ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal27h16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06, complete sequence Length = 71193 Score = 113 bits (57), Expect = 9e-22 Identities = 248/311 (79%), Gaps = 3/311 (0%) Strand = Plus / Minus Query: 436 acttgaagatgggttttggccaaagcttcctgttgcactgatcaataagcttcttcttgc 495 |||| ||||| |||||||||||| || |||| |||| || ||| ||||||||| |||| Sbjct: 64554 acttaaagataggttttggccaattctgcctgctgcattgctcattaagcttctgtttgc 64495 Query: 496 attccctaagctctccaacctcaacccccaatccatggccaactccagttgtcaacactt 555 | |||||||||||||||| |||| |||||||||| | |||||| |||||||| ||||||| Sbjct: 64494 actccctaagctctccaatctcatcccccaatccgttgccaaccccagttgttaacactt 64435 Query: 556 gctgattccctccaccatgaagcttgcttaatgcatcccgtgtggcattgagcttagcga 615 || ||| | |||| |||||| ||| ||||||||||| ||||| |||||||| | Sbjct: 64434 gc---ttctttgcacctgcaagcttccttgttgcatcccgtgcagcattaagcttagcaa 64378 Query: 616 ttcccatctgctctgaggagcctgtcccaacaagtaccccaccaacaaatacatttacaa 675 || || ||||||| ||||| || | ||||| || ||||| ||||||||||||| || | Sbjct: 64377 ttaccttctgctccgaggaaccaataccaactagctccccagcaacaaatacattgacca 64318 Query: 676 ccgttgttccacccttctgccaactcttgaattttatatccttcccatgtttctggcaca 735 | || | ||||| || ||||| ||||||||| | |||||| ||||||||||| | Sbjct: 64317 ctgtcatcccacctttttgccatgtcttgaattgtgccatcttcccgtgtttctggcata 64258 Query: 736 gttcatgcaac 746 ||||||||||| Sbjct: 64257 gttcatgcaac 64247
>ref|XM_476255.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 113 bits (57), Expect = 9e-22 Identities = 248/311 (79%), Gaps = 3/311 (0%) Strand = Plus / Minus Query: 436 acttgaagatgggttttggccaaagcttcctgttgcactgatcaataagcttcttcttgc 495 |||| ||||| |||||||||||| || |||| |||| || ||| ||||||||| |||| Sbjct: 1051 acttaaagataggttttggccaattctgcctgctgcattgctcattaagcttctgtttgc 992 Query: 496 attccctaagctctccaacctcaacccccaatccatggccaactccagttgtcaacactt 555 | |||||||||||||||| |||| |||||||||| | |||||| |||||||| ||||||| Sbjct: 991 actccctaagctctccaatctcatcccccaatccgttgccaaccccagttgttaacactt 932 Query: 556 gctgattccctccaccatgaagcttgcttaatgcatcccgtgtggcattgagcttagcga 615 || ||| | |||| |||||| ||| ||||||||||| ||||| |||||||| | Sbjct: 931 gc---ttctttgcacctgcaagcttccttgttgcatcccgtgcagcattaagcttagcaa 875 Query: 616 ttcccatctgctctgaggagcctgtcccaacaagtaccccaccaacaaatacatttacaa 675 || || ||||||| ||||| || | ||||| || ||||| ||||||||||||| || | Sbjct: 874 ttaccttctgctccgaggaaccaataccaactagctccccagcaacaaatacattgacca 815 Query: 676 ccgttgttccacccttctgccaactcttgaattttatatccttcccatgtttctggcaca 735 | || | ||||| || ||||| ||||||||| | |||||| ||||||||||| | Sbjct: 814 ctgtcatcccacctttttgccatgtcttgaattgtgccatcttcccgtgtttctggcata 755 Query: 736 gttcatgcaac 746 ||||||||||| Sbjct: 754 gttcatgcaac 744
>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBb0061M13, complete sequence Length = 174910 Score = 113 bits (57), Expect = 9e-22 Identities = 248/311 (79%), Gaps = 3/311 (0%) Strand = Plus / Minus Query: 436 acttgaagatgggttttggccaaagcttcctgttgcactgatcaataagcttcttcttgc 495 |||| ||||| |||||||||||| || |||| |||| || ||| ||||||||| |||| Sbjct: 16828 acttaaagataggttttggccaattctgcctgctgcattgctcattaagcttctgtttgc 16769 Query: 496 attccctaagctctccaacctcaacccccaatccatggccaactccagttgtcaacactt 555 | |||||||||||||||| |||| |||||||||| | |||||| |||||||| ||||||| Sbjct: 16768 actccctaagctctccaatctcatcccccaatccgttgccaaccccagttgttaacactt 16709 Query: 556 gctgattccctccaccatgaagcttgcttaatgcatcccgtgtggcattgagcttagcga 615 || ||| | |||| |||||| ||| ||||||||||| ||||| |||||||| | Sbjct: 16708 gc---ttctttgcacctgcaagcttccttgttgcatcccgtgcagcattaagcttagcaa 16652 Query: 616 ttcccatctgctctgaggagcctgtcccaacaagtaccccaccaacaaatacatttacaa 675 || || ||||||| ||||| || | ||||| || ||||| ||||||||||||| || | Sbjct: 16651 ttaccttctgctccgaggaaccaataccaactagctccccagcaacaaatacattgacca 16592 Query: 676 ccgttgttccacccttctgccaactcttgaattttatatccttcccatgtttctggcaca 735 | || | ||||| || ||||| ||||||||| | |||||| ||||||||||| | Sbjct: 16591 ctgtcatcccacctttttgccatgtcttgaattgtgccatcttcccgtgtttctggcata 16532 Query: 736 gttcatgcaac 746 ||||||||||| Sbjct: 16531 gttcatgcaac 16521 Score = 61.9 bits (31), Expect = 3e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 375 gtttctacctgaacggagtaaacaaatgtcctatcatgtgccgggccgtcttccttctct 434 |||||||||||||| ||| |||| || |||| |||||||| ||||| |||||||||||| Sbjct: 24266 gtttctacctgaacagagcaaacgaacttcctttcatgtgcagggccatcttccttctct 24207 Query: 435 aac 437 ||| Sbjct: 24206 aac 24204
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 9e-22 Identities = 248/311 (79%), Gaps = 3/311 (0%) Strand = Plus / Minus Query: 436 acttgaagatgggttttggccaaagcttcctgttgcactgatcaataagcttcttcttgc 495 |||| ||||| |||||||||||| || |||| |||| || ||| ||||||||| |||| Sbjct: 10847624 acttaaagataggttttggccaattctgcctgctgcattgctcattaagcttctgtttgc 10847565 Query: 496 attccctaagctctccaacctcaacccccaatccatggccaactccagttgtcaacactt 555 | |||||||||||||||| |||| |||||||||| | |||||| |||||||| ||||||| Sbjct: 10847564 actccctaagctctccaatctcatcccccaatccgttgccaaccccagttgttaacactt 10847505 Query: 556 gctgattccctccaccatgaagcttgcttaatgcatcccgtgtggcattgagcttagcga 615 || ||| | |||| |||||| ||| ||||||||||| ||||| |||||||| | Sbjct: 10847504 gc---ttctttgcacctgcaagcttccttgttgcatcccgtgcagcattaagcttagcaa 10847448 Query: 616 ttcccatctgctctgaggagcctgtcccaacaagtaccccaccaacaaatacatttacaa 675 || || ||||||| ||||| || | ||||| || ||||| ||||||||||||| || | Sbjct: 10847447 ttaccttctgctccgaggaaccaataccaactagctccccagcaacaaatacattgacca 10847388 Query: 676 ccgttgttccacccttctgccaactcttgaattttatatccttcccatgtttctggcaca 735 | || | ||||| || ||||| ||||||||| | |||||| ||||||||||| | Sbjct: 10847387 ctgtcatcccacctttttgccatgtcttgaattgtgccatcttcccgtgtttctggcata 10847328 Query: 736 gttcatgcaac 746 ||||||||||| Sbjct: 10847327 gttcatgcaac 10847317 Score = 61.9 bits (31), Expect = 3e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 375 gtttctacctgaacggagtaaacaaatgtcctatcatgtgccgggccgtcttccttctct 434 |||||||||||||| ||| |||| || |||| |||||||| ||||| |||||||||||| Sbjct: 10855062 gtttctacctgaacagagcaaacgaacttcctttcatgtgcagggccatcttccttctct 10855003 Query: 435 aac 437 ||| Sbjct: 10855002 aac 10855000
>dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-49M9, complete sequences Length = 144308 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 636 cctgtcccaacaagtaccccacc 658 ||||||||||||||||||||||| Sbjct: 36252 cctgtcccaacaagtaccccacc 36274
>dbj|AP000798.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-43E2, complete sequences Length = 113054 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 636 cctgtcccaacaagtaccccacc 658 ||||||||||||||||||||||| Sbjct: 82736 cctgtcccaacaagtaccccacc 82758
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 286 gatgttccaacatcttctgcg 306 ||||||||||||||||||||| Sbjct: 2457719 gatgttccaacatcttctgcg 2457699
>gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete sequence Length = 117225 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 gtcacaaatgtacaactatag 163 ||||||||||||||||||||| Sbjct: 56041 gtcacaaatgtacaactatag 56061
>emb|AL356423.15| Human DNA sequence from clone RP11-295B17 on chromosome 13 Contains the 5' end of the STK24 gene for serine/threonine kinase 24, a novel gene, a novel pseudogene, a cytochrome c pseudogene, a calmodulin 2 (CALM2) pseudogene and a CpG island, complete sequence Length = 174041 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 ttcctgttgcactgatcaata 482 ||||||||||||||||||||| Sbjct: 137798 ttcctgttgcactgatcaata 137818
>emb|AL163537.11| Human DNA sequence from clone RP11-302C13 on chromosome 13 Contains part of the GPC5 gene for glypican 5 and a novel gene similar to fatty acid binding protein 5 (psoriasis-associated), complete sequence Length = 58262 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 gtcgcctcaccccttgcctga 79 ||||||||||||||||||||| Sbjct: 4013 gtcgcctcaccccttgcctga 4033
>ref|XM_964594.1| PREDICTED: Tribolium castaneum similar to CG12008-PA, isoform A (LOC658185), mRNA Length = 11763 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 ttttggccaaagcttcctgtt 469 ||||||||||||||||||||| Sbjct: 10756 ttttggccaaagcttcctgtt 10736
>gb|AC090016.11| Homo sapiens 12q BAC RP11-730K16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121817 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tgtcctctgtttattcctcat 30 ||||||||||||||||||||| Sbjct: 43436 tgtcctctgtttattcctcat 43416
>gb|AC138553.3| Ornithorhynchus anatinus clone OA_Bb-524H4, complete sequence Length = 144677 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 atgttctttccaaaggacaatatat 264 |||||||||||||| |||||||||| Sbjct: 114684 atgttctttccaaatgacaatatat 114660
>emb|AL831715.7| Mouse DNA sequence from clone RP23-48E15 on chromosome X, complete sequence Length = 163675 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 tagaaatatgttctttccaaa 253 ||||||||||||||||||||| Sbjct: 19812 tagaaatatgttctttccaaa 19792 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,097,540 Number of Sequences: 3902068 Number of extensions: 7097540 Number of successful extensions: 150649 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150539 Number of HSP's gapped (non-prelim): 110 length of query: 752 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 729 effective length of database: 17,143,297,704 effective search space: 12497464026216 effective search space used: 12497464026216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
