ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27h17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106074.1| Zea mays PCO102368 mRNA sequence 369 8e-99
2dbj|AK101567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 3e-83
3dbj|AK073559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 3e-83
4dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
6dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
7dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
8ref|NM_193801.1| Oryza sativa (japonica cultivar-group), predic... 168 1e-38
9gb|AC157659.2| Mus musculus BAC clone RP23-275J9 from chromosome... 48 0.038
10gb|AC174446.2| Mus musculus BAC clone RP23-356N23 from chromosom... 48 0.038
11gb|AC156572.3| Mus musculus BAC clone RP23-216C6 from chromosome... 42 2.3
12gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cance... 42 2.3
13gb|AC146607.2| Mus musculus BAC clone RP23-209N19 from chromosom... 42 2.3
14emb|AL035468.3|HS424E5 Human DNA sequence from clone RP3-424E5 o... 42 2.3
15emb|AJ243024.1|MMU243024 Mus musculus partial FBPase 2 gene for ... 42 2.3
16gb|AC007879.4| Homo sapiens BAC clone RP11-309L6 from 2, complet... 42 2.3
17gb|AC012446.4| Homo sapiens BAC clone RP11-101A12 from 2, comple... 42 2.3
18gb|AC091888.3| Homo sapiens chromosome 5 clone RP11-11K15, compl... 42 2.3
19gb|AY961519.1| Lysiphlebus testaceipes ribosomal protein L3 (RpL... 42 2.3
20gb|AF032898.1|AF032898 Rattus norvegicus histone H2A and histone... 42 2.3
21gb|BC079458.1| Rattus norvegicus histone 1, H2bh, mRNA (cDNA clo... 42 2.3
22gb|AC171004.2| Mus musculus BAC clone RP23-67N16 from chromosome... 42 2.3
23emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chro... 42 2.3
24gb|BT011339.1| Drosophila melanogaster RH62603 full insert cDNA 40 9.2
25ref|XM_765871.1| Giardia lamblia ATCC 50803 ATP dependent DNA he... 40 9.2
26gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete se... 40 9.2
27emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on ch... 40 9.2
28emb|AL133341.12| Human DNA sequence from clone RP3-342O24 on chr... 40 9.2
29ref|NM_169380.1| Drosophila melanogaster Ribosomal protein L3 CG... 40 9.2
30ref|NM_169379.1| Drosophila melanogaster Ribosomal protein L3 CG... 40 9.2
31ref|NM_169378.1| Drosophila melanogaster Ribosomal protein L3 CG... 40 9.2
32ref|NM_079592.2| Drosophila melanogaster Ribosomal protein L3 CG... 40 9.2
33gb|AC093864.3| Homo sapiens BAC clone RP11-557J10 from 4, comple... 40 9.2
34gb|AC006491.24|AC006491 Drosophila melanogaster, chromosome 3R, ... 40 9.2
35emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chr... 40 9.2
36emb|BX649503.3| Zebrafish DNA sequence from clone DKEYP-90A8 in ... 40 9.2
37gb|AE003690.3| Drosophila melanogaster chromosome 3R, section 28... 40 9.2
38gb|AF016835.1|AF016835 Drosophila melanogaster ribosomal protein... 40 9.2 
>gb|AY106074.1| Zea mays PCO102368 mRNA sequence
          Length = 1202

 Score =  369 bits (186), Expect = 8e-99
 Identities = 326/373 (87%), Gaps = 6/373 (1%)
 Strand = Plus / Minus

                                                                       
Query: 298 aagattcaccatgcaggtgccttggacttctccacaagaatgatcctaccattccactct 357
           |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 616 aagattcaccatgcaggtgcttttgacttctccacaagaatgatccttccattccactca 557

                                                                       
Query: 358 gtctcgtcgcaagctcggattgctgcatcagcgtcctcgtccttctccagggatagaaat 417
           |||||||| ||||| ||||||||||||||||| ||||| ||||| |||| |||||  |||
Sbjct: 556 gtctcgtcacaagcacggattgctgcatcagcatcctcatccttatccaaggataagaat 497

                                                                       
Query: 418 ccaaagcctcgagaatctccagttcgtttatctcggacaacccgtacccttgttacacgt 477
           |||||||| || |||||||||||||||||||| || ||||| ||| | ||||||||||||
Sbjct: 496 ccaaagccacgggaatctccagttcgtttatcacgaacaacacgtgcacttgttacacgt 437

                                                                       
Query: 478 ccaaacttagcaaatttcttctccaactctcgctctgtggtggcatagctaaagcctgca 537
           ||||||||   ||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 436 ccaaacttgcaaaatttcttctccaaatctcgctcagtggtggcatagctaaatcctgca 377

                                                                       
Query: 538 acaaacagattccgtccaggcttacccaatccagtcttcctattggcaggtggtgaccaa 597
           | ||| ||||||  ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 376 ataaagagattctttccaggcttacccaatccagtcttcctgttggcaggtggtgaccaa 317

                                                                       
Query: 598 catcttttaggagaat------gctgccttgctggaggtgatctgtgccttggtgaatgc 651
             |||| | || ||||      | || || ||||| ||||||||| | ||||||||||||
Sbjct: 316 tgtcttcttggtgaatgatggcgatgactggctgggggtgatctgcgtcttggtgaatgc 257

                        
Query: 652 cttcttggagatc 664
           |||||||||||||
Sbjct: 256 cttcttggagatc 244



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 58  gcagcagtgccctgaaacaagctaaggt 85
           ||||||| ||||||||||||||||||||
Sbjct: 861 gcagcagggccctgaaacaagctaaggt 834
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>dbj|AK101567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050F16, full
            insert sequence
          Length = 3056

 Score =  317 bits (160), Expect = 3e-83
 Identities = 269/304 (88%), Gaps = 1/304 (0%)
 Strand = Plus / Minus

                                                                        
Query: 293  ggtgtaagattcaccatgcaggtgccttggacttctccacaagaatgatcctaccattcc 352
            |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 2404 ggtgtaagattcaccatgtaggtgcctttgacttctccacaagaatgatcctaccgttcc 2345

                                                                        
Query: 353  actctgtctcgtcgcaagctcggattgctgcatcagcgtcctcgtccttctccagggata 412
            |||| ||||| || ||||| || || ||||||||||| ||||| ||||||||||  ||||
Sbjct: 2344 actcagtctcatcacaagcacgaatcgctgcatcagcatcctcatccttctccaaagata 2285

                                                                        
Query: 413  gaaatccaaagcctcgagaatctccagttcgtttatctcggacaacccgtacccttgtta 472
              || ||||||||||||||||| |||| || |||||| || ||||| ||| | ||||| |
Sbjct: 2284 agaaaccaaagcctcgagaatccccagatcttttatcccgaacaacacgtgcacttgtca 2225

                                                                        
Query: 473  cacgtccaaacttagcaaatttcttctccaactctcgctctgtggtggcatagctaaagc 532
            |||| ||| ||||||  |||||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct: 2224 cacgcccatacttagagaatttcttttccaaatctcgctcagtggtggcataactaaa-c 2166

                                                                        
Query: 533  ctgcaacaaacagattccgtccaggcttacccaatccagtcttcctattggcaggtggtg 592
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2165 ctgcaacaaacagattccgtccaggcttacccaatccagtcttcctgttggcaggtggtg 2106

                
Query: 593  acca 596
            ||||
Sbjct: 2105 acca 2102



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 78/88 (88%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   gcagcagtgccctgaaacaagctaaggtttggcatatcatcttattcttcaataactgtc 117
            ||||||| |||||||||||||||||||| || |||| |||||||||| |   ||| ||||
Sbjct: 2638 gcagcagggccctgaaacaagctaaggtgtgacataacatcttattcgt-tgtaattgtc 2580

                                        
Query: 118  agcaaggtagccatagcaagtgcattat 145
            |||||||||||||||| |||||||||||
Sbjct: 2579 agcaaggtagccataggaagtgcattat 2552



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 625  ggaggtgatctgtgccttggtgaatgccttcttggagatc 664
            |||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 2067 ggagatgatctgcgccgtggtgaatgccttcttggagatc 2028
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>dbj|AK073559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043J16, full
            insert sequence
          Length = 1904

 Score =  317 bits (160), Expect = 3e-83
 Identities = 268/304 (88%)
 Strand = Plus / Minus

                                                                        
Query: 293  ggtgtaagattcaccatgcaggtgccttggacttctccacaagaatgatcctaccattcc 352
            |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 1252 ggtgtaagattcaccatgtaggtgcctttgacttctccacaagaatgatcctaccgttcc 1193

                                                                        
Query: 353  actctgtctcgtcgcaagctcggattgctgcatcagcgtcctcgtccttctccagggata 412
            |||| ||||| || ||||| || || ||||||||||| ||||| ||||||||||  ||||
Sbjct: 1192 actcagtctcatcacaagcacgaatcgctgcatcagcatcctcatccttctccaaagata 1133

                                                                        
Query: 413  gaaatccaaagcctcgagaatctccagttcgtttatctcggacaacccgtacccttgtta 472
              || ||||||||||||||||| |||| || |||||| || ||||| ||| | ||||| |
Sbjct: 1132 agaaaccaaagcctcgagaatccccagatcttttatcccgaacaacacgtgcacttgtca 1073

                                                                        
Query: 473  cacgtccaaacttagcaaatttcttctccaactctcgctctgtggtggcatagctaaagc 532
            |||| ||| ||||||  |||||||| ||||| |||||||| ||| ||||||| ||||| |
Sbjct: 1072 cacgcccatacttagagaatttcttttccaaatctcgctcagtgatggcataactaaaac 1013

                                                                        
Query: 533  ctgcaacaaacagattccgtccaggcttacccaatccagtcttcctattggcaggtggtg 592
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1012 ctgcaacaaacagattccgtccaggcttacccaatccagtcttcctgttggcaggtggtg 953

                
Query: 593  acca 596
            ||||
Sbjct: 952  acca 949



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 78/88 (88%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   gcagcagtgccctgaaacaagctaaggtttggcatatcatcttattcttcaataactgtc 117
            ||||||| |||||||||||||||||||| || |||| |||||||||| |   ||| ||||
Sbjct: 1486 gcagcagggccctgaaacaagctaaggtgtgacataacatcttattcgt-tgtaattgtc 1428

                                        
Query: 118  agcaaggtagccatagcaagtgcattat 145
            |||||||||||||||| |||||||||||
Sbjct: 1427 agcaaggtagccataggaagtgcattat 1400



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 625 ggaggtgatctgtgccttggtgaatgccttcttggagatc 664
           |||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 914 ggagatgatctgcgccgtggtgaatgccttcttggagatc 875
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>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0560B06
          Length = 161720

 Score =  176 bits (89), Expect = 6e-41
 Identities = 137/153 (89%)
 Strand = Plus / Plus

                                                                        
Query: 444  tttatctcggacaacccgtacccttgttacacgtccaaacttagcaaatttcttctccaa 503
            |||||| || ||||| ||| | ||||| ||||| ||| ||||||  |||||||| |||||
Sbjct: 7472 tttatcccgaacaacacgtgcacttgtcacacgcccatacttagagaatttcttttccaa 7531

                                                                        
Query: 504  ctctcgctctgtggtggcatagctaaagcctgcaacaaacagattccgtccaggcttacc 563
             |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 7532 atctcgctcagtggtggcataactaaaacctgcaacaaacagattccgtccaggcttacc 7591

                                             
Query: 564  caatccagtcttcctattggcaggtggtgacca 596
            ||||||||||||||| |||||||||||||||||
Sbjct: 7592 caatccagtcttcctgttggcaggtggtgacca 7624



 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Plus

                                                                        
Query: 293  ggtgtaagattcaccatgcaggtgccttggacttctccacaagaatgatcctaccattcc 352
            |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 5711 ggtgtaagattcaccatgtaggtgcctttgacttctccacaagaatgatcctaccgttcc 5770

                                                                        
Query: 353  actctgtctcgtcgcaagctcggattgctgcatcagcgtcctcgtccttctccagggata 412
            |||| ||||| || ||||| || || ||||||||||| ||||| ||||||||||  ||||
Sbjct: 5771 actcagtctcatcacaagcacgaatcgctgcatcagcatcctcatccttctccaaagata 5830

                                       
Query: 413  gaaatccaaagcctcgagaatctccag 439
              || ||||||||||||||||| ||||
Sbjct: 5831 agaaaccaaagcctcgagaatccccag 5857



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 78/88 (88%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                        
Query: 58   gcagcagtgccctgaaacaagctaaggtttggcatatcatcttattcttcaataactgtc 117
            ||||||| |||||||||||||||||||| || |||| |||||||||| |   ||| ||||
Sbjct: 5477 gcagcagggccctgaaacaagctaaggtgtgacataacatcttattcgt-tgtaattgtc 5535

                                        
Query: 118  agcaaggtagccatagcaagtgcattat 145
            |||||||||||||||| |||||||||||
Sbjct: 5536 agcaaggtagccataggaagtgcattat 5563



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 625  ggaggtgatctgtgccttggtgaatgccttct 656
            |||| ||||||| ||| |||||||||||||||
Sbjct: 7659 ggagatgatctgcgccgtggtgaatgccttct 7690
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  176 bits (89), Expect = 6e-41
 Identities = 137/153 (89%)
 Strand = Plus / Plus

                                                                            
Query: 444      tttatctcggacaacccgtacccttgttacacgtccaaacttagcaaatttcttctccaa 503
                |||||| || ||||| ||| | ||||| ||||| ||| ||||||  |||||||| |||||
Sbjct: 14991420 tttatcccgaacaacacgtgcacttgtcacacgcccatacttagagaatttcttttccaa 14991479

                                                                            
Query: 504      ctctcgctctgtggtggcatagctaaagcctgcaacaaacagattccgtccaggcttacc 563
                 |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 14991480 atctcgctcagtggtggcataactaaaacctgcaacaaacagattccgtccaggcttacc 14991539

                                                 
Query: 564      caatccagtcttcctattggcaggtggtgacca 596
                ||||||||||||||| |||||||||||||||||
Sbjct: 14991540 caatccagtcttcctgttggcaggtggtgacca 14991572



 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Plus

                                                                            
Query: 293      ggtgtaagattcaccatgcaggtgccttggacttctccacaagaatgatcctaccattcc 352
                |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 14989659 ggtgtaagattcaccatgtaggtgcctttgacttctccacaagaatgatcctaccgttcc 14989718

                                                                            
Query: 353      actctgtctcgtcgcaagctcggattgctgcatcagcgtcctcgtccttctccagggata 412
                |||| ||||| || ||||| || || ||||||||||| ||||| ||||||||||  ||||
Sbjct: 14989719 actcagtctcatcacaagcacgaatcgctgcatcagcatcctcatccttctccaaagata 14989778

                                           
Query: 413      gaaatccaaagcctcgagaatctccag 439
                  || ||||||||||||||||| ||||
Sbjct: 14989779 agaaaccaaagcctcgagaatccccag 14989805



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 78/88 (88%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                            
Query: 58       gcagcagtgccctgaaacaagctaaggtttggcatatcatcttattcttcaataactgtc 117
                ||||||| |||||||||||||||||||| || |||| |||||||||| |   ||| ||||
Sbjct: 14989425 gcagcagggccctgaaacaagctaaggtgtgacataacatcttattcgt-tgtaattgtc 14989483

                                            
Query: 118      agcaaggtagccatagcaagtgcattat 145
                |||||||||||||||| |||||||||||
Sbjct: 14989484 agcaaggtagccataggaagtgcattat 14989511



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 625      ggaggtgatctgtgccttggtgaatgccttct 656
                |||| ||||||| ||| |||||||||||||||
Sbjct: 14991607 ggagatgatctgcgccgtggtgaatgccttct 14991638
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>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0784G04
          Length = 157458

 Score =  176 bits (89), Expect = 6e-41
 Identities = 137/153 (89%)
 Strand = Plus / Plus

                                                                         
Query: 444   tttatctcggacaacccgtacccttgttacacgtccaaacttagcaaatttcttctccaa 503
             |||||| || ||||| ||| | ||||| ||||| ||| ||||||  |||||||| |||||
Sbjct: 31054 tttatcccgaacaacacgtgcacttgtcacacgcccatacttagagaatttcttttccaa 31113

                                                                         
Query: 504   ctctcgctctgtggtggcatagctaaagcctgcaacaaacagattccgtccaggcttacc 563
              |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 31114 atctcgctcagtggtggcataactaaaacctgcaacaaacagattccgtccaggcttacc 31173

                                              
Query: 564   caatccagtcttcctattggcaggtggtgacca 596
             ||||||||||||||| |||||||||||||||||
Sbjct: 31174 caatccagtcttcctgttggcaggtggtgacca 31206



 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Plus

                                                                         
Query: 293   ggtgtaagattcaccatgcaggtgccttggacttctccacaagaatgatcctaccattcc 352
             |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 29294 ggtgtaagattcaccatgtaggtgcctttgacttctccacaagaatgatcctaccgttcc 29353

                                                                         
Query: 353   actctgtctcgtcgcaagctcggattgctgcatcagcgtcctcgtccttctccagggata 412
             |||| ||||| || ||||| || || ||||||||||| ||||| ||||||||||  ||||
Sbjct: 29354 actcagtctcatcacaagcacgaatcgctgcatcagcatcctcatccttctccaaagata 29413

                                        
Query: 413   gaaatccaaagcctcgagaatctccag 439
               || ||||||||||||||||| ||||
Sbjct: 29414 agaaaccaaagcctcgagaatccccag 29440



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 78/88 (88%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                         
Query: 58    gcagcagtgccctgaaacaagctaaggtttggcatatcatcttattcttcaataactgtc 117
             ||||||| |||||||||||||||||||| || |||| |||||||||| |   ||| ||||
Sbjct: 29060 gcagcagggccctgaaacaagctaaggtgtgacataacatcttattcgt-tgtaattgtc 29118

                                         
Query: 118   agcaaggtagccatagcaagtgcattat 145
             |||||||||||||||| |||||||||||
Sbjct: 29119 agcaaggtagccataggaagtgcattat 29146



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 625   ggaggtgatctgtgccttggtgaatgccttct 656
             |||| ||||||| ||| |||||||||||||||
Sbjct: 31241 ggagatgatctgcgccgtggtgaatgccttct 31272
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>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1329D01
          Length = 141938

 Score =  176 bits (89), Expect = 6e-41
 Identities = 137/153 (89%)
 Strand = Plus / Plus

                                                                         
Query: 444   tttatctcggacaacccgtacccttgttacacgtccaaacttagcaaatttcttctccaa 503
             |||||| || ||||| ||| | ||||| ||||| ||| ||||||  |||||||| |||||
Sbjct: 17667 tttatcccgaacaacacgtgcacttgtcacacgcccatacttagagaatttcttttccaa 17726

                                                                         
Query: 504   ctctcgctctgtggtggcatagctaaagcctgcaacaaacagattccgtccaggcttacc 563
              |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 17727 atctcgctcagtggtggcataactaaaacctgcaacaaacagattccgtccaggcttacc 17786

                                              
Query: 564   caatccagtcttcctattggcaggtggtgacca 596
             ||||||||||||||| |||||||||||||||||
Sbjct: 17787 caatccagtcttcctgttggcaggtggtgacca 17819



 Score =  157 bits (79), Expect = 6e-35
 Identities = 130/147 (88%)
 Strand = Plus / Plus

                                                                         
Query: 293   ggtgtaagattcaccatgcaggtgccttggacttctccacaagaatgatcctaccattcc 352
             |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 15906 ggtgtaagattcaccatgtaggtgcctttgacttctccacaagaatgatcctaccgttcc 15965

                                                                         
Query: 353   actctgtctcgtcgcaagctcggattgctgcatcagcgtcctcgtccttctccagggata 412
             |||| ||||| || ||||| || || ||||||||||| ||||| ||||||||||  ||||
Sbjct: 15966 actcagtctcatcacaagcacgaatcgctgcatcagcatcctcatccttctccaaagata 16025

                                        
Query: 413   gaaatccaaagcctcgagaatctccag 439
               || ||||||||||||||||| ||||
Sbjct: 16026 agaaaccaaagcctcgagaatccccag 16052



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 78/88 (88%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                         
Query: 58    gcagcagtgccctgaaacaagctaaggtttggcatatcatcttattcttcaataactgtc 117
             ||||||| |||||||||||||||||||| || |||| |||||||||| |   ||| ||||
Sbjct: 15672 gcagcagggccctgaaacaagctaaggtgtgacataacatcttattcgt-tgtaattgtc 15730

                                         
Query: 118   agcaaggtagccatagcaagtgcattat 145
             |||||||||||||||| |||||||||||
Sbjct: 15731 agcaaggtagccataggaagtgcattat 15758



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 625   ggaggtgatctgtgccttggtgaatgccttct 656
             |||| ||||||| ||| |||||||||||||||
Sbjct: 17854 ggagatgatctgcgccgtggtgaatgccttct 17885
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>ref|NM_193801.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1149

 Score =  168 bits (85), Expect = 1e-38
 Identities = 115/125 (92%)
 Strand = Plus / Minus

                                                                        
Query: 472  acacgtccaaacttagcaaatttcttctccaactctcgctctgtggtggcatagctaaag 531
            ||||| ||| ||||||  |||||||| ||||| |||||||| ||||||||||| ||||| 
Sbjct: 1147 acacgcccatacttagagaatttcttttccaaatctcgctcagtggtggcataactaaaa 1088

                                                                        
Query: 532  cctgcaacaaacagattccgtccaggcttacccaatccagtcttcctattggcaggtggt 591
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1087 cctgcaacaaacagattccgtccaggcttacccaatccagtcttcctgttggcaggtggt 1028

                 
Query: 592  gacca 596
            |||||
Sbjct: 1027 gacca 1023



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 625 ggaggtgatctgtgccttggtgaatgccttcttggagatc 664
           |||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 988 ggagatgatctgcgccgtggtgaatgccttcttggagatc 949
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>gb|AC157659.2| Mus musculus BAC clone RP23-275J9 from chromosome 6, complete sequence
          Length = 210200

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 205    taattaatagtttatgttatactg 228
              ||||||||||||||||||||||||
Sbjct: 198980 taattaatagtttatgttatactg 198957
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>gb|AC174446.2| Mus musculus BAC clone RP23-356N23 from chromosome 6, complete sequence
          Length = 193034

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 205    taattaatagtttatgttatactg 228
              ||||||||||||||||||||||||
Sbjct: 113221 taattaatagtttatgttatactg 113244
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>gb|AC156572.3| Mus musculus BAC clone RP23-216C6 from chromosome 13, complete sequence
          Length = 208578

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    tggcatatcatcttattcttc 107
             |||||||||||||||||||||
Sbjct: 35511 tggcatatcatcttattcttc 35531
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>gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 246705

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 337   atgatcctaccattccactctgtct 361
             |||||||||| ||||||||||||||
Sbjct: 42750 atgatcctacaattccactctgtct 42774
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>gb|AC146607.2| Mus musculus BAC clone RP23-209N19 from chromosome 3, complete sequence
          Length = 173758

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   cacatgtaatgataattaata 213
             |||||||||||||||||||||
Sbjct: 36227 cacatgtaatgataattaata 36247
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>emb|AL035468.3|HS424E5 Human DNA sequence from clone RP3-424E5 on chromosome 6q13-14.3,
             complete sequence
          Length = 93805

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 185   aactttgccacatgtaatgataattaata 213
             |||||||||||||||| | ||||||||||
Sbjct: 87486 aactttgccacatgtattaataattaata 87458
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>emb|AJ243024.1|MMU243024 Mus musculus partial FBPase 2 gene for Fructose-1,6-bisphosphatase,
           intron 4 and exon 5
          Length = 388

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tggcatatcatcttattcttc 107
           |||||||||||||||||||||
Sbjct: 124 tggcatatcatcttattcttc 144
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>gb|AC007879.4| Homo sapiens BAC clone RP11-309L6 from 2, complete sequence
          Length = 158841

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   ttagcaaatttcttctccaac 504
             |||||||||||||||||||||
Sbjct: 75903 ttagcaaatttcttctccaac 75923
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>gb|AC012446.4| Homo sapiens BAC clone RP11-101A12 from 2, complete sequence
          Length = 172749

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 320   tggacttctccacaagaatgatcctacca 348
             |||| |||||||||| |||||||||||||
Sbjct: 47537 tggaattctccacaacaatgatcctacca 47565
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>gb|AC091888.3| Homo sapiens chromosome 5 clone RP11-11K15, complete sequence
          Length = 151453

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 484   ttagcaaatttcttctccaactctc 508
             |||| ||||||||||||||||||||
Sbjct: 13884 ttaggaaatttcttctccaactctc 13908
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>gb|AY961519.1| Lysiphlebus testaceipes ribosomal protein L3 (RpL3) mRNA, complete
           cds
          Length = 1239

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 637 tgccttggtgaatgccttctt 657
           |||||||||||||||||||||
Sbjct: 399 tgccttggtgaatgccttctt 379
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>gb|AF032898.1|AF032898 Rattus norvegicus histone H2A and histone H2B genes, partial cds,
           and promoter region
          Length = 481

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 633 tctgtgccttggtgaatgccttcttggag 661
           |||| |||||||||| |||||||||||||
Sbjct: 464 tctgcgccttggtgactgccttcttggag 436
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>gb|BC079458.1| Rattus norvegicus histone 1, H2bh, mRNA (cDNA clone IMAGE:7121683)
          Length = 737

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 633 tctgtgccttggtgaatgccttcttggag 661
           |||| |||||||||| |||||||||||||
Sbjct: 75  tctgcgccttggtgactgccttcttggag 47
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>gb|AC171004.2| Mus musculus BAC clone RP23-67N16 from chromosome 13, complete sequence
          Length = 213660

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     tggcatatcatcttattcttc 107
              |||||||||||||||||||||
Sbjct: 157964 tggcatatcatcttattcttc 157984
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>emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chromosome 2, complete
            sequence
          Length = 167375

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 193  cacatgtaatgataattaata 213
            |||||||||||||||||||||
Sbjct: 3244 cacatgtaatgataattaata 3224
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>gb|BT011339.1| Drosophila melanogaster RH62603 full insert cDNA
          Length = 1396

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 638 gccttggtgaatgccttctt 657
           ||||||||||||||||||||
Sbjct: 432 gccttggtgaatgccttctt 413
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>ref|XM_765871.1| Giardia lamblia ATCC 50803 ATP dependent DNA helicase
            (GLP_29_20689_22803) partial mRNA
          Length = 2115

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  tttgccacatgtaatgataa 207
            ||||||||||||||||||||
Sbjct: 1565 tttgccacatgtaatgataa 1546
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>gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete sequence
          Length = 113964

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   tggtgaccaacatcttttag 607
             ||||||||||||||||||||
Sbjct: 90319 tggtgaccaacatcttttag 90338
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>emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on chromosome 13 Contains a
             ubiquitin pseudogene, complete sequence
          Length = 105783

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   catgtaatgataattaatag 214
             ||||||||||||||||||||
Sbjct: 33323 catgtaatgataattaatag 33342
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>emb|AL133341.12| Human DNA sequence from clone RP3-342O24 on chromosome 20 Contains ESTs
             and GSSs, complete sequence
          Length = 35033

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 579   attggcaggtggtgaccaacatct 602
             ||||||||||||||||| ||||||
Sbjct: 27306 attggcaggtggtgacccacatct 27283
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>ref|NM_169380.1| Drosophila melanogaster Ribosomal protein L3 CG4863-RC, transcript
           variant C (RpL3), mRNA
          Length = 730

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 638 gccttggtgaatgccttctt 657
           ||||||||||||||||||||
Sbjct: 708 gccttggtgaatgccttctt 689
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>ref|NM_169379.1| Drosophila melanogaster Ribosomal protein L3 CG4863-RE, transcript
           variant E (RpL3), mRNA
          Length = 1829

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 638 gccttggtgaatgccttctt 657
           ||||||||||||||||||||
Sbjct: 651 gccttggtgaatgccttctt 632
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>ref|NM_169378.1| Drosophila melanogaster Ribosomal protein L3 CG4863-RB, transcript
           variant B (RpL3), mRNA
          Length = 1579

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 638 gccttggtgaatgccttctt 657
           ||||||||||||||||||||
Sbjct: 401 gccttggtgaatgccttctt 382
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>ref|NM_079592.2| Drosophila melanogaster Ribosomal protein L3 CG4863-RA, transcript
           variant A (RpL3), mRNA
          Length = 1610

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 638 gccttggtgaatgccttctt 657
           ||||||||||||||||||||
Sbjct: 432 gccttggtgaatgccttctt 413
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>gb|AC093864.3| Homo sapiens BAC clone RP11-557J10 from 4, complete sequence
          Length = 128335

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 605   taggagaatgctgccttgct 624
             ||||||||||||||||||||
Sbjct: 78567 taggagaatgctgccttgct 78586
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>gb|AC006491.24|AC006491 Drosophila melanogaster, chromosome 3R, region 86D1-86E1, BAC clone
              BACR48M21, complete sequence
          Length = 164386

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 638    gccttggtgaatgccttctt 657
              ||||||||||||||||||||
Sbjct: 111913 gccttggtgaatgccttctt 111894
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>emb|BX000428.10| Mouse DNA sequence from clone RP23-474G7 on chromosome X, complete
             sequence
          Length = 162246

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   ctccacaagaatgatcctac 346
             ||||||||||||||||||||
Sbjct: 84121 ctccacaagaatgatcctac 84140
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>emb|BX649503.3| Zebrafish DNA sequence from clone DKEYP-90A8 in linkage group 4, complete
              sequence
          Length = 189355

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     atattacaatgtgtaccgct 42
              ||||||||||||||||||||
Sbjct: 136989 atattacaatgtgtaccgct 136970
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>gb|AE003690.3| Drosophila melanogaster chromosome 3R, section 28 of 118 of the complete
              sequence
          Length = 170298

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 638    gccttggtgaatgccttctt 657
              ||||||||||||||||||||
Sbjct: 137138 gccttggtgaatgccttctt 137119
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>gb|AF016835.1|AF016835 Drosophila melanogaster ribosomal protein L3 (RpL3) mRNA, complete
           cds
          Length = 1381

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 638 gccttggtgaatgccttctt 657
           ||||||||||||||||||||
Sbjct: 431 gccttggtgaatgccttctt 412


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,876,734
Number of Sequences: 3902068
Number of extensions: 5876734
Number of successful extensions: 102455
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102341
Number of HSP's gapped (non-prelim): 107
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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