/87 (32%), Positives = 44/87 (50%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P N G + LFVA +Y TTE +L ++F +G KR+G RG+ F+ Sbjct: 91 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 150 Query: 407 LEKDEDADAAIRACDETEWNGRIILVE 327 E + D +A + D + +GR +LV+ Sbjct: 151 YEHERDMHSAYKHADGKKIDGRRVLVD 177
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 53.5 bits (127), Expect = 6e-07 Identities = 28/87 (32%), Positives = 44/87 (50%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P N G + LFVA +Y TTE +L ++F +G KR+G RG+ F+ Sbjct: 91 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIE 150 Query: 407 LEKDEDADAAIRACDETEWNGRIILVE 327 E + D +A + D + +GR +LV+ Sbjct: 151 YEHERDMHSAYKHADGKKIDGRRVLVD 177
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 53.5 bits (127), Expect = 6e-07 Identities = 26/76 (34%), Positives = 44/76 (57%) Frame = -3 Query: 542 FVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACD 363 FV G ++AT +R LE FA++G D+ TG SRGFGF++ + ++ AI + Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 362 ETEWNGRIILVEKSKA 315 + +GR I V ++++ Sbjct: 71 GQDLDGRSITVNEAQS 86
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/90 (32%), Positives = 44/90 (48%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P +P + LFV G S TTE L++ F D+ TG S+GFGF+ Sbjct: 562 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVD 618 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSK 318 +EDA AA A ++ E +G + ++ +K Sbjct: 619 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/75 (29%), Positives = 36/75 (48%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + L ++ SY+ TE L++ F K G S+G+ F+ EDA A+ Sbjct: 488 KTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALN 543 Query: 371 ACDETEWNGRIILVE 327 +C++ E GR I +E Sbjct: 544 SCNKMEIEGRTIRLE 558
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 53.1 bits (126), Expect = 7e-07 Identities = 27/89 (30%), Positives = 48/89 (53%) Frame = -3 Query: 584 ANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSL 405 + + G GRN +V+G S T +L+ F+K+G + R+ +R +GF+++ Sbjct: 395 SKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTM 454 Query: 404 EKDEDADAAIRACDETEWNGRIILVEKSK 318 E+A I +TE +G++I VEK+K Sbjct: 455 STAEEATKCINHLHKTELHGKMISVEKAK 483
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = -3 Query: 542 FVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACD 363 FV G ++AT +R LE F+++G D+ TG SRGFGF++ + ++ AI + Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 362 ETEWNGRIILVEKSKA 315 + +GR I V ++++ Sbjct: 71 GQDLDGRSITVNEAQS 86
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/90 (32%), Positives = 44/90 (48%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P +P + LFV G S TTE L++ F D+ TG S+GFGF+ Sbjct: 559 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVD 615 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSK 318 +EDA AA A ++ E +G + ++ +K Sbjct: 616 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 645 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + L ++ SY+ TE L++ F K + G S+G+ F+ EDA A+ Sbjct: 485 KTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALN 540 Query: 371 ACDETEWNGRIILVE 327 +C++ E GR I +E Sbjct: 541 SCNKMEIEGRTIRLE 555
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/85 (32%), Positives = 45/85 (52%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 +PG+ LF+ G + T E+ LE F K+G +D+ T SRGF F++ E DA Sbjct: 6 RPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64 Query: 380 AIRACDETEWNGRIILVEKSKAPAW 306 R + +G+ I VE++ P++ Sbjct: 65 VARDMNGKSLDGKAIKVEQATKPSF 89
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/90 (32%), Positives = 44/90 (48%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P +P + LFV G S TTE L++ F D+ TG S+GFGF+ Sbjct: 560 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESF---DGSVRARIVTDRETGSSKGFGFVD 616 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSK 318 +EDA AA A ++ E +G + ++ +K Sbjct: 617 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646 Score = 42.0 bits (97), Expect = 0.002 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + L ++ SY+ TE L++ F K + G S+G+ F+ EDA A+ Sbjct: 486 KTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 541 Query: 371 ACDETEWNGRIILVE 327 +C++ E GR I +E Sbjct: 542 SCNKREIEGRAIRLE 556
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/90 (32%), Positives = 44/90 (48%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P +P + LFV G S TTE L++ F D+ TG S+GFGF+ Sbjct: 559 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESF---DGSVRARIVTDRETGSSKGFGFVD 615 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSK 318 +EDA AA A ++ E +G + ++ +K Sbjct: 616 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 645 Score = 42.0 bits (97), Expect = 0.002 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + L ++ SY+ TE L++ F K + G S+G+ F+ EDA A+ Sbjct: 485 KTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 540 Query: 371 ACDETEWNGRIILVE 327 +C++ E GR I +E Sbjct: 541 SCNKREIEGRAIRLE 555
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 53.1 bits (126), Expect = 7e-07 Identities = 27/76 (35%), Positives = 41/76 (53%) Frame = -3 Query: 542 FVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACD 363 FV G ++AT LE+ FA FG D+ TG SRGFGF++ ++ AI + Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 362 ETEWNGRIILVEKSKA 315 E +GR I V ++++ Sbjct: 71 GKELDGRNITVNQAQS 86
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/90 (32%), Positives = 44/90 (48%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P +P + LFV G S TTE L++ F D+ TG S+GFGF+ Sbjct: 561 PRGSPNARSQPSKTLFVKGLSEDTTEETLKESF---DGSVRARIVTDRETGSSKGFGFVD 617 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSK 318 +EDA AA A ++ E +G + ++ +K Sbjct: 618 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647 Score = 42.0 bits (97), Expect = 0.002 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + L ++ SY+ TE L++ F K + G S+G+ F+ EDA A+ Sbjct: 487 KTLVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 542 Query: 371 ACDETEWNGRIILVE 327 +C++ E GR I +E Sbjct: 543 SCNKREIEGRAIRLE 557
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 52.8 bits (125), Expect = 9e-07 Identities = 27/79 (34%), Positives = 45/79 (56%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 GRNL+V+G S +T +L+ F+K G + R+ +R +GF+++ ++A I Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509 Query: 374 RACDETEWNGRIILVEKSK 318 TE +GR+I VEK+K Sbjct: 510 SHLHRTELHGRMISVEKAK 528
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 52.8 bits (125), Expect = 9e-07 Identities = 28/73 (38%), Positives = 40/73 (54%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G ++ T E+ LE F+ FG +D+ T SRGFGF++ E A A+RA Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 365 DETEWNGRIILVE 327 + +GR I V+ Sbjct: 68 NGESLDGRQIRVD 80
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/90 (28%), Positives = 49/90 (54%) Frame = -3 Query: 584 ANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSL 405 + + G GRN +V+G S T +L+ F+++G + R+ +R +GF+++ Sbjct: 417 SREEKGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTM 476 Query: 404 EKDEDADAAIRACDETEWNGRIILVEKSKA 315 E+A I +TE +G++I VEK+K+ Sbjct: 477 STAEEATKCINHLHKTELHGKMISVEKAKS 506
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/81 (34%), Positives = 43/81 (53%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 +P + LFV G S TTE L++ F D+ TG S+GFGF+ +EDA A Sbjct: 565 QPSKTLFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKA 621 Query: 380 AIRACDETEWNGRIILVEKSK 318 A A ++ E +G + ++ +K Sbjct: 622 AKEAMEDGEIDGNKVTLDWAK 642
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/77 (35%), Positives = 45/77 (58%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+V + TT+ + ++ FAKFG +D G +GFGF++ EK EDA A+ A Sbjct: 219 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEA 277 Query: 368 CDETEWNGRIILVEKSK 318 +++E NG + V +++ Sbjct: 278 LNDSELNGEKLYVGRAQ 294 Score = 38.1 bits (87), Expect = 0.024 Identities = 25/73 (34%), Positives = 37/73 (50%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NLFV + + +LE++FA +G R + G S+GFGF+ E+A AI Sbjct: 320 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAI 378 Query: 374 RACDETEWNGRII 336 TE N +I+ Sbjct: 379 -----TEKNQQIV 386 Score = 37.7 bits (86), Expect = 0.031 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK G G N+F+ + L F+ FG D+ G S+G Sbjct: 112 WSQRDPSLRKKGSG----NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKG 166 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILV 330 FGF+ E++ A AI A + NG+ I V Sbjct: 167 FGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 197
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/77 (35%), Positives = 45/77 (58%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +F+ G S+ TT+++L+ F+KFG D TG SRGFGF+ ++ E D + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 157 Query: 365 DETEWNGRIILVEKSKA 315 E + NG++I +++KA Sbjct: 158 KEHKLNGKVIDPKRAKA 174 Score = 37.4 bits (85), Expect = 0.041 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 +P + +FV G S T E ++ + F FG D +T RGF F++ +++E Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/77 (35%), Positives = 45/77 (58%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +F+ G S+ TT+++L+ F+KFG D TG SRGFGF+ ++ E D + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 157 Query: 365 DETEWNGRIILVEKSKA 315 E + NG++I +++KA Sbjct: 158 KEHKLNGKVIDPKRAKA 174 Score = 37.4 bits (85), Expect = 0.041 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 +P + +FV G S T E ++ + F FG D +T RGF F++ +++E Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 52.0 bits (123), Expect = 2e-06 Identities = 28/73 (38%), Positives = 40/73 (54%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G ++ T E+ LE F+ FG +D+ T SRGFGF++ E A A+RA Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 365 DETEWNGRIILVE 327 + +GR I V+ Sbjct: 68 NGESLDGRQIRVD 80
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/77 (35%), Positives = 45/77 (58%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +F+ G S+ TT+++L+ F+KFG D TG SRGFGF+ ++ E D + Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 155 Query: 365 DETEWNGRIILVEKSKA 315 E + NG++I +++KA Sbjct: 156 KEHKLNGKVIDPKRAKA 172 Score = 37.4 bits (85), Expect = 0.041 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 +P + +FV G S T E ++ + F FG D +T RGF F++ +++E Sbjct: 177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LF+ G ++ T E LE+ F K+G +D+ T SRGFGF++ E +DA A+ A Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 365 DETEWNGRIILVEKS 321 + +GR I V+++ Sbjct: 67 NGKSVDGRQIRVDQA 81
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = -3 Query: 542 FVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACD 363 FV G ++AT+ LE FA +G D+ TG SRGFGF++ + AI + Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 362 ETEWNGRIILVEKSKA 315 E +GR I V ++++ Sbjct: 71 GKELDGRNITVNQAQS 86
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/88 (32%), Positives = 43/88 (48%) Frame = -3 Query: 581 NRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLE 402 N + G + + LFV G S TTE L + F D+ TG S+GFGF+ Sbjct: 543 NARGGFNQQSKTLFVRGLSEDTTEETLRESFE---GSISARIVTDRDTGSSKGFGFVDFS 599 Query: 401 KDEDADAAIRACDETEWNGRIILVEKSK 318 EDA AA A ++ E +G + ++ +K Sbjct: 600 SPEDAKAAKEAMEDGEIDGNKVTLDFAK 627 Score = 33.5 bits (75), Expect = 0.59 Identities = 18/78 (23%), Positives = 35/78 (44%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 + R LFV Y TE E++ F + G S+G ++ + + +A+ Sbjct: 368 RDARTLFVKNLPYRVTEDEMKNVFEN----ALEVRLVLNKEGSSKGMAYIEFKTEAEAEK 423 Query: 380 AIRACDETEWNGRIILVE 327 A+ TE +GR ++++ Sbjct: 424 ALEEKQGTEVDGRAMVID 441
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 49.7 bits (117), Expect = 8e-06 Identities = 26/77 (33%), Positives = 44/77 (57%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F + L++ F++FG RD G S+GFGF+S EK EDA+ A+ Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E +G+II V +++ Sbjct: 251 MNGKEISGKIIFVGRAQ 267 Score = 40.4 bits (93), Expect = 0.005 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL++ + +L K+F+ FG + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 49.7 bits (117), Expect = 8e-06 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LF+ SY +E + F+++G D RTG S+GF ++ K EDA A R+ Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371 Query: 365 DETEWNGRII 336 D+ + GR++ Sbjct: 372 DKQIFQGRLL 381 Score = 30.0 bits (66), Expect = 6.6 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 L V G TE +L + F+K G + KR G+SR F F+ + + A+ A++ Sbjct: 4 LIVKGLPKYYTEEKLREFFSKQGDVTDVKLMK-KRNGESRKFAFIGYKSADAAERAVKYF 62 Query: 365 DETEWNGRIILVEKSK 318 +++ + I VE +K Sbjct: 63 NKSFIDTARIEVEFAK 78
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/88 (28%), Positives = 45/88 (51%) Frame = -3 Query: 584 ANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSL 405 A R + + R++FV Y TE +L+ F++ G D+ TG +G+GF Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64 Query: 404 EKDEDADAAIRACDETEWNGRIILVEKS 321 + E A +A+R + E++GR + V+ + Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVDNA 92
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 49.3 bits (116), Expect = 1e-05 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Frame = -3 Query: 593 SPPANRKTGLGK-----PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDS 429 SP + R+ +G P L V G S TTER+L + F+K+G D+++ S Sbjct: 99 SPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 428 RGFGFLSLEKDEDADAAIRACDETEWNGRIILVEKS 321 RGF F+ E +DA A + E +GR I V+ S Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 49.3 bits (116), Expect = 1e-05 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Frame = -3 Query: 593 SPPANRKTGLGK-----PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDS 429 SP + R+ +G P L V G S TTER+L + F+K+G D+++ S Sbjct: 99 SPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 428 RGFGFLSLEKDEDADAAIRACDETEWNGRIILVEKS 321 RGF F+ E +DA A + E +GR I V+ S Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 49.3 bits (116), Expect = 1e-05 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Frame = -3 Query: 593 SPPANRKTGLGK-----PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDS 429 SP + R+ +G P L V G S TTER+L + F+K+G D+++ S Sbjct: 99 SPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 158 Query: 428 RGFGFLSLEKDEDADAAIRACDETEWNGRIILVEKS 321 RGF F+ E +DA A + E +GR I V+ S Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/88 (28%), Positives = 45/88 (51%) Frame = -3 Query: 584 ANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSL 405 A R + + R++FV Y TE +L+ F++ G D+ TG +G+GF Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64 Query: 404 EKDEDADAAIRACDETEWNGRIILVEKS 321 + E A +A+R + E++GR + V+ + Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVDNA 92
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P N G P + LFV+ +Y ++E +++++F +G D+ T +G+ F+ Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSK---APAW*ILHPRAL 282 D AA + D + +GR +LV+ + P W PR L Sbjct: 186 YMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNW---RPRRL 227
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 48.9 bits (115), Expect = 1e-05 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +FV G Y TT+ L K F FG D++TG SRG+GF+++ D AA RAC Sbjct: 34 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTM---ADRAAADRAC 90 Query: 365 DETE--WNGRIILVEKSKAPAW*ILHPRALQAMLWVGGRVC--TAFYRTNSIT*TINYHY 198 + +GR V + A PR+LQ VG + T RT +T HY Sbjct: 91 KDPNPIIDGRKANVNLAYLGA----KPRSLQTGFAVGVQQLHPTLIQRTYGLT----PHY 142 Query: 197 MW-QSLLEPAL 168 ++ ++++P++ Sbjct: 143 IYPPAIVQPSV 153
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/77 (32%), Positives = 42/77 (54%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F + L++ F KFG D+ +G S+GFGF+S E+ EDA A+ Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E NG+ I V +++ Sbjct: 251 MNGKELNGKQIYVGRAQ 267 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F+ FG + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 37.7 bits (86), Expect = 0.031 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK+G+G N+F+ + + L F+ FG D+ S+G Sbjct: 86 WSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI + N R + V + K+ Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/77 (32%), Positives = 42/77 (54%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F + L++ F KFG D+ +G S+GFGF+S E+ EDA A+ Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E NG+ I V +++ Sbjct: 251 MNGKELNGKQIYVGRAQ 267 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F+ FG + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 37.7 bits (86), Expect = 0.031 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK+G+G N+F+ + + L F+ FG D+ S+G Sbjct: 86 WSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI + N R + V + K+ Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 48.5 bits (114), Expect = 2e-05 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 L++ G S T E L+ F+ F +K TG SRG+GF++ ++ A++AI A Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92 Query: 365 DETEWNGRIILVEKSK 318 + E NG I V +K Sbjct: 93 NGQELNGFNISVNVAK 108
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/78 (35%), Positives = 38/78 (48%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R ++V G + TER L F FG D + RGF F+ E+ EDA AAI Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65 Query: 371 ACDETEWNGRIILVEKSK 318 +++E GR I V +K Sbjct: 66 NMNDSELCGRTIRVNLAK 83
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 48.5 bits (114), Expect = 2e-05 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +FV G Y TT+ L K F FG D++TG SRG+GF+++ D AA RAC Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTM---ADRAAAERAC 69 Query: 365 DETE--WNGRIILVEKSKAPAW*ILHPRALQAMLWVGGRVC--TAFYRTNSIT*TINYHY 198 + +GR V + A PR+LQ +G + T RT +T HY Sbjct: 70 KDPNPIIDGRKANVNLAYLGA----KPRSLQTGFAIGVQQLHPTLIQRTYGLT----PHY 121 Query: 197 MW-QSLLEPAL 168 ++ ++++P++ Sbjct: 122 IYPPAIVQPSV 132
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 48.5 bits (114), Expect = 2e-05 Identities = 29/84 (34%), Positives = 45/84 (53%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 PG+ LF+ G + T E+ L+ F K G +D RT SRGF F++ E DA A Sbjct: 7 PGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNA 64 Query: 377 IRACDETEWNGRIILVEKSKAPAW 306 + + +G+ I VE++K P++ Sbjct: 65 AKDMNGKSLHGKAIKVEQAKKPSF 88
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/77 (36%), Positives = 42/77 (54%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +FV G S+ T++++L+ F KFG D TG SRGFGF+ L KD + + Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI-LFKDSSSVEKVLDQ 135 Query: 365 DETEWNGRIILVEKSKA 315 E +GR+I +K+ A Sbjct: 136 KEHRLDGRVIDPKKAMA 152 Score = 33.9 bits (76), Expect = 0.45 Identities = 14/55 (25%), Positives = 28/55 (50%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 P + +FV G + TE ++ + F +FG D + RGF F++ ++++ Sbjct: 157 PVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEED 211
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/77 (32%), Positives = 41/77 (53%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F + L+ F KFG D+ +G S+GFGF+S E+ EDA A+ Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E NG+ I V +++ Sbjct: 251 MNGKELNGKQIYVGRAQ 267 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F+ FG + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 37.7 bits (86), Expect = 0.031 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK+G+G N+F+ + + L F+ FG D+ S+G Sbjct: 86 WSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI + N R + V + K+ Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/77 (32%), Positives = 41/77 (53%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F + L+ F KFG D+ +G S+GFGF+S E+ EDA A+ Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E NG+ I V +++ Sbjct: 251 MNGKELNGKQIYVGRAQ 267 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F+ FG + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 37.7 bits (86), Expect = 0.031 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK+G+G N+F+ + + L F+ FG D+ S+G Sbjct: 86 WSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI + N R + V + K+ Sbjct: 140 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/77 (29%), Positives = 41/77 (53%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R++FV Y TE +L+ F++ G D+ TG +G+GF + E A +A+R Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 371 ACDETEWNGRIILVEKS 321 + E++GR + V+ + Sbjct: 76 NLNGREFSGRALRVDNA 92
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/77 (32%), Positives = 41/77 (53%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F + L+ F KFG D+ +G S+GFGF+S E+ EDA A+ Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E NG+ I V +++ Sbjct: 251 MNGKELNGKQIYVGRAQ 267 Score = 38.5 bits (88), Expect = 0.018 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK+G+G N+FV + + L + FG D+ S+G Sbjct: 86 WSQRDPSLRKSGVG----NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDEN--GSKG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI+ + NGR + V + K+ Sbjct: 140 YGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175 Score = 38.1 bits (87), Expect = 0.024 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+V + L K F+ FG + G S+GFGF+ E+A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV-- 350 Query: 368 CDETEWNGRII 336 TE NGRI+ Sbjct: 351 ---TEMNGRIV 358
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/77 (29%), Positives = 41/77 (53%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R++FV Y TE +L+ F++ G D+ TG +G+GF + E A +A+R Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 371 ACDETEWNGRIILVEKS 321 + E++GR + V+ + Sbjct: 76 NLNGREFSGRALRVDNA 92
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/77 (29%), Positives = 41/77 (53%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R++FV Y TE +L+ F++ G D+ TG +G+GF + E A +A+R Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 371 ACDETEWNGRIILVEKS 321 + E++GR + V+ + Sbjct: 76 NLNGREFSGRALRVDNA 92
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/77 (29%), Positives = 41/77 (53%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R++FV Y TE +L+ F++ G D+ TG +G+GF + E A +A+R Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 371 ACDETEWNGRIILVEKS 321 + E++GR + V+ + Sbjct: 76 NLNGREFSGRALRVDNA 92
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+V+G T++ELE+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185 Query: 368 CDETEWNG 345 + + +G Sbjct: 186 LNGQKPSG 193 Score = 33.9 bits (76), Expect = 0.45 Identities = 22/77 (28%), Positives = 32/77 (41%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL V T+ E F G RDK TG S G+GF++ +DA+ AI Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 368 CDETEWNGRIILVEKSK 318 + + I V ++ Sbjct: 100 LNGLRLQTKTIKVSYAR 116 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Frame = -3 Query: 569 GLGKPGRN-----LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSL 405 G+ PG +FV S + E L + F FG RD T +GFGF+++ Sbjct: 279 GMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTM 338 Query: 404 EKDEDADAAIRACDETEWNGRIILV 330 ++A AI + + R++ V Sbjct: 339 TNYDEAAMAIASLNGYRLGDRVLQV 363
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L F ++G RD T SRGFGF++ E+ DAA+ Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Query: 371 A 369 A Sbjct: 73 A 73 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/77 (24%), Positives = 33/77 (42%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S +++ G + +FV G T E L F ++G D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 146 GFAFVTFDDHDSVDKIV 162
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/61 (40%), Positives = 35/61 (57%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L + F K+G RD +T SRGFGF++ E+ DAA+ Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94 Query: 371 A 369 A Sbjct: 95 A 95 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/77 (27%), Positives = 33/77 (42%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S + K G + +FV G T E L F K+G D+++G R Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 168 GFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/61 (40%), Positives = 35/61 (57%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L + F K+G RD +T SRGFGF++ E+ DAA+ Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94 Query: 371 A 369 A Sbjct: 95 A 95 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/77 (27%), Positives = 33/77 (42%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S + K G + +FV G T E L F K+G D+++G R Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 168 GFAFVTFDDHDTVDKIV 184
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L F ++G RD T SRGFGF++ E+ DAA+ Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Query: 371 A 369 A Sbjct: 73 A 73 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/77 (24%), Positives = 33/77 (42%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S +++ G + +FV G T E L F ++G D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 146 GFAFVTFDDHDSVDKIV 162
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+V+G T++ELE+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192 Query: 368 CDETEWNG 345 + + +G Sbjct: 193 LNGQKPSG 200 Score = 33.9 bits (76), Expect = 0.45 Identities = 22/77 (28%), Positives = 32/77 (41%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL V T+ E F G RDK TG S G+GF++ +DA+ AI Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106 Query: 368 CDETEWNGRIILVEKSK 318 + + I V ++ Sbjct: 107 LNGLRLQTKTIKVSYAR 123 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Frame = -3 Query: 569 GLGKPGRN-----LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSL 405 G+ PG +FV S + E L + F FG RD T +GFGF+++ Sbjct: 286 GMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTM 345 Query: 404 EKDEDADAAIRACDETEWNGRIILV 330 ++A AI + + R++ V Sbjct: 346 TNYDEAAMAIASLNGYRLGDRVLQV 370
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+V+G T++ELE+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197 Query: 368 CDETEWNG 345 + + +G Sbjct: 198 LNGQKPSG 205 Score = 33.9 bits (76), Expect = 0.45 Identities = 22/77 (28%), Positives = 32/77 (41%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL V T+ E F G RDK TG S G+GF++ +DA+ AI Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111 Query: 368 CDETEWNGRIILVEKSK 318 + + I V ++ Sbjct: 112 LNGLRLQTKTIKVSYAR 128 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Frame = -3 Query: 569 GLGKPGRN-----LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSL 405 G+ PG +FV S + E L + F FG RD T +GFGF+++ Sbjct: 291 GMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTM 350 Query: 404 EKDEDADAAIRACDETEWNGRIILV 330 ++A AI + + R++ V Sbjct: 351 TNYDEAAMAIASLNGYRLGDRVLQV 375
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L F ++G RD T SRGFGF++ E+ DAA+ Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Query: 371 A 369 A Sbjct: 73 A 73 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/77 (24%), Positives = 33/77 (42%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S +++ G + +FV G T E L F ++G D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 146 GFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L F ++G RD T SRGFGF++ E+ DAA+ Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Query: 371 A 369 A Sbjct: 73 A 73 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/77 (24%), Positives = 33/77 (42%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S +++ G + +FV G T E L F ++G D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 146 GFAFVTFDDHDSVDKIV 162
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/61 (40%), Positives = 35/61 (57%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L + F K+G RD +T SRGFGF++ E+ DAA+ Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94 Query: 371 A 369 A Sbjct: 95 A 95 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/77 (27%), Positives = 33/77 (42%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S + K G + +FV G T E L F K+G D+++G R Sbjct: 108 KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 168 GFAFVTFDDHDTVDKIV 184
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/80 (27%), Positives = 43/80 (53%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G ++V S+ + LE F++ G D+ +G S+GFGF++ + ++ AI Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262 Query: 374 RACDETEWNGRIILVEKSKA 315 ++ D + +GR I V +++A Sbjct: 263 KSLDGADLDGRQIRVSEAEA 282 Score = 40.4 bits (93), Expect = 0.005 Identities = 23/78 (29%), Positives = 35/78 (44%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV + +L + F G DK TG SRGFGF+++ + +AA + Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 365 DETEWNGRIILVEKSKAP 312 + E +GR + V P Sbjct: 153 NGYELDGRPLRVNAGPPP 170
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 NL+V+G T++ELE+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Score = 34.3 bits (77), Expect = 0.35 Identities = 20/66 (30%), Positives = 31/66 (46%) Frame = -3 Query: 515 TERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACDETEWNGRII 336 T+ EL+ F G RDK TG S G+GF++ +DA+ AI + + I Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110 Query: 335 LVEKSK 318 V ++ Sbjct: 111 KVSYAR 116 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = -3 Query: 563 GKPGRN--LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G PG +FV + E L + F FG RD T +GFGF+++ ++ Sbjct: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329 Query: 389 ADAAIRACDETEWNGRIILV 330 A AI + + R++ V Sbjct: 330 AAMAIASLNGYRLGDRVLQV 349
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 NL+V+G T++ELE+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Score = 36.6 bits (83), Expect = 0.070 Identities = 28/94 (29%), Positives = 40/94 (42%) Frame = -3 Query: 599 CWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGF 420 C SP + T K NL V T+ EL+ F G RDK TG S G+ Sbjct: 25 CSSPVDSGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 419 GFLSLEKDEDADAAIRACDETEWNGRIILVEKSK 318 GF++ +DA+ AI + + I V ++ Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = -3 Query: 563 GKPGRN--LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G PG +FV + E L + F FG RD T +GFGF+++ ++ Sbjct: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329 Query: 389 ADAAIRACDETEWNGRIILV 330 A AI + + R++ V Sbjct: 330 AAMAIASLNGYRLGDRVLQV 349
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 NL+V+G T++ELE+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Score = 36.6 bits (83), Expect = 0.070 Identities = 28/94 (29%), Positives = 40/94 (42%) Frame = -3 Query: 599 CWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGF 420 C SP + T K NL V T+ EL+ F G RDK TG S G+ Sbjct: 25 CSSPVDSGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 419 GFLSLEKDEDADAAIRACDETEWNGRIILVEKSK 318 GF++ +DA+ AI + + I V ++ Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = -3 Query: 563 GKPGRN--LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G PG +FV + E L + F FG RD T +GFGF+++ ++ Sbjct: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 329 Query: 389 ADAAIRACDETEWNGRIILV 330 A AI + + R++ V Sbjct: 330 AAMAIASLNGYRLGDRVLQV 349
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 47.0 bits (110), Expect = 5e-05 Identities = 28/77 (36%), Positives = 42/77 (54%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +FV G S+ T++++L+ F KFG D TG SRGFGF+ L KD + + Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFI-LFKDAASVEKVLDQ 128 Query: 365 DETEWNGRIILVEKSKA 315 E +GR+I +K+ A Sbjct: 129 KEHRLDGRVIDPKKAMA 145 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -3 Query: 557 PGRNLFVAGFS-YATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 P + +FV G + + TE ++ + F +FG D + RGF F++ +++E Sbjct: 150 PVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEE 205
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 47.0 bits (110), Expect = 5e-05 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K GR LF+ Y++TE + +K F+ +G D RTG+S+GF ++ K E+A Sbjct: 323 KTGR-LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQ 381 Query: 380 AIRACDETEWNGRII 336 A D+ + GR++ Sbjct: 382 AYIELDKQIFQGRLL 396
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 NL+V+G T++ELE+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184 Score = 36.6 bits (83), Expect = 0.070 Identities = 28/94 (29%), Positives = 40/94 (42%) Frame = -3 Query: 599 CWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGF 420 C SP + T K NL V T+ EL+ F G RDK TG S G+ Sbjct: 25 CSSPVDSGNTEDSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 419 GFLSLEKDEDADAAIRACDETEWNGRIILVEKSK 318 GF++ +DA+ AI + + I V ++ Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = -3 Query: 563 GKPGRN--LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G PG +FV + E L + F FG RD T +GFGF+++ ++ Sbjct: 271 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE 330 Query: 389 ADAAIRACDETEWNGRIILV 330 A AI + + R++ V Sbjct: 331 AAMAIASLNGYRLGDRVLQV 350
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 46.6 bits (109), Expect = 7e-05 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV ++ L F + G DK TG SRGFGF+++ E+ +AA + Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 365 DETEWNGRIILVEKSKAPA 309 + E +GR I V APA Sbjct: 149 NGYEIDGRAIRVNAGPAPA 167 Score = 38.5 bits (88), Expect = 0.018 Identities = 19/76 (25%), Positives = 40/76 (52%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 ++V S+ + L++ F++ G D+ +G SRGFGF++ ++ + AI + Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268 Query: 365 DETEWNGRIILVEKSK 318 + + +GR I V ++ Sbjct: 269 NGVDLDGRSIRVSAAE 284
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 46.6 bits (109), Expect = 7e-05 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDK---RTGDSRGFG 417 P N + G + LFVA +Y TTE +L ++F +G +K +G RG+ Sbjct: 91 PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYA 150 Query: 416 FLSLEKDEDADAAIRACDETEWNGRIILVE 327 F+ E + D +A + D + +GR +LV+ Sbjct: 151 FIEYEHERDMHSAYKHADGKKIDGRRVLVD 180
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 46.6 bits (109), Expect = 7e-05 Identities = 24/86 (27%), Positives = 40/86 (46%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P G +P ++V + LE+ F++ G D+ TG SRGFGF++ Sbjct: 137 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 196 Query: 407 LEKDEDADAAIRACDETEWNGRIILV 330 + + + + AI A D +GR + V Sbjct: 197 MSSESEVNDAIAALDGQTLDGRAVRV 222 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV Y +L F G ++ T SRGFGF+++ E+A+ A+ Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELL 116 Query: 365 DETEWNGRIILVEKS 321 + + +GR + V K+ Sbjct: 117 NGYDMDGRQLTVNKA 131
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 46.2 bits (108), Expect = 9e-05 Identities = 23/80 (28%), Positives = 41/80 (51%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G L+V S+ + LE F + G D+ +G S+GFGF++L ++ AI Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315 Query: 374 RACDETEWNGRIILVEKSKA 315 + + + +GR I V +++A Sbjct: 316 NSLNGADLDGRQIRVSEAEA 335 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/82 (30%), Positives = 37/82 (45%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 P LFV S+ +L + F G DK TG SRGFGF+++ + +AA Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156 Query: 377 IRACDETEWNGRIILVEKSKAP 312 + + E+ GR + V P Sbjct: 157 AQQFNGYEFEGRPLRVNAGPPP 178
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 46.2 bits (108), Expect = 9e-05 Identities = 24/61 (39%), Positives = 32/61 (52%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L F ++G RD T SRGFGF++ E DAA+ Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 72 Query: 371 A 369 A Sbjct: 73 A 73 Score = 36.6 bits (83), Expect = 0.070 Identities = 19/77 (24%), Positives = 32/77 (41%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S +++ G + +FV G T E L F ++G D+ +G R Sbjct: 86 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKR 145 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + D + Sbjct: 146 GFAFVTFDDHNSVDKIV 162
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 46.2 bits (108), Expect = 9e-05 Identities = 25/81 (30%), Positives = 40/81 (49%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G L+V ++ T +L + FA+ G D+ T SRGF F+++ E+A AI Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172 Query: 374 RACDETEWNGRIILVEKSKAP 312 R D ++ GR + V + P Sbjct: 173 RLFDGSQVGGRTVKVNFPEVP 193 Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 L+VA S+A T + L FA D+ +G SRGFGF++ E ++A+ Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278 Query: 365 DETEWNGRIIL--VEKSKAP 312 +E E GR + V KAP Sbjct: 279 NEVELEGRPLRLNVAGQKAP 298
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 46.2 bits (108), Expect = 9e-05 Identities = 24/82 (29%), Positives = 38/82 (46%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 P +FV ++ L + F + G DK TG SRGFGF+++ E+ +AA Sbjct: 85 PDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144 Query: 377 IRACDETEWNGRIILVEKSKAP 312 + + E +GR + V P Sbjct: 145 CQQFNGYELDGRALRVNSGPPP 166 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/89 (28%), Positives = 43/89 (48%) Frame = -3 Query: 581 NRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLE 402 +R G ++V ++ + LE F++ G D+ +G SRGFGF++ Sbjct: 178 SRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYS 237 Query: 401 KDEDADAAIRACDETEWNGRIILVEKSKA 315 E+ + AI + D + NGR I V ++A Sbjct: 238 SAEEVNNAIESLDGVDLNGRAIRVSPAEA 266
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 46.2 bits (108), Expect = 9e-05 Identities = 35/134 (26%), Positives = 58/134 (43%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + LF+ +Y+ E +L+ F FG DK+T + +GF ++ +DA A Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYL 382 Query: 371 ACDETEWNGRIILVEKSKAPAW*ILHPRALQAMLWVGGRVCTAFYRTNSIT*TINYHYMW 192 D + GR++ V +KA + +L AL + R S T + N YM Sbjct: 383 ELDAKPFQGRLLHVLPAKARSSILLDDYALSKLPLKKQRELKRKNTAASSTFSWNSLYMN 442 Query: 191 QSLLEPALYALLGV 150 + +L + LGV Sbjct: 443 ADAVVTSLASRLGV 456
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 46.2 bits (108), Expect = 9e-05 Identities = 24/84 (28%), Positives = 43/84 (51%) Frame = -3 Query: 593 SPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 +P + + G P R +FV G + T E +L K F+++G D R G S+G+GF Sbjct: 20 NPTSGPRYGTVIPNR-IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVND-RAGVSKGYGF 77 Query: 413 LSLEKDEDADAAIRACDETEWNGR 342 ++ E EDA ++ ++ + + Sbjct: 78 ITFETQEDAQKILQEAEKLNYKDK 101
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F + L++ F ++G D G SRGFGF+S E+ EDA A+ Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDD 250 Query: 368 CDETEWNGRIILVEKSK 318 + + NG+ I V +++ Sbjct: 251 MNGKDLNGKAIFVGRAQ 267 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/73 (32%), Positives = 33/73 (45%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F FG + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 37.0 bits (84), Expect = 0.054 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK+G+G N+F+ + + L F+ FG D+ S+G Sbjct: 86 WSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI + N R + V + K+ Sbjct: 140 YGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 45.8 bits (107), Expect = 1e-04 Identities = 21/75 (28%), Positives = 38/75 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV +Y + L F + G ++ T SRGFGF+++ ++A+ A+ Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211 Query: 365 DETEWNGRIILVEKS 321 + + NGR++ V K+ Sbjct: 212 NRYDLNGRLLTVNKA 226 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 +P ++V + LE+ F++ G D+ TG SRGFGF+++ ++ + Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300 Query: 380 AIRACDETEWNGRIILV 330 AI A D GR I V Sbjct: 301 AISALDGQNLEGRAIRV 317
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Frame = -3 Query: 560 KPGRN-LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 KP N LFV + TT+ +LE F++FG RD +TG+S + F+ EK+ED + Sbjct: 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCE 295 Query: 383 AAIRACDETEWNGRIILVEKSKAPA 309 A D + R I V+ S++ A Sbjct: 296 KAFFKMDNVLIDDRRIHVDFSQSVA 320
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Frame = -3 Query: 560 KPGRN-LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 KP N LFV + TT+ +LE F++FG RD +TG+S + F+ EK+ED + Sbjct: 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCE 295 Query: 383 AAIRACDETEWNGRIILVEKSKAPA 309 A D + R I V+ S++ A Sbjct: 296 KAFFKMDNVLIDDRRIHVDFSQSVA 320
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 45.8 bits (107), Expect = 1e-04 Identities = 29/90 (32%), Positives = 42/90 (46%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P G + LFV G S TTE L++ F D+ TG S+GFGF+ Sbjct: 490 PQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAF---DGSVNARIVTDRDTGASKGFGFVD 546 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSK 318 EDA AA A ++ E +G + ++ +K Sbjct: 547 FSTAEDAKAAKEAMEDGEIDGNKVTLDFAK 576 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/92 (30%), Positives = 41/92 (44%) Frame = -3 Query: 593 SPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 S + K G + L V SY+ TE L + F K + G ++GF F Sbjct: 400 SQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAF 454 Query: 413 LSLEKDEDADAAIRACDETEWNGRIILVEKSK 318 + EDA A+ +C+ TE GR I +E S+ Sbjct: 455 IEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 486 Score = 33.1 bits (74), Expect = 0.78 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 + R LFV Y+TT EL++ F + G ++G ++ +++A+ Sbjct: 321 RDSRTLFVKNIPYSTTVEELQEIFEN----AKDIRIPTGKDGSNKGIAYVEFSNEDEANK 376 Query: 380 AIRACDETEWNGRIILVE 327 A+ E GR I V+ Sbjct: 377 ALEEKQGAEIEGRSIFVD 394
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Frame = -3 Query: 575 KTGLGKPG------RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 K +PG NL+V S + T+ +LE F K+G RDK TG RG F Sbjct: 150 KVSFARPGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAF 209 Query: 413 LSLEKDEDADAAIRA 369 + K E+A AI A Sbjct: 210 IRFNKREEAQEAISA 224 Score = 33.5 bits (75), Expect = 0.59 Identities = 22/66 (33%), Positives = 28/66 (42%) Frame = -3 Query: 572 TGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 +G G NL V +REL F G RD +TG S G+GF+ + Sbjct: 71 SGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEA 130 Query: 392 DADAAI 375 DA AI Sbjct: 131 DALRAI 136
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/89 (28%), Positives = 43/89 (48%) Frame = -3 Query: 581 NRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLE 402 +R G ++V ++ + LE F++ G D+ +G SRGFGF++ Sbjct: 184 SRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYS 243 Query: 401 KDEDADAAIRACDETEWNGRIILVEKSKA 315 E+ + AI + D + NGR I V ++A Sbjct: 244 SAEEVNNAIESLDGVDLNGRAIRVSPAEA 272 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/82 (29%), Positives = 38/82 (46%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 P +FV ++ L + F + G DK TG SRGFGF+++ E+ +AA Sbjct: 85 PDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144 Query: 377 IRACDETEWNGRIILVEKSKAP 312 + + E +GR + V P Sbjct: 145 CQQFNGYELDGRALRVNSGPPP 166
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 45.4 bits (106), Expect = 2e-04 Identities = 23/75 (30%), Positives = 37/75 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV Y L + F + G ++ T SRGFGF+++ E+AD A+ Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELY 158 Query: 365 DETEWNGRIILVEKS 321 + + NGR++ V K+ Sbjct: 159 SQYDLNGRLLTVNKA 173 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/81 (25%), Positives = 39/81 (48%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 +P ++V + + LE+ F++ G D+ +G SRGFGF+++ + + Sbjct: 188 QPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSE 247 Query: 380 AIRACDETEWNGRIILVEKSK 318 AI D +GR I V ++ Sbjct: 248 AIANLDGQTLDGRTIRVNAAE 268
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 45.4 bits (106), Expect = 2e-04 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F + L++ F K+G D G S+GFGF+S E+ EDA A+ Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDE 250 Query: 368 CDETEWNGRIILVEKSK 318 + + NG+ + V +++ Sbjct: 251 MNGKDMNGKSMFVGRAQ 267 Score = 39.3 bits (90), Expect = 0.011 Identities = 24/73 (32%), Positives = 33/73 (45%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F FG + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 37.0 bits (84), Expect = 0.054 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK+G+G N+F+ + + L F+ FG D+ S+G Sbjct: 86 WSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI + N R + V + K+ Sbjct: 140 YGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 45.4 bits (106), Expect = 2e-04 Identities = 25/77 (32%), Positives = 37/77 (48%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV ++ TT L F+ +G + TG+ G FL EDA AA +A Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKAL 282 Query: 365 DETEWNGRIILVEKSKA 315 D+T + GR++ V +A Sbjct: 283 DKTIFQGRLLHVLPGRA 299
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 45.4 bits (106), Expect = 2e-04 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = -3 Query: 539 VAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACDE 360 V S T E +L++ F FG +DK TG S+GF F+S + EDA AI Sbjct: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302 Query: 359 TEWNGRIILVEKSK 318 ++ I+ VE +K Sbjct: 303 FGYDHLILNVEWAK 316
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 45.4 bits (106), Expect = 2e-04 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = -3 Query: 539 VAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACDE 360 V S T E +L++ F FG +DK TG S+GF F+S + EDA AI Sbjct: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302 Query: 359 TEWNGRIILVEKSK 318 ++ I+ VE +K Sbjct: 303 FGYDHLILNVEWAK 316
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 45.4 bits (106), Expect = 2e-04 Identities = 28/91 (30%), Positives = 46/91 (50%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P RK + R LF+ G S+ TTE L + ++G RD + SRGFGF++ Sbjct: 9 PLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 68 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSKA 315 + DAA+ A + +GR++ +++ A Sbjct: 69 FSSMAEVDAAMAARPHS-IDGRVVEPKRAVA 98 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = -3 Query: 563 GKPG-----RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEK 399 GKPG + LFV G T E L F ++G D+++G RGFGF++ + Sbjct: 103 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 162 Query: 398 DEDADAAI 375 + D + Sbjct: 163 HDPVDKIV 170
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 45.4 bits (106), Expect = 2e-04 Identities = 20/59 (33%), Positives = 36/59 (61%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 NL+V+G +++E+E+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184 Score = 36.2 bits (82), Expect = 0.092 Identities = 23/77 (29%), Positives = 33/77 (42%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL V T+ E + F G RDK TG S G+GF++ DAD AI Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 368 CDETEWNGRIILVEKSK 318 + + + I V ++ Sbjct: 100 LNGLKLQTKTIKVSYAR 116 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/80 (27%), Positives = 34/80 (42%) Frame = -3 Query: 569 GLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G G +FV S E L + F FG RD T +GFGF+++ ++ Sbjct: 278 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 337 Query: 389 ADAAIRACDETEWNGRIILV 330 A AI + + R++ V Sbjct: 338 AAMAIASLNGYRLGERVLQV 357
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 45.4 bits (106), Expect = 2e-04 Identities = 27/84 (32%), Positives = 40/84 (47%) Frame = -3 Query: 563 GKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 G+ R L+V EL + G DK +G SR FGF++++ EDA+ Sbjct: 80 GEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDAN 139 Query: 383 AAIRACDETEWNGRIILVEKSKAP 312 A I ++TE GR I V ++ P Sbjct: 140 AVIEKLNDTEIGGRKIKVNITEKP 163 Score = 37.7 bits (86), Expect = 0.031 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +++ + T L+ F++ G R T S GFGF+S +E+ +AAI+A Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245 Query: 365 DETEWNGRIILVEKS 321 + + G+ I V K+ Sbjct: 246 NNSVLEGQKIRVNKA 260
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 45.1 bits (105), Expect = 2e-04 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Frame = -3 Query: 581 NRKTGLGKPG--RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 +R+ G+P R LF+ G Y TT+ L++ F ++G +D +T SRGFGF++ Sbjct: 5 DRENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFIT 64 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSKAPAW*ILHPRALQAM--LWVGG 258 + D A A + +GR++ K P I P A + L+VGG Sbjct: 65 YSRAHMVDDAQNARPH-KVDGRVV-EPKRAVPRTEIGRPEAGATVKKLFVGG 114 Score = 35.8 bits (81), Expect = 0.12 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 575 KTGLGKPG-----RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFL 411 +T +G+P + LFV G E +L F ++G DK T RGF F+ Sbjct: 95 RTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFV 154 Query: 410 SLEKDEDAD 384 + + D Sbjct: 155 EFDDYDPVD 163
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/61 (37%), Positives = 35/61 (57%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L + F ++G RD +T SRGFGF++ E+ DA++ Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86 Query: 371 A 369 A Sbjct: 87 A 87 Score = 35.4 bits (80), Expect = 0.16 Identities = 19/77 (24%), Positives = 32/77 (41%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S + + G + +FV G T E L F +G D+++G R Sbjct: 100 KRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKR 159 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 160 GFAFVTFDDHDTVDKIV 176
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/61 (37%), Positives = 35/61 (57%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L + F ++G RD +T SRGFGF++ E+ DA++ Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86 Query: 371 A 369 A Sbjct: 87 A 87 Score = 33.1 bits (74), Expect = 0.78 Identities = 18/77 (23%), Positives = 31/77 (40%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S + + G + +FV G T E L +G D+++G R Sbjct: 100 KRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKR 159 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 160 GFAFVTFDDHDTVDKIV 176
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/79 (32%), Positives = 38/79 (48%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV ++ L F + G DK +G SRGFGF+++ E+ +AA + Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 365 DETEWNGRIILVEKSKAPA 309 + E +GR I V APA Sbjct: 150 NGYEIDGRAIRVNAGPAPA 168 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/76 (25%), Positives = 40/76 (52%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 ++V S+ + L++ F++ G D+ +G SRGFGF++ ++ + AI + Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269 Query: 365 DETEWNGRIILVEKSK 318 + + +GR I V ++ Sbjct: 270 NGIDLDGRSIRVSAAE 285
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/61 (36%), Positives = 34/61 (55%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TT+ L + F ++G RD + SRGFGF++ ++ DAA+ Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73 Query: 371 A 369 A Sbjct: 74 A 74 Score = 37.7 bits (86), Expect = 0.031 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S + + G + +FV G T E L + F ++G D+ +G R Sbjct: 87 KRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKR 146 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ E + D + Sbjct: 147 GFAFVTFEDHDSVDKIV 163
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 44.7 bits (104), Expect = 3e-04 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Frame = -3 Query: 587 PANRKTGLGKPG----RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGF 420 P N T + G +FV G + T E +L K F+++G D R G S+G+ Sbjct: 17 PLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGY 75 Query: 419 GFLSLEKDEDADAAIRACDETEWNGR 342 GF++ E EDA ++ ++ + + Sbjct: 76 GFVTFETQEDAQKILQEAEKLNYKDK 101
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 44.7 bits (104), Expect = 3e-04 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Frame = -3 Query: 587 PANRKTGLGKPG----RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGF 420 P N T + G +FV G + T E +L K F+++G D R G S+G+ Sbjct: 17 PLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGY 75 Query: 419 GFLSLEKDEDADAAIRACDETEWNGR 342 GF++ E EDA ++ ++ + + Sbjct: 76 GFVTFETQEDAQKILQEAEKLNYKDK 101
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 44.7 bits (104), Expect = 3e-04 Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = -3 Query: 575 KTGLGKPG------RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 K +PG NL+V T+ ELEK F K+G RDK TG RG F Sbjct: 157 KVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAF 216 Query: 413 LSLEKDEDADAAIRA 369 + K E+A AI A Sbjct: 217 VRFNKREEAQEAISA 231 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = -3 Query: 563 GKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 G G NL V T+REL F G +D +TG S G+ F+ + DA Sbjct: 81 GCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQ 140 Query: 383 AAIRA 369 AI++ Sbjct: 141 NAIKS 145
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 44.7 bits (104), Expect = 3e-04 Identities = 28/78 (35%), Positives = 36/78 (46%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R L+V G + ++ L F FG D T RGF F+ E EDA AAI Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 371 ACDETEWNGRIILVEKSK 318 +E+E GR I V +K Sbjct: 66 NMNESELFGRTIRVNLAK 83
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 44.7 bits (104), Expect = 3e-04 Identities = 28/78 (35%), Positives = 36/78 (46%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R L+V G + ++ L F FG D T RGF F+ E EDA AAI Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 371 ACDETEWNGRIILVEKSK 318 +E+E GR I V +K Sbjct: 66 NMNESELFGRTIRVNLAK 83
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/59 (33%), Positives = 36/59 (61%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 NL+V+G +++E+E+ F+++G D+ TG SRG GF+ +K +A+ AI+ Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184 Score = 36.2 bits (82), Expect = 0.092 Identities = 23/77 (29%), Positives = 33/77 (42%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL V T+ E + F G RDK TG S G+GF++ DAD AI Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 368 CDETEWNGRIILVEKSK 318 + + + I V ++ Sbjct: 100 LNGLKLQTKTIKVSYAR 116 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/80 (27%), Positives = 34/80 (42%) Frame = -3 Query: 569 GLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G G +FV S E L + F FG RD T +GFGF+++ ++ Sbjct: 278 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 337 Query: 389 ADAAIRACDETEWNGRIILV 330 A AI + + R++ V Sbjct: 338 AAMAIASLNGYRLGERVLQV 357
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/68 (32%), Positives = 37/68 (54%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+++G T++++E F++FG D+ TG SRG F+ +K +A+ AI Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI-- 164 Query: 368 CDETEWNG 345 T +NG Sbjct: 165 ---TSFNG 169 Score = 34.7 bits (78), Expect = 0.27 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = -3 Query: 563 GKPGR-NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDA 387 G GR NL V T+ EL F+ G RDK G S G+GF++ +DA Sbjct: 15 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74 Query: 386 DAAIRACDETEWNGRIILVEKSK 318 + AI + + I V ++ Sbjct: 75 ERAINTLNGLRLQSKTIKVSYAR 97 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/80 (26%), Positives = 33/80 (41%) Frame = -3 Query: 569 GLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G G +F+ E L + F FG RD T +GFGF+++ E+ Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297 Query: 389 ADAAIRACDETEWNGRIILV 330 A AI + + +I+ V Sbjct: 298 AAMAIASLNGYRLGDKILQV 317
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 44.3 bits (103), Expect = 3e-04 Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = -3 Query: 575 KTGLGKPG------RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 K +PG NL+V T+ ELEK F K+G RDK TG RG F Sbjct: 174 KVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAF 233 Query: 413 LSLEKDEDADAAIRA 369 + K E+A AI A Sbjct: 234 VRFNKREEAQEAISA 248 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL V T+REL F G +D +TG S G+ F+ + DA AI Sbjct: 101 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 160 Query: 374 R 372 + Sbjct: 161 K 161
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/77 (31%), Positives = 40/77 (51%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F ++ L + F+ FG D TG SRGFGF++ E+A A+ Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E NGR+I V +++ Sbjct: 251 MNGKEVNGRMIYVGRAQ 267 Score = 38.9 bits (89), Expect = 0.014 Identities = 23/73 (31%), Positives = 34/73 (46%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F+ +G + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 37.4 bits (85), Expect = 0.041 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P RK+G+G N+F+ + + L F+ FG D+ SRG Sbjct: 86 WSQRDPGLRKSGVG----NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI+ + N R + V K+ Sbjct: 140 YGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175 Score = 33.9 bits (76), Expect = 0.45 Identities = 23/81 (28%), Positives = 37/81 (45%) Frame = -3 Query: 572 TGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 TG G P +L+V TE L +KF+ G RD T S G+ +++ ++ Sbjct: 4 TGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPA 63 Query: 392 DADAAIRACDETEWNGRIILV 330 DA+ A+ + GR I + Sbjct: 64 DAERALDTMNFEVIKGRPIRI 84
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/58 (37%), Positives = 29/58 (50%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 R LF+ G Y TT+ L+ F K+G +D RT SRGFGF++ D A Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA 88 Score = 36.2 bits (82), Expect = 0.092 Identities = 21/81 (25%), Positives = 35/81 (43%) Frame = -3 Query: 563 GKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 G + LFV E+ + F FG DK TG RGF F+ + + D Sbjct: 118 GATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVD 177 Query: 383 AAIRACDETEWNGRIILVEKS 321 + + + NG+++ V+K+ Sbjct: 178 KVVLQ-KQHQLNGKMVDVKKA 197
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 L V S T E EL F +FG +DK TG ++GF F+S D D AI+A Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY---YDRDCAIKAR 260 Query: 365 DETE---WNGRIILVEKSK 318 D + WN I+ E SK Sbjct: 261 DRLDGYGWNNLILRCEFSK 279
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/75 (29%), Positives = 37/75 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV Y L + F + G ++ T SRGFGF+++ E+A+ A+ Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197 Query: 365 DETEWNGRIILVEKS 321 + + NGR++ V K+ Sbjct: 198 NRYDVNGRLLTVNKA 212 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/72 (29%), Positives = 35/72 (48%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 ++V + + LE+ F++ G D+ TG SRGFGF+++ + + AI Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291 Query: 365 DETEWNGRIILV 330 D +GR I V Sbjct: 292 DGQSLDGRTIRV 303
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/76 (31%), Positives = 36/76 (47%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR S + + G + LFV G E +L + F++FG DK++G R Sbjct: 80 KRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKR 139 Query: 425 GFGFLSLEKDEDADAA 378 GFGF+ + + AD A Sbjct: 140 GFGFVYFQNHDAADKA 155 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 LF+ G + T+E L F FG + +T SR FGF++ E+ADAA+ A Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/79 (32%), Positives = 42/79 (53%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TTE L + ++G RD + SRGFGF++ + DAA+ Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68 Query: 371 ACDETEWNGRIILVEKSKA 315 A T +GR++ +++ A Sbjct: 69 ARPHT-IDGRVVEPKRAVA 86 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/77 (28%), Positives = 34/77 (44%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR + + K G + LFV G T E L + F ++G DK++G R Sbjct: 82 KRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKR 141 Query: 425 GFGFLSLEKDEDADAAI 375 GFGF++ + D + Sbjct: 142 GFGFVTFNDHDPVDKIV 158
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 43.5 bits (101), Expect = 6e-04 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 NL+++G T++++E F++FG D+ TG SRG F+ +K +A+ AI Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Score = 35.0 bits (79), Expect = 0.20 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = -3 Query: 563 GKPGR-NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDA 387 G GR NL V T+ EL F+ G RDK G S G+GF++ +DA Sbjct: 15 GDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74 Query: 386 DAAIRACDETEWNGRIILVEKSK 318 + AI + + I V ++ Sbjct: 75 ERAISTLNGLRLQSKTIKVSYAR 97 Score = 30.0 bits (66), Expect = 6.6 Identities = 20/80 (25%), Positives = 33/80 (41%) Frame = -3 Query: 569 GLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G G +F+ E L + F FG RD T +GFGF+++ E+ Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297 Query: 389 ADAAIRACDETEWNGRIILV 330 + AI + + +I+ V Sbjct: 298 SAMAIASLNGYRLGDKILQV 317
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 43.5 bits (101), Expect = 6e-04 Identities = 25/79 (31%), Positives = 42/79 (53%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TTE L + ++G RD + SRGFGF++ + DAA+ Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68 Query: 371 ACDETEWNGRIILVEKSKA 315 A + +GR++ +++ A Sbjct: 69 ARPHS-IDGRVVEPKRAVA 86 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = -3 Query: 563 GKPG-----RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEK 399 GKPG + LFV G T E L F ++G D+++G RGFGF++ + Sbjct: 91 GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 150 Query: 398 DEDADAAI 375 + D + Sbjct: 151 HDPVDKIV 158
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/79 (34%), Positives = 38/79 (48%) Frame = -3 Query: 566 LGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDA 387 L + GR LFV Y +TE +LEK F+K+G D T +GF F++ E A Sbjct: 398 LAESGR-LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456 Query: 386 DAAIRACDETEWNGRIILV 330 A D + GR++ V Sbjct: 457 VKAYSEVDGQVFQGRMLHV 475 Score = 39.3 bits (90), Expect = 0.011 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGD---SRGFGFLSLEKDEDA 387 PG LF+ ++ TTE +L++ F+K G + K S GFGF+ K E A Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787 Query: 386 DAAIR 372 A++ Sbjct: 788 QKALK 792 Score = 33.5 bits (75), Expect = 0.59 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKR-TGDSRGFGFLSLEKDEDADAAIRA 369 + V + RE+ + F+ FG + TG RGFGF+ +DA A A Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNA 893 Query: 368 -CDETEWNGRIILVE 327 C T GR +++E Sbjct: 894 LCHSTHLYGRRLVLE 908
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/77 (28%), Positives = 41/77 (53%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F ++ L++ F+ FG D +G SRGFGF++ E+A A+ Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E NGR++ V +++ Sbjct: 251 MNGKEVNGRMVYVGRAQ 267 Score = 38.9 bits (89), Expect = 0.014 Identities = 23/73 (31%), Positives = 34/73 (46%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F+ +G + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 36.2 bits (82), Expect = 0.092 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P RK+G+G N+F+ + + L F+ FG D+ SRG Sbjct: 86 WSQRDPGLRKSGVG----NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI+ + N R + V K+ Sbjct: 140 YGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 43.1 bits (100), Expect = 7e-04 Identities = 25/79 (31%), Positives = 41/79 (51%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G S+ TTE L + ++G RD + SRGFGF++ + DAA+ Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68 Query: 371 ACDETEWNGRIILVEKSKA 315 T +GR++ +++ A Sbjct: 69 TRPHT-IDGRVVEPKRAVA 86 Score = 40.8 bits (94), Expect = 0.004 Identities = 21/77 (27%), Positives = 34/77 (44%) Frame = -3 Query: 605 KRCWSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSR 426 KR + + K G + LFV G T E L + F ++G DK++G R Sbjct: 82 KRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKR 141 Query: 425 GFGFLSLEKDEDADAAI 375 GF F++ + + D + Sbjct: 142 GFAFVTFDDHDPVDKIV 158
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 42.7 bits (99), Expect = 0.001 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +F F Y E +LE+ F K+G +R GF F+ +E + DA+ AIRA Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKV--------ERVDMKAGFAFVYMEDERDAEDAIRAL 55 Query: 365 DETEW--NGRIILVEKSK 318 D E+ GR + VE +K Sbjct: 56 DRFEYGRTGRRLRVEWTK 73 Score = 35.4 bits (80), Expect = 0.16 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Frame = -3 Query: 581 NRKTGLG-KPGRNLFVAGFSYATTE-RELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 +R++ G +P + LFV F T R+LE+ F +G R F F+ Sbjct: 85 SRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR--------RNFAFIQ 136 Query: 407 LEKDEDADAAIRACDETEWNGRIILVE 327 E EDA A+ A + ++ ++I VE Sbjct: 137 YEAQEDATRALDATNSSKLMDKVISVE 163
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 42.7 bits (99), Expect = 0.001 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ F ++ L + F+ FG D +G SRGFGF++ E+A A+ Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSE 250 Query: 368 CDETEWNGRIILVEKSK 318 + E NGR+I V +++ Sbjct: 251 MNGKEVNGRMIYVGRAQ 267 Score = 38.1 bits (87), Expect = 0.024 Identities = 23/73 (31%), Positives = 33/73 (45%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L K+F +G + G S+GFGF+ E+A A+ Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 374 RACDETEWNGRII 336 TE NGRI+ Sbjct: 351 -----TEMNGRIV 358 Score = 37.0 bits (84), Expect = 0.054 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P RK+G+G N+F+ + + L F+ FG D+ SRG Sbjct: 86 WSQRDPGLRKSGVG----NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRG 139 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 +GF+ E E A+ AI+ + N R + V K+ Sbjct: 140 YGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/81 (25%), Positives = 36/81 (44%) Frame = -3 Query: 572 TGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 TG G P +L++ TE L +KF+ G RD T S + +++ ++ Sbjct: 4 TGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPA 63 Query: 392 DADAAIRACDETEWNGRIILV 330 DA+ A+ + GR I + Sbjct: 64 DAERALDTMNFEVIKGRPIRI 84
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = -3 Query: 560 KPGRN-LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 KP N LFV + T + +LE F++FG RDKRTGDS + F+ E +D + Sbjct: 244 KPPENVLFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCE 303 Query: 383 AA 378 A Sbjct: 304 QA 305
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/69 (31%), Positives = 31/69 (44%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NLFV + + L F F D +TG SRG+GF+S +DA A+ + Sbjct: 162 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 221 Query: 368 CDETEWNGR 342 + NGR Sbjct: 222 MQGQDLNGR 230
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +F F Y E +LE+ F K+G +R GF F+ +E + DA+ AIRA Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKV--------ERVDMKAGFAFVYMEDERDAEDAIRAL 55 Query: 365 DETEW--NGRIILVEKSKA 315 D E+ GR + VE +K+ Sbjct: 56 DRFEFGRKGRRLRVEWTKS 74 Score = 36.6 bits (83), Expect = 0.070 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Frame = -3 Query: 584 ANRKTGLGKPGRNLFVAGFSYATTE-RELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 + R + +P + LFV F T R+LEK F +G R F F+ Sbjct: 86 SRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIR--------RNFAFIQ 137 Query: 407 LEKDEDADAAIRACDETEWNGRIILVE 327 E EDA A+ A + ++ ++I VE Sbjct: 138 YEAQEDATRALDASNNSKLMDKVISVE 164
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/72 (33%), Positives = 38/72 (52%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 ++V+ + E+EL K FA+FG R+K+TG+SR +GFL EDA A + Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152 Query: 365 DETEWNGRIILV 330 + G ++ V Sbjct: 153 NNYLLMGHLLQV 164
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = -3 Query: 560 KPGRN-LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 KP N LFV + TT+ +LE F++FG RD++TGDS + F+ E + + Sbjct: 249 KPPENVLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCE 308 Query: 383 AAIRACDETEWNGRIILVEKSKA 315 A D + R I V+ S++ Sbjct: 309 EAYSKMDSVLIDDRRIHVDFSQS 331
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/77 (35%), Positives = 40/77 (51%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R + V G + T++ ++ + F K+G D +T SRGF F+ EK DA AA Sbjct: 97 RCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKD 156 Query: 371 ACDETEWNGRIILVEKS 321 +C E +GR I V+ S Sbjct: 157 SCSGIEVDGRRIRVDFS 173
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/70 (28%), Positives = 34/70 (48%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LF+ Y TE + K F+ +G D RTG S+GF ++ + ++A A Sbjct: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391 Query: 365 DETEWNGRII 336 D+ + GR++ Sbjct: 392 DKQIFQGRLL 401
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 42.0 bits (97), Expect = 0.002 Identities = 25/81 (30%), Positives = 40/81 (49%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 P LFV + T +LE F++FG +DK+TGDS + F+ +K +DA+ A Sbjct: 260 PENILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERA 319 Query: 377 IRACDETEWNGRIILVEKSKA 315 + R I V+ S++ Sbjct: 320 YFKMQNVLVDDRRIWVDFSQS 340
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/70 (34%), Positives = 35/70 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G ++TT+ L F+++G +DK T SRGFGF+ KD + + A Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF-KDPNCVGTVLAS 70 Query: 365 DETEWNGRII 336 +GR I Sbjct: 71 RPHTLDGRNI 80 Score = 38.5 bits (88), Expect = 0.018 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 +FV G + E EL++ F +FG D RGFGF++ E ++ D A+ Sbjct: 116 IFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/99 (27%), Positives = 47/99 (47%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N++V + A TE EL K F++ G D++ G S+GFGF+ E+A A++ Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKT 363 Query: 368 CDETEWNGRIILVEKSKAPAW*ILHPRALQAMLWVGGRV 252 ++G+ + V ++ R +Q + G RV Sbjct: 364 FHGQMFHGKPLYVAIAQKK-----EDRKMQLQVQFGNRV 397 Score = 40.8 bits (94), Expect = 0.004 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Frame = -3 Query: 596 WS--PPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P R+ G+G N+FV + T L+ F KFG G SRG Sbjct: 99 WSVRAPDARRNGVG----NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRG 153 Query: 422 FGFLSLEKDEDADAAIRACDET 357 +GF+ E+++ A AAI+ + T Sbjct: 154 YGFVQFEQEDAAHAAIQTLNST 175 Score = 35.8 bits (81), Expect = 0.12 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Frame = -3 Query: 578 RKTGLGKPGR---NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 +KT KP NL++ +E L +KFA+FG +D+ RG+ F++ Sbjct: 189 KKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL-CRGYAFVN 247 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSKAPA 309 + EDA A + T++ + + V +++ A Sbjct: 248 FDNPEDARRAAETVNGTKFGSKCLYVGRAQKKA 280 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +L+V + TE L FA+F +D +G S +G+ + +DA+ AI Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84 Query: 368 CDETEWNGRIILV 330 + + NG++I V Sbjct: 85 KNNSLLNGKMIRV 97
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/70 (34%), Positives = 35/70 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G ++TT+ L F+++G +DK T SRGFGF+ KD + + A Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF-KDPNCVGTVLAS 70 Query: 365 DETEWNGRII 336 +GR I Sbjct: 71 RPHTLDGRNI 80 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 +FV G + E EL + F KFG D RGFGF++ E ++ D A+ Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/86 (30%), Positives = 41/86 (47%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P+ R +G G N+F+ + + L + F+ FG D TG S+G+GF+ Sbjct: 128 PSTRLSGKG----NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQ 182 Query: 407 LEKDEDADAAIRACDETEWNGRIILV 330 EK+E A AAI + N + + V Sbjct: 183 FEKEESAQAAIDKLNGMLMNDKQVFV 208 Score = 35.0 bits (79), Expect = 0.20 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL++ + + +L++ F+++G + + G SRGFGF++ E+A A+ Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRAL 389 Query: 374 RACDETEWNGRII 336 +E NG++I Sbjct: 390 -----SEMNGKMI 397
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/70 (34%), Positives = 35/70 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G ++TT+ L F+++G +DK T SRGFGF+ KD + + A Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF-KDPNCVGTVLAS 70 Query: 365 DETEWNGRII 336 +GR I Sbjct: 71 RPHTLDGRNI 80 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 +FV G + E EL + F KFG D RGFGF++ E ++ D A+ Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/89 (30%), Positives = 40/89 (44%) Frame = -3 Query: 596 WSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFG 417 WS N K L PG N+FV G + + + EL F+K+G DK G+ G+G Sbjct: 182 WSIGVN-KHALTYPG-NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYG 239 Query: 416 FLSLEKDEDADAAIRACDETEWNGRIILV 330 F+S A I+ + NG + + Sbjct: 240 FISYPLGSQASLCIKELNGRTVNGSTLFI 268
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 42.0 bits (97), Expect = 0.002 Identities = 28/77 (36%), Positives = 38/77 (49%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R + V G + TT++++ + F KFG D T SRGF F+ E DA A Sbjct: 105 RCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKD 164 Query: 371 ACDETEWNGRIILVEKS 321 AC E +GR I V+ S Sbjct: 165 ACTGMEVDGRRIRVDYS 181
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/61 (36%), Positives = 31/61 (50%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R LF+ G Y TT+ L+ F K+G +D +T SRGFGF++ + D A Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83 Query: 371 A 369 A Sbjct: 84 A 84 Score = 34.7 bits (78), Expect = 0.27 Identities = 20/63 (31%), Positives = 25/63 (39%) Frame = -3 Query: 563 GKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 G + LFV G E L + F FG DK TG RGF F+ + + D Sbjct: 111 GATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVD 170 Query: 383 AAI 375 I Sbjct: 171 KII 173
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/75 (28%), Positives = 41/75 (54%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +FV S+ ++ L ++F ++G D ++G S+G+G++ E E A AA+ A Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 365 DETEWNGRIILVEKS 321 E +GR++ ++ S Sbjct: 325 GTKEIDGRMVNLDLS 339
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/69 (36%), Positives = 38/69 (55%) Frame = -3 Query: 593 SPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 +P A K G P R +FV G S TTE +L + F+ +G D R G S+G+GF Sbjct: 20 TPLAAPKYGTLIPNR-IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVD-RAGVSKGYGF 77 Query: 413 LSLEKDEDA 387 ++ E +++A Sbjct: 78 VTFETEQEA 86
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/70 (34%), Positives = 32/70 (45%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV SY T E ELE F+ FG D R S+GF ++ + A A R Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356 Query: 365 DETEWNGRII 336 D + GR++ Sbjct: 357 DGKIFQGRLL 366
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ R++G+G N+F+ A + + F+ FG D++ G+S+G Sbjct: 77 WSQRDPSLRRSGVG----NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKG 131 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEK 324 +GF+ E +E A+ +I + NG+ + V K Sbjct: 132 YGFVHFETEEAANTSIDKVNGMLLNGKKVYVGK 164 Score = 39.3 bits (90), Expect = 0.011 Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Frame = -3 Query: 590 PPANRKTGLGKPGR---NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGF 420 P R+ LG+ + N++V F+ + +L++ F +G K G S+GF Sbjct: 167 PRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMS-KEDGKSKGF 225 Query: 419 GFLSLEKDEDADAAIRACDETEW-NGRIILVEKSKAPA 309 GF++ E E A+AA++A + + G+ + V +++ A Sbjct: 226 GFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKA 263 Score = 34.3 bits (77), Expect = 0.35 Identities = 21/73 (28%), Positives = 32/73 (43%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL+V + L F+ +G D+ G S+GFGF+ +A A+ Sbjct: 286 GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAV 344 Query: 374 RACDETEWNGRII 336 TE NGR++ Sbjct: 345 -----TELNGRVV 352
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G TE ++ KFA++G D+RTG +G+ + E ++A AA+ Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134 Query: 365 DETEWNGRIILVE 327 + + G+ I V+ Sbjct: 135 NGQDLMGQPISVD 147
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV G TE ++ KFA++G D+RTG +G+ + E ++A AA+ Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134 Query: 365 DETEWNGRIILVE 327 + + G+ I V+ Sbjct: 135 NGQDLMGQPISVD 147
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +L + SY TT +L + F ++G RDK + S+GFGF+ + DA+ A+ Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79 Query: 368 CDETEWNGRIILVEKSK 318 D +GR + V +K Sbjct: 80 TDGKLVDGRELRVTLAK 96
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +L V +Y T+ L + F K+G RD+ T +SRGF F+ DA+ A+ A Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 368 CDETEWNGRIILVEKSK 318 D +GR + V+ ++ Sbjct: 74 MDGAVLDGRELRVQMAR 90
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +L V +Y T+ L + F K+G RD+ T +SRGF F+ DA+ A+ A Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 368 CDETEWNGRIILVEKSK 318 D +GR + V+ ++ Sbjct: 74 MDGAVLDGRELRVQMAR 90
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +L V +Y T+ L + F K+G RD+ T +SRGF F+ DA+ A+ A Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 368 CDETEWNGRIILVEKSK 318 D +GR + V+ ++ Sbjct: 74 MDGAVLDGRELRVQMAR 90
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +L V +Y T+ L + F K+G RD+ T +SRGF F+ DA+ A+ A Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 368 CDETEWNGRIILVEKSK 318 D +GR + V+ ++ Sbjct: 74 MDGAVLDGRELRVQMAR 90
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/77 (28%), Positives = 38/77 (49%) Frame = -3 Query: 566 LGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDA 387 + + GR LF+ Y + E + K F+ FG D RTG S+GF ++ + ++A Sbjct: 341 INQTGR-LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNA 399 Query: 386 DAAIRACDETEWNGRII 336 A D+ + GR++ Sbjct: 400 VNAYVELDKQIFQGRLL 416
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 41.2 bits (95), Expect = 0.003 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = -3 Query: 560 KPGRN-LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 KP N LFV + T + +L+ F++FG RDKRTGDS + F+ E +D + Sbjct: 244 KPPENVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCE 303 Query: 383 AA 378 A Sbjct: 304 QA 305
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 41.2 bits (95), Expect = 0.003 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -3 Query: 560 KPGRN-LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 KP N LFV + T + +L F++FG RDKRTGDS + F+ E +D + Sbjct: 244 KPPENVLFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCE 303 Query: 383 AA 378 A Sbjct: 304 QA 305
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +FV G Y TE ++ F+++G RDK+TG S+GF FL E A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 365 DETEWNGRIILVE 327 + + GR I V+ Sbjct: 98 NGIKIKGRTIRVD 110
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +L V +Y T+ L + F K+G RD+ T +SRGF F+ DA+ A+ A Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74 Query: 368 CDETEWNGRIILVEKSK 318 D +GR + V+ ++ Sbjct: 75 MDGAVLDGRELRVQMAR 91
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 40.8 bits (94), Expect = 0.004 Identities = 24/77 (31%), Positives = 37/77 (48%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R++FV Y E +EK F G RDK TG +GFG++ E + A++ Sbjct: 287 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 346 Query: 371 ACDETEWNGRIILVEKS 321 + +E GR + V +S Sbjct: 347 -LNNSELMGRKLRVMRS 362
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 40.8 bits (94), Expect = 0.004 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N++V + +TT+ +L+ F ++G +D G S+GFGF++ E +DA A+ + Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVES 274 Query: 368 C-----DETEW 351 D+ EW Sbjct: 275 LNGHKFDDKEW 285 Score = 36.2 bits (82), Expect = 0.092 Identities = 22/86 (25%), Positives = 38/86 (44%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P+ R++G G N+F+ + + L F+ FG D +G S+G+GF+ Sbjct: 116 PSVRRSGAG----NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQ 170 Query: 407 LEKDEDADAAIRACDETEWNGRIILV 330 +E A AI + N + + V Sbjct: 171 YANEESAQKAIEKLNGMLLNDKQVYV 196 Score = 30.0 bits (66), Expect = 6.6 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +L+V + T+ +L F + G RD T S G+G+++ +DA AI+ Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 368 CDETEWNGRIILV 330 + G+ I V Sbjct: 97 LNYIPLYGKPIRV 109
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 + +FV G S TT ++++ F +FG DK T RGFGF++ E ++ Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 +F+ G S+ TT+ L + F +FG RD T SRGFGF++ D + Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 40.4 bits (93), Expect = 0.005 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 +L V G + TTE++L++ F+ FG +D +TG S+GFGF+ + E Sbjct: 105 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 156
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/79 (32%), Positives = 37/79 (46%) Frame = -3 Query: 566 LGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDA 387 L GR LFV SY ++E +LEK F+ +G D T +GF F++ E A Sbjct: 396 LADSGR-LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 454 Query: 386 DAAIRACDETEWNGRIILV 330 A D + GR++ V Sbjct: 455 VKAYAEVDGQVFQGRMLHV 473 Score = 38.9 bits (89), Expect = 0.014 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGD---SRGFGFLSLEKDEDA 387 PG LF+ +++TTE L+ F+K G + K S GFGF+ +K E A Sbjct: 720 PGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQA 779 Query: 386 DAAIR 372 A++ Sbjct: 780 QKALK 784 Score = 34.7 bits (78), Expect = 0.27 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKR-TGDSRGFGFLSLEKDEDADAAIRA 369 + V + +RE+ + F+ FG + TG RGFGF+ +DA A A Sbjct: 826 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 885 Query: 368 -CDETEWNGRIILVE 327 C T GR +++E Sbjct: 886 LCHSTHLYGRRLVLE 900
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 40.4 bits (93), Expect = 0.005 Identities = 22/59 (37%), Positives = 28/59 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 LFV TE E+ F + G +DKRTG +G F+ +DAD AIRA Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180 Score = 33.9 bits (76), Expect = 0.45 Identities = 23/63 (36%), Positives = 31/63 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV + TE+E+E+ F +FG RD+ SRG GF+ E A AAI Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGL 271 Query: 365 DET 357 + T Sbjct: 272 NGT 274
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGD---SRGFGFLSLEKDEDAD 384 G ++V G Y ER+LE+ F +G RT D G+GF+ E DAD Sbjct: 2 GSRVYVGGLPYGVRERDLERFFKGYG-----------RTRDILIKNGYGFVEFEDYRDAD 50 Query: 383 AAIRACDETEWNGRIILVEKSKAPA 309 A+ + E G ++VE ++ A Sbjct: 51 DAVYELNGKELLGERVVVEPARGTA 75
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 40.4 bits (93), Expect = 0.005 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV E E+++KF +G D+RTG S+G+ + E + A AA A Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 Query: 365 DETEWNGRIILVE 327 + E G+ I V+ Sbjct: 135 NGAEIMGQTIQVD 147
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXR--DKRTGD---SRG 423 P++ T + P ++FV +++TT +L +KF F D + D S G Sbjct: 600 PSSEATAIDGPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMG 659 Query: 422 FGFLSLEKDEDADAAIRACDETEWNGRIILVEKS 321 FGF+ E A A I A D +G I ++ S Sbjct: 660 FGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKIS 693 Score = 40.4 bits (93), Expect = 0.005 Identities = 20/70 (28%), Positives = 34/70 (48%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LF+ Y TE + ++ F+ +G D RTG S+GF ++ + E A A Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 365 DETEWNGRII 336 D+ + GR++ Sbjct: 363 DKQIFQGRLL 372
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 40.4 bits (93), Expect = 0.005 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LFV Y +E +LE F+KFG D R+ S+GF ++ + + A A + Sbjct: 303 LFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKEL 362 Query: 365 DETEWNGRII 336 D + GR++ Sbjct: 363 DGKHFQGRLM 372
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 40.4 bits (93), Expect = 0.005 Identities = 23/62 (37%), Positives = 28/62 (45%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NLFV ER L F+ G G S+G+GF+S + E ADAAI Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157 Query: 374 RA 369 A Sbjct: 158 EA 159
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/79 (31%), Positives = 38/79 (48%) Frame = -3 Query: 563 GKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 G + ++V E+E+E F K+G D ++G F F+ E DA+ Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAE 60 Query: 383 AAIRACDETEWNGRIILVE 327 A+RA D E++GR I VE Sbjct: 61 DAVRARDGYEFDGRRIRVE 79
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 + +FV G S TT +++ F +FG DK T RGFGF++ E ++ Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 +F+ G S+ TT+ L + F +FG RD T SRGFGF++ D + Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 + +FV G S TT +++ F +FG DK T RGFGF++ E ++ Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161 Score = 37.4 bits (85), Expect = 0.041 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 +F+ G S+ TT+ L + F +FG RD T SRGFGF++ D + Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 78
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Frame = -3 Query: 575 KTGLGKPG------RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 K +PG NL+V T+ +L+ F K+G RDK TG RG F Sbjct: 182 KVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAF 241 Query: 413 LSLEKDEDADAAIRA 369 + K E+A AI A Sbjct: 242 VRFNKREEAQEAISA 256 Score = 34.7 bits (78), Expect = 0.27 Identities = 22/67 (32%), Positives = 30/67 (44%) Frame = -3 Query: 569 GLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDED 390 G G G NL V T+REL F G RD +TG S G+ F+ + D Sbjct: 104 GGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETD 163 Query: 389 ADAAIRA 369 + AI++ Sbjct: 164 SQRAIKS 170
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/77 (29%), Positives = 39/77 (50%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 ++V G +E L + F + G +D+ TG +G+GF+ +EDAD AI+ Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 365 DETEWNGRIILVEKSKA 315 + + G+ I V K+ A Sbjct: 75 NMIKLYGKPIRVNKASA 91 Score = 33.9 bits (76), Expect = 0.45 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXX-XXXRDKRTGDSRGFGFLSLEKDEDADAA 378 G N+F+ E+ L F+ FG RD TG+S+G+ F++ + +DAA Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158 Query: 377 IRA 369 I A Sbjct: 159 IEA 161
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/87 (27%), Positives = 39/87 (44%) Frame = -3 Query: 578 RKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEK 399 RKTG LF+ Y E + + F+++G + +TG +GF + E Sbjct: 298 RKTG------RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFED 351 Query: 398 DEDADAAIRACDETEWNGRIILVEKSK 318 E+A AA A D + GR++ + K Sbjct: 352 PENAIAAYEAQDGKIFQGRLLHILPGK 378 Score = 33.9 bits (76), Expect = 0.45 Identities = 19/79 (24%), Positives = 39/79 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 + + + T+++++K F FG + K +SRGF F ++A+ A+ A Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPK-KFNSESRGFAFAEYVSAKEAEHAMSAL 763 Query: 365 DETEWNGRIILVEKSKAPA 309 T GR ++++ ++A A Sbjct: 764 QGTHLLGRRLVLQYAQADA 782
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +F+ G Y TE ++ F+++G RDK+TG S+GF FL E A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 365 DETEWNGRIILVE 327 + + GR I V+ Sbjct: 98 NGIKIKGRTIRVD 110
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 LFV G S+ TT+ L + F +FG ++ +G SRGFGF++ Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVT 54 Score = 39.3 bits (90), Expect = 0.011 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = -3 Query: 587 PANRKTGLGKP----GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGF 420 P N +T L KP G +F+ G TE +L F ++G D+ SRGF Sbjct: 81 PCNPRT-LQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGF 139 Query: 419 GFLSLEKDEDAD 384 GFLS E++ + Sbjct: 140 GFLSFEEESSVE 151
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R +FV G + TT+ + + +++FG RD T SRGFGF++ + DAA++ Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82 Score = 37.7 bits (86), Expect = 0.031 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 + L+V+G TE L + F K+G DK T RGFGF++ + + D + Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 +L V G + TTE++L+ F+ FG +D +TG S+GFGF+ + E Sbjct: 105 DLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE 156
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 39.7 bits (91), Expect = 0.008 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Frame = -3 Query: 575 KTGLGKPG------RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 K +PG NL+V T+ +L+ F K+G RDK TG RG F Sbjct: 199 KVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAF 258 Query: 413 LSLEKDEDADAAIRA 369 + K E+A AI A Sbjct: 259 VRYNKREEAQEAISA 273 Score = 30.0 bits (66), Expect = 6.6 Identities = 19/59 (32%), Positives = 26/59 (44%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 NL V T+REL F G RD +TG S G+ F+ + D+ AI+ Sbjct: 128 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIK 186
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 39.7 bits (91), Expect = 0.008 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Frame = -3 Query: 575 KTGLGKPG------RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGF 414 K +PG NL+V T+ +L+ F K+G RDK TG RG F Sbjct: 197 KVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAF 256 Query: 413 LSLEKDEDADAAIRA 369 + K E+A AI A Sbjct: 257 VRYNKREEAQEAISA 271 Score = 30.0 bits (66), Expect = 6.6 Identities = 19/59 (32%), Positives = 26/59 (44%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 NL V T+REL F G RD +TG S G+ F+ + D+ AI+ Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIK 184
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/78 (29%), Positives = 38/78 (48%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + LFV T+ +L F+ F +D SRGFGF+S ++D A+ Sbjct: 26 KTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKR-SRGFGFVSFAVEDDTKEALA 84 Query: 371 ACDETEWNGRIILVEKSK 318 +T++NG I+ V+ +K Sbjct: 85 KARKTKFNGHILRVDIAK 102 Score = 33.5 bits (75), Expect = 0.59 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -3 Query: 584 ANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSL 405 + RK + ++FV Y TE L F+KFG DK TG ++G F++ Sbjct: 279 SKRKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338 Query: 404 E 402 + Sbjct: 339 K 339
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 39.3 bits (90), Expect = 0.011 Identities = 23/71 (32%), Positives = 34/71 (47%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 ++FV S T +++ FA FG +D TG S+G+GF+S DA+ AI+ Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166 Query: 368 CDETEWNGRII 336 GR I Sbjct: 167 MGGQWLGGRQI 177
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 39.3 bits (90), Expect = 0.011 Identities = 23/71 (32%), Positives = 34/71 (47%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 ++FV S T +++ FA FG +D TG S+G+GF+S DA+ AI+ Sbjct: 107 HVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166 Query: 368 CDETEWNGRII 336 GR I Sbjct: 167 MGGQWLGGRQI 177
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 39.3 bits (90), Expect = 0.011 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDK-RTGDSRGFGFLSLEKDEDADAA 378 G NL+V+G T++ELE FA FG ++ ++G GF+ +K E+A A Sbjct: 283 GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRA 342 Query: 377 IRACDET 357 I A + T Sbjct: 343 IIALNGT 349 Score = 37.4 bits (85), Expect = 0.041 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +F+ + T E L + F FG +D T +G+GF+S+ ++A AIRA Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 365 DETEWNGRIILV 330 + R++ V Sbjct: 500 NGYTMGNRVLQV 511
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 39.3 bits (90), Expect = 0.011 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDK-RTGDSRGFGFLSLEKDEDADAA 378 G NL+V+G T++ELE FA FG ++ ++G GF+ +K E+A A Sbjct: 247 GANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRA 306 Query: 377 IRACDET 357 I A + T Sbjct: 307 IIALNGT 313 Score = 37.4 bits (85), Expect = 0.041 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +F+ + T E L + F FG +D T +G+GF+S+ ++A AIRA Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 365 DETEWNGRIILV 330 + R++ V Sbjct: 464 NGYTMGNRVLQV 475
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 39.3 bits (90), Expect = 0.011 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 ++FV S T +++ FA FG +D TG S+G+GF+S DA+ AI Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 39.3 bits (90), Expect = 0.011 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 ++FV S T +++ FA FG +D TG S+G+GF+S DA+ AI Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 39.3 bits (90), Expect = 0.011 Identities = 23/71 (32%), Positives = 35/71 (49%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P+ R +G G N+F+ + + L + F+ FG D G S+G+GF+ Sbjct: 124 PSTRLSGKG----NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQ 178 Query: 407 LEKDEDADAAI 375 EK+E A AAI Sbjct: 179 FEKEETAQAAI 189 Score = 34.7 bits (78), Expect = 0.27 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NL++ + + +L++ F+++G + + G SRGFGF++ E+A A+ Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAM 385 Query: 374 RACDETEWNGRII 336 + E NG++I Sbjct: 386 K-----EMNGKMI 393
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 38.9 bits (89), Expect = 0.014 Identities = 22/78 (28%), Positives = 39/78 (50%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + +FV G S T ++++ F +FG DK T RGFGF++ E +ED + Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE-NEDVVEKVC 168 Query: 371 ACDETEWNGRIILVEKSK 318 E N +++ +K++ Sbjct: 169 EIHFHEINNKMVECKKAQ 186 Score = 37.7 bits (86), Expect = 0.031 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 PG+ +F+ G S+ T+ L F+KFG RD T SRGFGF++ D Sbjct: 20 PGK-MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78 Query: 377 I 375 + Sbjct: 79 L 79
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 38.9 bits (89), Expect = 0.014 Identities = 25/83 (30%), Positives = 41/83 (49%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 P LFV + T + +LE F++FG RDK++GDS + F+ ++ E A+ A Sbjct: 244 PENILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQA 303 Query: 377 IRACDETEWNGRIILVEKSKAPA 309 + R I V+ S++ A Sbjct: 304 YFKMQNVLVDDRRIWVDFSQSVA 326
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 38.9 bits (89), Expect = 0.014 Identities = 22/78 (28%), Positives = 39/78 (50%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 + +FV G S T ++++ F +FG DK T RGFGF++ E +ED + Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE-NEDVVEKVC 168 Query: 371 ACDETEWNGRIILVEKSK 318 E N +++ +K++ Sbjct: 169 EIHFHEINNKMVECKKAQ 186 Score = 37.7 bits (86), Expect = 0.031 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 PG+ +F+ G S+ T+ L F+KFG RD T SRGFGF++ D Sbjct: 20 PGK-MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78 Query: 377 I 375 + Sbjct: 79 L 79
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 38.5 bits (88), Expect = 0.018 Identities = 25/80 (31%), Positives = 37/80 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L V S T +EL KF ++G +D + F+ +E+ EDA Sbjct: 75 KTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVE 126 Query: 380 AIRACDETEWNGRIILVEKS 321 AIR D TE+ G+ + V+ S Sbjct: 127 AIRGLDNTEFQGKRMHVQLS 146
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 38.5 bits (88), Expect = 0.018 Identities = 26/80 (32%), Positives = 36/80 (45%) Frame = -3 Query: 581 NRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLE 402 N + G G P R L+V + TE L F FG +D TG S+G+GF++ Sbjct: 254 NLQKGNGGPMR-LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFS 312 Query: 401 KDEDADAAIRACDETEWNGR 342 E A A+ + E GR Sbjct: 313 DSECARRALEQLNGFELAGR 332
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 38.5 bits (88), Expect = 0.018 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 515 TERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACDETEWNGRII 336 TE +L +KF +G ++K TG+S+G G++ K A AI CD + R I Sbjct: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDR---SFRAI 188 Query: 335 LVE-KSKA 315 L E K+KA Sbjct: 189 LAEPKNKA 196
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 38.5 bits (88), Expect = 0.018 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL++ G TT+++L K +G DK T +G+GF+ + A A+ A Sbjct: 59 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTA 118 Score = 36.2 bits (82), Expect = 0.092 Identities = 24/71 (33%), Positives = 34/71 (47%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+++ + E+ELE FG RD +G SRG GF +E E +A I Sbjct: 138 NLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEKCEAII-- 194 Query: 368 CDETEWNGRII 336 T +NG+ I Sbjct: 195 ---THFNGKYI 202
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 38.5 bits (88), Expect = 0.018 Identities = 25/80 (31%), Positives = 37/80 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L V S T +EL KF ++G +D + F+ +E+ EDA Sbjct: 75 KTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVE 126 Query: 380 AIRACDETEWNGRIILVEKS 321 AIR D TE+ G+ + V+ S Sbjct: 127 AIRGLDNTEFQGKRMHVQLS 146
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 38.5 bits (88), Expect = 0.018 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = -3 Query: 596 WSPPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFG 417 W+P + P R +F+ Y E EL+K F KFG +DK T S+G+ Sbjct: 92 WNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYA 151 Query: 416 FL 411 F+ Sbjct: 152 FI 153
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 38.5 bits (88), Expect = 0.018 Identities = 22/70 (31%), Positives = 33/70 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LF+ +A + E+ F FG DK+T S+G F+S A AA RA Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAK 375 Query: 365 DETEWNGRII 336 D + + GR++ Sbjct: 376 DGSTFQGRLL 385
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 38.5 bits (88), Expect = 0.018 Identities = 21/76 (27%), Positives = 33/76 (43%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G +FV Y +E+++ + F + G D TG +G+GF E A+ Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65 Query: 374 RACDETEWNGRIILVE 327 R + +E R I VE Sbjct: 66 RKLNNSELGPRKIRVE 81
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 38.1 bits (87), Expect = 0.024 Identities = 25/80 (31%), Positives = 37/80 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L V S T +EL KF ++G +D + F+ +E+ EDA Sbjct: 75 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVE 126 Query: 380 AIRACDETEWNGRIILVEKS 321 AIR D TE+ G+ + V+ S Sbjct: 127 AIRGLDNTEFQGKRMHVQLS 146
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 38.1 bits (87), Expect = 0.024 Identities = 25/80 (31%), Positives = 37/80 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L V S T +EL KF ++G +D + F+ +E+ EDA Sbjct: 75 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVE 126 Query: 380 AIRACDETEWNGRIILVEKS 321 AIR D TE+ G+ + V+ S Sbjct: 127 AIRGLDNTEFQGKRMHVQLS 146
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 38.1 bits (87), Expect = 0.024 Identities = 25/80 (31%), Positives = 37/80 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L V S T +EL KF ++G +D + F+ +E+ EDA Sbjct: 75 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVE 126 Query: 380 AIRACDETEWNGRIILVEKS 321 AIR D TE+ G+ + V+ S Sbjct: 127 AIRGLDNTEFQGKRMHVQLS 146
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 38.1 bits (87), Expect = 0.024 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = -3 Query: 563 GKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 G G NLF+ +++L + F FG DK+T S+ FGF+S + A Sbjct: 397 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 456 Query: 383 AAIRA 369 AAI++ Sbjct: 457 AAIQS 461
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 38.1 bits (87), Expect = 0.024 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = -3 Query: 563 GKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 G G NLF+ +++L + F FG DK+T S+ FGF+S + A Sbjct: 397 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 456 Query: 383 AAIRA 369 AAI++ Sbjct: 457 AAIQS 461
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 38.1 bits (87), Expect = 0.024 Identities = 22/73 (30%), Positives = 36/73 (49%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G NLF+ + L+ +F+ FG D++ G S+GFGF+ E+A+ A+ Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421 Query: 374 RACDETEWNGRII 336 TE N R++ Sbjct: 422 -----TEMNQRML 429 Score = 37.0 bits (84), Expect = 0.054 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = -3 Query: 596 WSP--PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRG 423 WS P+ RK G G N+F+ A + L F+ FG D+ G+++G Sbjct: 155 WSQRDPSLRKMGTG----NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKG 209 Query: 422 FGFLSLEKDEDADAAI 375 +GF+ + E A+AAI Sbjct: 210 YGFVHFDSVESANAAI 225 Score = 36.6 bits (83), Expect = 0.070 Identities = 19/77 (24%), Positives = 37/77 (48%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 N+++ TE+E F +FG +D+ RGFGF++ E A A+ Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDE 320 Query: 368 CDETEWNGRIILVEKSK 318 ++ E+ G+ + V +++ Sbjct: 321 LNDKEYKGKKLYVGRAQ 337
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 38.1 bits (87), Expect = 0.024 Identities = 25/80 (31%), Positives = 34/80 (42%) Frame = -3 Query: 581 NRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLE 402 N + G P R L+V + TE L F FG D TG S+G+GF++ Sbjct: 241 NLQKGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS 299 Query: 401 KDEDADAAIRACDETEWNGR 342 E A A+ + E GR Sbjct: 300 DSECAKKALEQLNGFELAGR 319
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 38.1 bits (87), Expect = 0.024 Identities = 25/80 (31%), Positives = 34/80 (42%) Frame = -3 Query: 581 NRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLE 402 N + G P R L+V + TE L F FG D TG S+G+GF++ Sbjct: 241 NLQKGSAGPMR-LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS 299 Query: 401 KDEDADAAIRACDETEWNGR 342 E A A+ + E GR Sbjct: 300 DSECAKKALEQLNGFELAGR 319
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 38.1 bits (87), Expect = 0.024 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 +FV GF +TTE EL + F KF G S+G+GF++ E ++ A+ Sbjct: 69 IFVGGFPTSTTETELREHFEKF-FAVKDVKMVKSLDGQSKGYGFITFETEDQAE 121
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 38.1 bits (87), Expect = 0.024 Identities = 25/80 (31%), Positives = 37/80 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L V S T +EL KF ++G +D + F+ +E+ EDA Sbjct: 75 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVE 126 Query: 380 AIRACDETEWNGRIILVEKS 321 AIR D TE+ G+ + V+ S Sbjct: 127 AIRGLDNTEFQGKRMHVQLS 146
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 38.1 bits (87), Expect = 0.024 Identities = 25/80 (31%), Positives = 37/80 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L V S T +EL KF ++G +D + F+ +E+ EDA Sbjct: 75 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVE 126 Query: 380 AIRACDETEWNGRIILVEKS 321 AIR D TE+ G+ + V+ S Sbjct: 127 AIRGLDNTEFQGKRMHVQLS 146
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 37.7 bits (86), Expect = 0.031 Identities = 23/75 (30%), Positives = 35/75 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L+V S+ TTE ++ + F+K G DK + GF F+ DA+ Sbjct: 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 96 Query: 380 AIRACDETEWNGRII 336 A+R + T + RII Sbjct: 97 AMRYINGTRLDDRII 111
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 37.7 bits (86), Expect = 0.031 Identities = 23/75 (30%), Positives = 35/75 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L+V S+ TTE ++ + F+K G DK + GF F+ DA+ Sbjct: 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 96 Query: 380 AIRACDETEWNGRII 336 A+R + T + RII Sbjct: 97 AMRYINGTRLDDRII 111
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 37.7 bits (86), Expect = 0.031 Identities = 23/75 (30%), Positives = 35/75 (46%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L+V S+ TTE ++ + F+K G DK + GF F+ DA+ Sbjct: 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 96 Query: 380 AIRACDETEWNGRII 336 A+R + T + RII Sbjct: 97 AMRYINGTRLDDRII 111
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 37.7 bits (86), Expect = 0.031 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R+++V Y T ELE F G DK +G +GF ++ E ++ Sbjct: 167 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL- 225 Query: 371 ACDETEWNGRIILV 330 A DE+ + GR I V Sbjct: 226 ALDESLFRGRQIKV 239
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 37.7 bits (86), Expect = 0.031 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R+++V Y T ELE F G DK +G +GF ++ E ++ Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL- 229 Query: 371 ACDETEWNGRIILV 330 A DE+ + GR I V Sbjct: 230 ALDESLFRGRQIKV 243
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 37.7 bits (86), Expect = 0.031 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R+++V Y T ELE F G DK +G +GF ++ E ++ Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL- 229 Query: 371 ACDETEWNGRIILV 330 A DE+ + GR I V Sbjct: 230 ALDESLFRGRQIKV 243
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 37.7 bits (86), Expect = 0.031 Identities = 22/77 (28%), Positives = 38/77 (49%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 ++V G +E L + + G +D+ T + +GFGF+ +EDAD AI+ Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 365 DETEWNGRIILVEKSKA 315 + + G+ I V K+ A Sbjct: 75 NMIKLYGKPIKVNKASA 91 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXX-XXXRDKRTGDSRGFGFLSLEKDEDADAA 378 G N+FV E+ L F+ FG RD +G S+GF F++ E +D A Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158 Query: 377 IRA 369 + A Sbjct: 159 LEA 161
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 37.7 bits (86), Expect = 0.031 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL++ G TT+++L K +G DK T +G+GF+ + A A+ A Sbjct: 57 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 116 Score = 36.6 bits (83), Expect = 0.070 Identities = 24/71 (33%), Positives = 34/71 (47%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+++ + E+ELE FG RD +G SRG GF +E E +A I Sbjct: 136 NLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAII-- 192 Query: 368 CDETEWNGRII 336 T +NG+ I Sbjct: 193 ---THFNGKYI 200
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 37.7 bits (86), Expect = 0.031 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = -3 Query: 557 PGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 P LFV + T + +LE F++FG RDK TGDS + F+ + E + A Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 37.4 bits (85), Expect = 0.041 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 +P + +FV G S T E ++ + F FG D +T RGF F++ +++E Sbjct: 31 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 86
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 37.4 bits (85), Expect = 0.041 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIR 372 R +FV F Y T + +LE+ F K+G R G+ F+ E + DA+ AIR Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRV--------DRVDMKSGYAFVYFEDERDAEDAIR 53 Query: 371 ACD 363 D Sbjct: 54 KLD 56 Score = 36.6 bits (83), Expect = 0.070 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Frame = -3 Query: 560 KPGRNLFVAGFS-YATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 KP + LFV F T E ++EK F +G R F F+ E EDA Sbjct: 90 KPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR--------RNFSFVQFETQEDAT 141 Query: 383 AAIRACDETEWNGRIILVE 327 A+ A ++ R++ VE Sbjct: 142 KALEATQRSKILDRVVSVE 160
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 37.4 bits (85), Expect = 0.041 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P +K + L + S+ +E +L+ FA+FG R K G RGFGF+ Sbjct: 101 PKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQ 159 Query: 407 LEKDEDADAAIRACDETEWNGRIILVE 327 + +A A++ + E GR + V+ Sbjct: 160 FKNLLEAGKALKGMNMKEIKGRTVAVD 186 Score = 30.8 bits (68), Expect = 3.8 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = -3 Query: 554 GRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 G LFV + +LE+ F++ G +K + RGFG+++ ED A+ Sbjct: 2 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 374 RACDETEWNGRIILVEKSK 318 + E + V K K Sbjct: 62 KEITTFEGCKINVTVAKKK 80
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 37.4 bits (85), Expect = 0.041 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 +FV S++ + L+K+F G ++ T SRG+G++ E A+ AI+ Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 365 DETEWNGRIILVEKS 321 E +GR I + S Sbjct: 230 QGKEIDGRPINCDMS 244 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/64 (26%), Positives = 26/64 (40%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 +P LF+ S+ + + FAK G T +GFG++ EDA Sbjct: 264 EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKK 323 Query: 380 AIRA 369 A+ A Sbjct: 324 ALDA 327
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 37.4 bits (85), Expect = 0.041 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -3 Query: 515 TERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACDET 357 TE +L +KF +G ++K TG+S+G G++ K A AI CD + Sbjct: 132 TEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRS 184
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 37.4 bits (85), Expect = 0.041 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -3 Query: 515 TERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACDET 357 TE +L +KF +G ++K TG+S+G G++ K A AI CD + Sbjct: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRS 184
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 37.4 bits (85), Expect = 0.041 Identities = 22/75 (29%), Positives = 34/75 (45%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 LF+ TE L+ F K+ D T S G G+L+ E E+A+ A+ Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 365 DETEWNGRIILVEKS 321 + T+ NG+ I + S Sbjct: 153 NYTKVNGKEIRIMPS 167
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 37.0 bits (84), Expect = 0.054 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -3 Query: 503 LEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRACDETEWNGRIILVEK 324 L F+ +G D+ T SRGFGF++ +E +AI + E +GR I V + Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62 Query: 323 SKA 315 +++ Sbjct: 63 AQS 65
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 37.0 bits (84), Expect = 0.054 Identities = 28/114 (24%), Positives = 51/114 (44%) Frame = -3 Query: 575 KTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKD 396 + G PG +++ A E +L + F++FG R K+TG+S+G+ ++ E D Sbjct: 34 QVGAVSPGV-IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECD 92 Query: 395 EDADAAIRACDETEWNGRIILVEKSKAPAW*ILHPRALQAMLWVGGRVCTAFYR 234 E A + + R++ E + P + L++G CTA +R Sbjct: 93 EVAKIVADTMNNYLFCERLLKCE--------FVPPEKVHPRLFIG---CTAKFR 135
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 37.0 bits (84), Expect = 0.054 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDE 393 +P + +FV G S T E ++ + F FG D +T RGF F++ ++E Sbjct: 169 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFNQEE 224
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 37.0 bits (84), Expect = 0.054 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +FV G E E+ FA++G D RTG S+G+GF+S D D + + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIVES 99
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 37.0 bits (84), Expect = 0.054 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = -3 Query: 560 KPGRN-LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDAD 384 KP N LFV + T + +LE F +FG RD++TGDS + F+ E + Sbjct: 247 KPPENVLFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCE 306 Query: 383 AA 378 AA Sbjct: 307 AA 308
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 37.0 bits (84), Expect = 0.054 Identities = 21/58 (36%), Positives = 29/58 (50%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAA 378 R LF+ G + TTE L+ + ++G RD T SRGFGF++ K D A Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA 89 Score = 36.6 bits (83), Expect = 0.070 Identities = 20/59 (33%), Positives = 26/59 (44%) Frame = -3 Query: 551 RNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAI 375 + LFV G E L + F +FG DK TG RGF F+ + + D AI Sbjct: 123 KKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 36.6 bits (83), Expect = 0.070 Identities = 22/75 (29%), Positives = 34/75 (45%) Frame = -3 Query: 560 KPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADA 381 K L+V S+ TTE ++ + F+K G DK + GF F+ DA Sbjct: 29 KQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGT 88 Query: 380 AIRACDETEWNGRII 336 A+R + T + RI+ Sbjct: 89 AMRFINGTRLDDRIV 103
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 36.6 bits (83), Expect = 0.070 Identities = 26/95 (27%), Positives = 39/95 (41%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRAC 366 L+V E +L+ F +FG R K+TG S+G+GF+ E DE A Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 365 DETEWNGRIILVEKSKAPAW*ILHPRALQAMLWVG 261 + RII ++ P + L+VG Sbjct: 107 NNYLMGERIIKCH--------VIPPEKVHEKLFVG 133
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 36.6 bits (83), Expect = 0.070 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +FV G E E+ FA++G D RTG S+G+GF+S D D + + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVES 99
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 36.6 bits (83), Expect = 0.070 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -3 Query: 545 LFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 +FV G E E+ FA++G D RTG S+G+GF+S D D + + Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVES 99
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 36.2 bits (82), Expect = 0.092 Identities = 26/91 (28%), Positives = 40/91 (43%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P+ +P R L V+ + + +L + F +FG ++R S+GFGF++ Sbjct: 106 PSENTENKSQPKR-LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVT 162 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSKA 315 E DAD A T GR I V + A Sbjct: 163 FENSADADRAREKLHGTVVEGRKIEVNNATA 193
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 36.2 bits (82), Expect = 0.092 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL++ G TT+++L K +G DK T +G+GF+ + A A+ A Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSA 122 Score = 35.4 bits (80), Expect = 0.16 Identities = 23/71 (32%), Positives = 33/71 (46%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+++ + E+ELE FG RD +G SRG GF +E E +A I Sbjct: 142 NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGASRGVGFARMESTEKCEAVI-- 198 Query: 368 CDETEWNGRII 336 +NG+ I Sbjct: 199 ---GHFNGKFI 206
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 36.2 bits (82), Expect = 0.092 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL++ G TT+++L K +G DK T +G+GF+ + A A+ A Sbjct: 63 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 122 Score = 35.8 bits (81), Expect = 0.12 Identities = 23/71 (32%), Positives = 33/71 (46%) Frame = -3 Query: 548 NLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLSLEKDEDADAAIRA 369 NL+++ + E+ELE FG RD +G SRG GF +E E +A I Sbjct: 142 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVI-- 198 Query: 368 CDETEWNGRII 336 +NG+ I Sbjct: 199 ---GHFNGKFI 206
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 36.2 bits (82), Expect = 0.092 Identities = 26/91 (28%), Positives = 40/91 (43%) Frame = -3 Query: 587 PANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFLS 408 P+ +P R L V+ + + +L + F +FG ++R S+GFGF++ Sbjct: 105 PSENTESKSQPKR-LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVT 161 Query: 407 LEKDEDADAAIRACDETEWNGRIILVEKSKA 315 E DAD A T GR I V + A Sbjct: 162 FENSADADRAREKLHGTVVEGRKIEVNNATA 192
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 36.2 bits (82), Expect = 0.092 Identities = 26/92 (28%), Positives = 45/92 (48%) Frame = -3 Query: 590 PPANRKTGLGKPGRNLFVAGFSYATTERELEKKFAKFGXXXXXXXXRDKRTGDSRGFGFL 411 P + +G P R L V+ + + +L+ F KFG ++R S+GFGF+ Sbjct: 141 PDPSTSSGPDGPKR-LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNER--GSKGFGFV 197 Query: 410 SLEKDEDADAAIRACDETEWNGRIILVEKSKA 315 ++E+ +DA+ A + + GR I V + A Sbjct: 198 TMERPQDAERARQELHGSMIEGRKIEVNCATA 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,534,530 Number of Sequences: 219361 Number of extensions: 1857310 Number of successful extensions: 5009 Number of sequences better than 10.0: 325 Number of HSP's better than 10.0 without gapping: 4582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4972 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
