ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal27h16 |
|---|---|
| Clone Library Name | barley_pub |
>DICER_ARATH (Q9SP32) Endoribonuclease Dicer homolog (EC 3.1.26.-) (CARPEL FACTORY| protein) (SHORT INTEGUMENTS 1 protein) (SUSPENSOR1 protein) Length = 1909 Score = 55.5 bits (132), Expect = 2e-07 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 13/169 (7%) Frame = -2 Query: 745 LHELCQKHGKDIKFKSWQKXXXXXXXXXXXXXXXXXGSSEQMGIAKLNATRDALSKLHGG 566 L E CQ+ + +++K+ + + Q +A+ A R+AL+ L Sbjct: 1738 LQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEK 1797 Query: 565 GNQQXXXXXXXXXXXXXXXXLRE-----------CKKKLIDQCNRKLWPKPIFKLEKEDG 419 + E ++ L D C RK WP P ++ KE G Sbjct: 1798 EIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGG 1857 Query: 418 PAHDRTFVYSVQVETQGGIWL--TLGDRMSRVKDAENSGAQKMLEHLLK 278 PAH + F + V+V T W +G+ M VK A++S A +LE L K Sbjct: 1858 PAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNK 1906
>DCL4_ARATH (P84634) Dicer-like protein 4 (EC 3.1.26.-)| Length = 1589 Score = 38.1 bits (87), Expect = 0.029 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTL---GDRMSR 332 + K L + C W P F+ +E+GP H ++FVY V +E + +TL G+ + Sbjct: 1507 KTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARAT 1566 Query: 331 VKDAENSGAQ 302 K A AQ Sbjct: 1567 KKGAAEHAAQ 1576
>RNC_WOLTR (Q5GTI3) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 243 Score = 36.6 bits (83), Expect = 0.085 Identities = 21/70 (30%), Positives = 33/70 (47%) Frame = -2 Query: 493 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAEN 314 K L + + P P ++L K+ GPAH F S+ +E G ++ + K AE Sbjct: 171 KTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACASSK----KVAEQ 226 Query: 313 SGAQKMLEHL 284 A+ MLE + Sbjct: 227 KAAELMLEKI 236
>RNC_TREDE (Q73NX5) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 246 Score = 36.6 bits (83), Expect = 0.085 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = -2 Query: 493 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAEN 314 K L + +K P ++L+K GP HDRTF +SV + G ++ L + K+AE Sbjct: 173 KSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSI--NGKVYGPLSGKTK--KEAEQ 228 Query: 313 SGAQKMLEHL 284 S A+ E+L Sbjct: 229 SVAKVAYENL 238
>RNC_ANAMM (Q5P9U8) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 232 Score = 36.2 bits (82), Expect = 0.11 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = -2 Query: 457 WPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHLLK 278 W P++KL + GP H F V ++ G + LG S+ K AE A+ ML+ + + Sbjct: 175 WAMPLYKLVSKSGPEHKPVFAVEVSIQEHGNV---LGTGSSK-KLAEQEAAKLMLKKITE 230 Query: 277 L 275 L Sbjct: 231 L 231
>RNC_WOLPM (Q73FT3) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 232 Score = 35.8 bits (81), Expect = 0.15 Identities = 23/72 (31%), Positives = 34/72 (47%) Frame = -2 Query: 493 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAEN 314 K L + + P P ++L K+ GPAH+ F SV +E G + + K AE Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSACASSK----KIAEQ 216 Query: 313 SGAQKMLEHLLK 278 A+ MLE + K Sbjct: 217 KAAELMLEKIGK 228
>RNC_LEPIN (Q8EXX3) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 247 Score = 35.4 bits (80), Expect = 0.19 Identities = 21/75 (28%), Positives = 38/75 (50%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 R+ K +L + + PI++ + E GP H +TF V++ Q W G +S+ K Sbjct: 175 RDYKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQ---WEASGSGVSK-KS 230 Query: 322 AENSGAQKMLEHLLK 278 AE + A+++ + K Sbjct: 231 AEQNAAKELYNRIRK 245
>RNC_LEPIC (Q75FW5) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 247 Score = 35.4 bits (80), Expect = 0.19 Identities = 21/75 (28%), Positives = 38/75 (50%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 R+ K +L + + PI++ + E GP H +TF V++ Q W G +S+ K Sbjct: 175 RDYKTQLQEYSQKHFKILPIYRTKSESGPDHAKTFQVVVRIRDQ---WEASGSGVSK-KS 230 Query: 322 AENSGAQKMLEHLLK 278 AE + A+++ + K Sbjct: 231 AEQNAAKELYNRIRK 245
>RNC_CHLTE (Q8KAN7) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 272 Score = 35.0 bits (79), Expect = 0.25 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = -2 Query: 493 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLG-DRMSRVKDAE 317 K +LI+ + P P++ + E+G H++TFV V Q LG R KDAE Sbjct: 191 KSRLIEYTQSRQLPPPLYTVITEEGAEHEKTFVVEVSCNGQ-----PLGRGTAPRKKDAE 245 Query: 316 NSGAQKMLEHL 284 A++ ++ L Sbjct: 246 QLAAKEAMKRL 256
>RNC_ENTFA (Q82ZG1) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 230 Score = 34.3 bits (77), Expect = 0.42 Identities = 21/53 (39%), Positives = 31/53 (58%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 284 ++L KE+GPAHDRTF V + G + LG S+ K AE A++ L+ + Sbjct: 180 YRLIKEEGPAHDRTFFTEVYM---NGELIGLGQGKSK-KLAEQDAAERALKSI 228
>RNC_RICFE (Q4UKA8) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 225 Score = 33.5 bits (75), Expect = 0.72 Identities = 20/55 (36%), Positives = 32/55 (58%) Frame = -2 Query: 448 PIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 284 PI++L K +G AH TF V+V+ + +G S +K+AE + A+K+L L Sbjct: 175 PIYRLIKREGAAHSSTFTVLVKVKD----YKQIGTGHS-IKEAEKNAARKLLHKL 224
>RNC_RHIME (Q92R47) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 238 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/71 (30%), Positives = 35/71 (49%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 R+ K +L + + K P ++ + GP HD F +V+V+ GI G S+ + Sbjct: 160 RDAKTELQEWAHAKFGVAPKYRTDDRSGPDHDPRFTVTVEVD---GIAPETGVDRSK-RG 215 Query: 322 AENSGAQKMLE 290 AE A K+LE Sbjct: 216 AEQVAAMKLLE 226
>RNC_BORGA (Q660G7) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 245 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 ++ K L + +K P +KL+KE GP HD+ F + V G +++ G S+ K+ Sbjct: 172 KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV---GEKFISNGKGKSK-KE 227 Query: 322 AENSGAQKMLE 290 AE A+ L+ Sbjct: 228 AEMRAAEVALK 238
>RNC_BLOFL (Q7VRR0) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 232 Score = 32.3 bits (72), Expect = 1.6 Identities = 19/76 (25%), Positives = 39/76 (51%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 ++ K +L + P PI+ + + G AHD+ F+ + QV + + ++ R S + Sbjct: 157 KDPKTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSS---LKYSVMGRGSSRRK 213 Query: 322 AENSGAQKMLEHLLKL 275 AE A+ L+ L+++ Sbjct: 214 AEQDAAENALKFLIEI 229
>RNC_BORBU (O51648) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 246 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 ++ K L + +K P +KL+KE GP HD+ F + V G +++ G S+ K+ Sbjct: 173 KDYKSLLQEYVQKKYKISPSYKLDKEIGPDHDKVFCVELYV---GENFISNGKGKSK-KE 228 Query: 322 AENSGAQKMLE 290 AE A+ L+ Sbjct: 229 AEMRAAEVALK 239
>RNC_BDEBA (Q6MLR5) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 234 Score = 32.3 bits (72), Expect = 1.6 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 R+ K +L + + P +++ E+GP HDR F+ V+V+ +W R K+ Sbjct: 161 RDYKTRLQELVQKSSKETPRYEVLAEEGPPHDREFLVCVKVKED--VWAQ--GRGRSKKN 216 Query: 322 AENSGAQKMLE 290 AE A+ LE Sbjct: 217 AEQMAAKNALE 227
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 32.0 bits (71), Expect = 2.1 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -2 Query: 484 LIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSV 386 L++ CN++ W P F L + GP H + F++ V Sbjct: 2376 LMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRV 2408
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 32.0 bits (71), Expect = 2.1 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -2 Query: 484 LIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSV 386 L++ CN++ W P F L + GP H + F++ V Sbjct: 2354 LMEICNKRRWQPPEFLLVHDSGPDHRKHFLFRV 2386
>RNC_PELLD (Q3B6L3) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 276 Score = 32.0 bits (71), Expect = 2.1 Identities = 20/67 (29%), Positives = 32/67 (47%) Frame = -2 Query: 493 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAEN 314 K +LI+ P P++ + E+G H++TF V G L G + R KDAE Sbjct: 190 KSRLIEHTQSHQLPPPVYTVLSEEGAEHEKTFTIEVSC---NGRRLGRGTAL-RKKDAEQ 245 Query: 313 SGAQKML 293 A++ + Sbjct: 246 LAAEEAM 252
>RNC_THETN (Q8R9W3) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 228 Score = 32.0 bits (71), Expect = 2.1 Identities = 22/73 (30%), Positives = 39/73 (53%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 R+ K +L + K ++L +E GP H++TFV V++ G + L +G S+ K+ Sbjct: 156 RDYKTRLQEVVQSMEVGKITYELVEEIGPDHNKTFVTQVKI---GDVVLGIGQGKSK-KE 211 Query: 322 AENSGAQKMLEHL 284 +E + A + L L Sbjct: 212 SEQAAAMEALSKL 224
>RNC_BACLD (Q65JQ5) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 249 Score = 31.6 bits (70), Expect = 2.7 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHLLK 278 +K+ +E GPAH+R F +V ++ G L +G S+ K+AE AQ+ L L K Sbjct: 194 YKILQEKGPAHNREFEANVSLK---GEVLGVGSGRSK-KEAEQHAAQEALAKLQK 244
>RNC_LACLA (Q9CHD0) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 231 Score = 31.6 bits (70), Expect = 2.7 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSV-QVETQGGIWLTLGDRMSRVKDAENS 311 +K+ KE+GPAHDR+FV +V + G L +++ K AEN+ Sbjct: 179 YKILKEEGPAHDRSFVAAVFNNGKELGRGLGKSKKVAEQKAAENA 223
>ADAM8_HUMAN (P78325) ADAM 8 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 8) (Cell surface antigen MS2) (CD156a antigen) (CD156) Length = 824 Score = 31.6 bits (70), Expect = 2.7 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -1 Query: 725 TWEGYKIQELAEGWNNGCKCICWWGTCWDRLLRADGNR*AQCH 597 T +G + + EG G + +CW G C D + N AQCH Sbjct: 576 TEDGTAYEPVPEGTRCGPEKVCWKGRCQDLHVYRSSNCSAQCH 618
>TRBP2_MOUSE (P97473) TAR RNA-binding protein 2 (Protamine-1 RNA-binding| protein) (PRM-1 RNA-binding protein) Length = 365 Score = 31.2 bits (69), Expect = 3.6 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -2 Query: 466 RKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKML 293 +K W P + + +E GPAH + F + +VE ++ +G S+ K A+ + A KML Sbjct: 169 QKGWRLPEYMVTQESGPAHRKEFTMTCRVER----FIEIGSGTSK-KLAKRNAAAKML 221 Score = 30.0 bits (66), Expect = 8.0 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = -2 Query: 484 LIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGA 305 L+ + ++ P++ L KE+G AH F + V V G G S+ K A++ A Sbjct: 34 LLQEYGTRIGKTPVYDLLKEEGQAHQPNFTFRVTV----GDTSCTGTGPSK-KAAKHKAA 88 Query: 304 QKMLEHL 284 + L+HL Sbjct: 89 EVALKHL 95
>RNC_BACSU (P51833) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 249 Score = 31.2 bits (69), Expect = 3.6 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHLLK 278 +K+ E GPAH+R F V ++ G L +G+ S+ K+AE AQ+ L L K Sbjct: 194 YKISNEKGPAHNREFEAIVSLK---GEPLGVGNGRSK-KEAEQHAAQEALAKLQK 244
>TRBP2_HUMAN (Q15633) TAR RNA-binding protein 2 (Trans-activation-responsive| RNA-binding protein) Length = 366 Score = 31.2 bits (69), Expect = 3.6 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -2 Query: 466 RKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKML 293 +K W P + + +E GPAH + F + +VE ++ +G S+ K A+ + A KML Sbjct: 170 QKGWRLPEYTVTQESGPAHRKEFTMTCRVER----FIEIGSGTSK-KLAKRNAAAKML 222
>STAU2_BRARE (Q7ZW47) Double-stranded RNA-binding protein Staufen homolog 2| Length = 606 Score = 31.2 bits (69), Expect = 3.6 Identities = 19/53 (35%), Positives = 31/53 (58%) Frame = -2 Query: 451 KPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKML 293 +P +KL E GPAH + +++VQ+ +W + G S +K A++S A K L Sbjct: 23 QPQYKLLNEKGPAHAK--IFTVQLCLGNQVWESEG---SSIKKAQHSTATKAL 70
>DSRAD_RAT (P55266) Double-stranded RNA-specific adenosine deaminase (EC| 3.5.4.-) (DRADA) Length = 1175 Score = 30.8 bits (68), Expect = 4.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 475 QCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQ 371 +C KL F+L ++GPAHD F Y V V Q Sbjct: 571 ECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQ 605
>RNC_RHILO (Q985A6) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 221 Score = 30.8 bits (68), Expect = 4.7 Identities = 19/70 (27%), Positives = 35/70 (50%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 R+ K +L + ++ P ++++ +GP HD F SV+V G G S+ ++ Sbjct: 147 RDAKTELQEWAHQAASAVPAYQIDSREGPDHDPLFTVSVRV---GAFQPATGSGRSK-RE 202 Query: 322 AENSGAQKML 293 AE + A +L Sbjct: 203 AEQAAAAALL 212
>STAU2_RAT (Q68SB1) Double-stranded RNA-binding protein Staufen homolog 2| (r-staufen protein) Length = 571 Score = 30.8 bits (68), Expect = 4.7 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = -2 Query: 451 KPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKML 293 +P +KL E GPAH + F SVQ+ W + G S +K A+ + A K L Sbjct: 23 QPQYKLLNESGPAHSKMF--SVQLSLGEQTWESEG---SSIKKAQQAVANKAL 70
>STAU2_MOUSE (Q8CJ67) Double-stranded RNA-binding protein Staufen homolog 2| Length = 570 Score = 30.8 bits (68), Expect = 4.7 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = -2 Query: 451 KPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKML 293 +P +KL E GPAH + F SVQ+ W + G S +K A+ + A K L Sbjct: 23 QPQYKLLNESGPAHSKMF--SVQLSLGEQTWESEG---SSIKKAQQAVANKAL 70
>RNC_BACHK (Q6HEW6) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 245 Score = 30.8 bits (68), Expect = 4.7 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 284 +++ +E GPAH+R FV V T + L LG S+ K+AE A + L+ L Sbjct: 193 YQILQEKGPAHNREFVSRV---TLNNVALGLGSGKSK-KEAEQQAAAEALKKL 241
>RNC_BACCZ (Q636H7) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 245 Score = 30.8 bits (68), Expect = 4.7 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 284 +++ +E GPAH+R FV V T + L LG S+ K+AE A + L+ L Sbjct: 193 YQILQEKGPAHNREFVSRV---TLNNVALGLGSGKSK-KEAEQQAAAEALKKL 241
>RNC_BACCR (Q819V8) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 245 Score = 30.8 bits (68), Expect = 4.7 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 284 +++ +E GPAH+R FV V T + L LG S+ K+AE A + L+ L Sbjct: 193 YQILQEKGPAHNREFVSRV---TLNNVALGLGSGKSK-KEAEQQAAAEALKKL 241
>RNC_BACC1 (Q732M1) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 245 Score = 30.8 bits (68), Expect = 4.7 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 284 +++ +E GPAH+R FV V T + L LG S+ K+AE A + L+ L Sbjct: 193 YQILQEKGPAHNREFVSRV---TLNNVALGLGSGKSK-KEAEQQAAAEALKKL 241
>RNC_BACAN (Q81WI8) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 245 Score = 30.8 bits (68), Expect = 4.7 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 284 +++ +E GPAH+R FV V T + L LG S+ K+AE A + L+ L Sbjct: 193 YQILQEKGPAHNREFVSRV---TLNNVALGLGSGKSK-KEAEQQAAAEALKKL 241
>DSRAD_MOUSE (Q99MU3) Double-stranded RNA-specific adenosine deaminase (EC| 3.5.4.-) (DRADA) (RNA adenosine deaminase 1) Length = 1178 Score = 30.8 bits (68), Expect = 4.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 475 QCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQ 371 +C KL F+L ++GPAHD F Y V V Q Sbjct: 574 ECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQ 608
>RNC_PARUW (Q6MEK1) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 242 Score = 30.4 bits (67), Expect = 6.1 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVE 377 R K L D C + P++++ E GP H + F SV ++ Sbjct: 171 RNWKALLQDYCQKNYQQTPLYQVLHESGPDHSKVFQISVWIQ 212
>RNC_ONYPE (Q6YPW7) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 238 Score = 30.4 bits (67), Expect = 6.1 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHLLK 278 +K+ +E GPAH + FV V +E L G+ ++ K AE AQ+ L + K Sbjct: 172 YKIVQEQGPAHSKNFVAEVYLEKN---LLGTGEGSTK-KAAEQKAAQQALSKVAK 222
>RNC_AGRT5 (Q8UGK2) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 239 Score = 30.4 bits (67), Expect = 6.1 Identities = 18/71 (25%), Positives = 36/71 (50%) Frame = -2 Query: 502 RECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKD 323 R+ K +L + + + P ++++ GP HD +F +V++ G+ G S+ + Sbjct: 161 RDAKTELQEWAHARFAATPAYRVDDRSGPDHDPSFTVTVEIP---GVKPETGVERSK-RA 216 Query: 322 AENSGAQKMLE 290 AE A ++LE Sbjct: 217 AEQVAATRLLE 227
>STAU2_HUMAN (Q9NUL3) Double-stranded RNA-binding protein Staufen homolog 2| Length = 570 Score = 30.4 bits (67), Expect = 6.1 Identities = 22/64 (34%), Positives = 33/64 (51%) Frame = -2 Query: 484 LIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGA 305 L+++ R +P +KL E GPAH + F SVQ+ W + G S +K A+ + A Sbjct: 12 LVNELARFNRVQPQYKLLNERGPAHSKMF--SVQLSLGEQTWESEG---SSIKKAQQAVA 66 Query: 304 QKML 293 K L Sbjct: 67 NKAL 70
>RNC_PELCD (Q3A4Q8) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 232 Score = 30.4 bits (67), Expect = 6.1 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = -2 Query: 493 KKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSR-VKDAE 317 K +L ++ + P + L DGP H R+ YSV+ +G +G R K AE Sbjct: 165 KTRLQERLQARFGDVPQYVLIHADGPPHQRS--YSVEAHFRGS---CIGQGQGRSKKSAE 219 Query: 316 NSGAQKMLEHL 284 + A++ LE+L Sbjct: 220 QAAAKQALEYL 230
>RNC_DESPS (Q6ANV0) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 241 Score = 30.0 bits (66), Expect = 8.0 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = -2 Query: 499 ECKKKLIDQCNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDA 320 + K +L + K P ++L+ E+GP+H + F SV + L G+ S+ K+A Sbjct: 171 DAKSRLQEILQEKHNEGPSYRLDNEEGPSHKKRFTISVLFRDE---VLGTGEAGSK-KEA 226 Query: 319 ENSGA 305 E GA Sbjct: 227 EQRGA 231
>RNC_BACSK (Q5WFM6) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 260 Score = 30.0 bits (66), Expect = 8.0 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 442 FKLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSR-VKDAENSGAQKML 293 + + +E GPAHDR FV VQ+ + T+G R K+AE A++ L Sbjct: 207 YLIVQERGPAHDREFVSDVQLNEE-----TIGTGTGRSKKEAEQLAAKQAL 252
>RNC_RHOBA (Q7UGZ7) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 266 Score = 30.0 bits (66), Expect = 8.0 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Frame = -2 Query: 490 KKLIDQ-CNRKLWPKPIFKLEKEDGPAHDRTFVYSVQVETQ--GGIWLTLGDRMSRVKDA 320 K ++ Q R+L P++KL +E GP H + F+ V+ + W + KDA Sbjct: 187 KSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRFAPAW------GNNKKDA 240 Query: 319 ENSGAQKMLEHLLKL*DPY 263 E A L L PY Sbjct: 241 EQRAAANALAELHNAKVPY 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,040,281 Number of Sequences: 219361 Number of extensions: 2170255 Number of successful extensions: 4980 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 4848 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4980 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 7902193040 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
