ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111770.1| Zea mays CL63033_1 mRNA sequence Length = 540 Score = 176 bits (89), Expect = 5e-41 Identities = 181/211 (85%), Gaps = 3/211 (1%) Strand = Plus / Minus Query: 275 gtcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccc 334 |||||||||| || || |||||||| || | ||||||||||||||| | |||||| ||| Sbjct: 242 gtcatgtctcaaagatgcccttcacatagaccatccccttctcgctgaacttgaggtcct 183 Query: 335 tcctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttcc 394 ||||||||||||| ||||| || || |||||| |||| || ||||||||||| ||||| Sbjct: 182 tcctcatctgctcaacctggacgtcatcgccctgcacaaggatctcggacac---gttcc 126 Query: 395 cgtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagt 454 |||||||||| | || |||||| ||||||||||| |||||||| |||||||| ||||||| Sbjct: 125 cgtcatcggataggatcatcttgaccttgatctcttctttccttgacgctttcgtccagt 66 Query: 455 agtacactcccgccaaggggcttaaggtcat 485 ||||| |||||||||||||||| | |||||| Sbjct: 65 agtacgctcccgccaaggggctcagggtcat 35
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 113 bits (57), Expect = 6e-22 Identities = 152/183 (83%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 276 tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 335 |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| | Sbjct: 8460 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 8401 Query: 336 cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 395 |||||||||||| || || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 8400 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 8344 Query: 396 gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 455 |||||| || || | ||| || ||||||||||| ||||| || || || ||||||||||| Sbjct: 8343 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 8284 Query: 456 gta 458 ||| Sbjct: 8283 gta 8281 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 465 cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 524 |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || || Sbjct: 8190 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 8131 Query: 525 tgacagaacaagcccgacgct 545 ||| |||||||| |||||||| Sbjct: 8130 tgatagaacaagaccgacgct 8110 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 aagccaagacacagatttgcccgt 160 ||||||||| |||||||||||||| Sbjct: 8581 aagccaagatacagatttgcccgt 8558
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 113 bits (57), Expect = 6e-22 Identities = 152/183 (83%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 276 tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 335 |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| | Sbjct: 18429145 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 18429086 Query: 336 cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 395 |||||||||||| || || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 18429085 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 18429029 Query: 396 gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 455 |||||| || || | ||| || ||||||||||| ||||| || || || ||||||||||| Sbjct: 18429028 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 18428969 Query: 456 gta 458 ||| Sbjct: 18428968 gta 18428966 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 465 cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 524 |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || || Sbjct: 18428875 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 18428816 Query: 525 tgacagaacaagcccgacgct 545 ||| |||||||| |||||||| Sbjct: 18428815 tgatagaacaagaccgacgct 18428795 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 aagccaagacacagatttgcccgt 160 ||||||||| |||||||||||||| Sbjct: 18429266 aagccaagatacagatttgcccgt 18429243
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 113 bits (57), Expect = 6e-22 Identities = 152/183 (83%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 276 tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 335 |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| | Sbjct: 18588546 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 18588487 Query: 336 cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 395 |||||||||||| || || ||||| || |||||||| ||||| ||||| ||| ||||| Sbjct: 18588486 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 18588430 Query: 396 gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 455 |||||| || || | ||| || ||||||||||| ||||| || || || ||||||||||| Sbjct: 18588429 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 18588370 Query: 456 gta 458 ||| Sbjct: 18588369 gta 18588367 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 465 cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 524 |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || || Sbjct: 18588276 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 18588217 Query: 525 tgacagaacaagcccgacgct 545 ||| |||||||| |||||||| Sbjct: 18588216 tgatagaacaagaccgacgct 18588196 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 aagccaagacacagatttgcccgt 160 ||||||||| |||||||||||||| Sbjct: 18588667 aagccaagatacagatttgcccgt 18588644
>ref|NM_113582.2| Arabidopsis thaliana unknown protein AT3G26710 mRNA, complete cds Length = 972 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 411 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 464 ||||||||| || |||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 690 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 637
>emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence Length = 81493 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 411 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 464 ||||||||| || |||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 66654 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 66601
>gb|AY140025.1| Arabidopsis thaliana expressed protein (At3g26710) mRNA, complete cds Length = 908 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 411 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 464 ||||||||| || |||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 691 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 638
>gb|BT006294.1| Arabidopsis thaliana At3g26710 mRNA, complete cds Length = 804 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 411 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 464 ||||||||| || |||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 666 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 613
>gb|AY087129.1| Arabidopsis thaliana clone 32010 mRNA, complete sequence Length = 918 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 411 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 464 ||||||||| || |||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 685 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 632
>dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLJ15 Length = 43481 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 411 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 464 ||||||||| || |||||||||||||||||||| ||| ||||||| |||||||| Sbjct: 24416 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 24363
>ref|NM_125885.2| Arabidopsis thaliana unknown protein AT5G64870 mRNA, complete cds Length = 1754 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 413 tcttcaccttgatctcctcttt 434 |||||||||||||||||||||| Sbjct: 764 tcttcaccttgatctcctcttt 743
>emb|BX830484.1|CNS0A1EH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZF09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1586 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 413 tcttcaccttgatctcctcttt 434 |||||||||||||||||||||| Sbjct: 742 tcttcaccttgatctcctcttt 721
>emb|BX830969.1|CNS0A0PW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS43ZD06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1673 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 413 tcttcaccttgatctcctcttt 434 |||||||||||||||||||||| Sbjct: 742 tcttcaccttgatctcctcttt 721
>gb|AY085257.1| Arabidopsis thaliana clone 142026 mRNA, complete sequence Length = 1753 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 413 tcttcaccttgatctcctcttt 434 |||||||||||||||||||||| Sbjct: 764 tcttcaccttgatctcctcttt 743
>dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXK3 Length = 81494 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 413 tcttcaccttgatctcctcttt 434 |||||||||||||||||||||| Sbjct: 27863 tcttcaccttgatctcctcttt 27884
>emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chromosome 2, complete sequence Length = 197839 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 132 tctcaaagccaagacacagatt 153 |||||||||||||||||||||| Sbjct: 187714 tctcaaagccaagacacagatt 187693
>ref|XM_750455.1| Aspergillus fumigatus Af293 papillary renal cell carcinoma-associated protein (Afu2g12160) partial mRNA Length = 1239 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 cttcaccttgatctcctctttcctc 438 ||||| ||||||||||||||||||| Sbjct: 564 cttcaacttgatctcctctttcctc 540
>gb|AC119810.8| Mus musculus chromosome 7, clone RP23-54G21, complete sequence Length = 185939 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cgaatatccccttcacgtata 304 ||||||||||||||||||||| Sbjct: 40474 cgaatatccccttcacgtata 40494
>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence Length = 120889 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 aaaaacatctctttttctcaa 137 ||||||||||||||||||||| Sbjct: 23995 aaaaacatctctttttctcaa 23975
>gb|AF031651.1|AF031651 Mus musculus VAV (vav) gene, promoter and partial cds Length = 1000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 acccaccctcaactcccctct 191 ||||||||||||||||||||| Sbjct: 23 acccaccctcaactcccctct 43
>emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete sequence Length = 177741 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 acccaccctcaactcccctct 191 ||||||||||||||||||||| Sbjct: 161446 acccaccctcaactcccctct 161466
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 aaagcctggtttgaactgcttgct 242 ||||||| |||||||||||||||| Sbjct: 710689 aaagccttgtttgaactgcttgct 710666
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 aaagcctggtttgaactgcttgct 242 ||||||| |||||||||||||||| Sbjct: 710473 aaagccttgtttgaactgcttgct 710450
>gb|AC112925.8| Mus musculus chromosome 5, clone RP23-136I18, complete sequence Length = 195433 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tcaccttgatctcctctttc 435 |||||||||||||||||||| Sbjct: 123923 tcaccttgatctcctctttc 123942
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence Length = 154765 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tcaccttgatctcctctttc 435 |||||||||||||||||||| Sbjct: 49316 tcaccttgatctcctctttc 49335
>ref|XM_324076.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(P)H] (NCU04720.1) partial mRNA Length = 3531 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 cgctcatcttgagctccctcctca 340 ||||| |||||||||||||||||| Sbjct: 1231 cgctcttcttgagctccctcctca 1208
>ref|XM_955262.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(P)H] (NCU04720.1) partial mRNA Length = 3531 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 cgctcatcttgagctccctcctca 340 ||||| |||||||||||||||||| Sbjct: 1231 cgctcttcttgagctccctcctca 1208
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence Length = 143392 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 accttgatctcctctttcct 437 |||||||||||||||||||| Sbjct: 125193 accttgatctcctctttcct 125174
>gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, complete sequence Length = 185364 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cttcacgtatatcatccccttctc 317 ||||| |||||||||||||||||| Sbjct: 137669 cttcaagtatatcatccccttctc 137692
>gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, complete sequence Length = 136964 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tcaccttgatctcctctttc 435 |||||||||||||||||||| Sbjct: 133057 tcaccttgatctcctctttc 133076
>gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, complete sequence Length = 108182 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 cttcacgtatatcatccccttctc 317 ||||| |||||||||||||||||| Sbjct: 78131 cttcaagtatatcatccccttctc 78154
>emb|AL512844.5| Human DNA sequence from clone RP11-90H3 on chromosome 1 Contains two matrin 3 (MATR3) pseudogenes, complete sequence Length = 159017 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tacaaacagggtacagatac 75 |||||||||||||||||||| Sbjct: 71770 tacaaacagggtacagatac 71789
>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence Length = 151045 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 accagaatctcggacacatt 389 |||||||||||||||||||| Sbjct: 90041 accagaatctcggacacatt 90022
>gb|AC116036.3| Homo sapiens chromosome 3 clone RP11-359I18, complete sequence Length = 178119 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 tactgaaacccaccctcaactccc 187 ||||||| |||||||||||||||| Sbjct: 35493 tactgaaccccaccctcaactccc 35516
>dbj|AK124775.1| Homo sapiens cDNA FLJ42785 fis, clone BRAWH3006548 Length = 3842 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 tactgaaacccaccctcaactccc 187 ||||||| |||||||||||||||| Sbjct: 1675 tactgaaccccaccctcaactccc 1698
>gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, complete sequence Length = 59463 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 accctcaactcccctctcaccttc 198 |||||||||||||||| ||||||| Sbjct: 56705 accctcaactcccctcccaccttc 56682
>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5, complete sequence Length = 197352 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 gggcttaaggtcataagcca 491 |||||||||||||||||||| Sbjct: 18321 gggcttaaggtcataagcca 18302
>gb|AC135507.2| Homo sapiens chromosome 3 clone RP11-802O23, complete sequence Length = 171175 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 tactgaaacccaccctcaactccc 187 ||||||| |||||||||||||||| Sbjct: 123851 tactgaaccccaccctcaactccc 123874
>gb|BC091721.1| Xenopus laevis cDNA clone IMAGE:4173501 Length = 2895 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 catcttcaccttgatctcct 430 |||||||||||||||||||| Sbjct: 2695 catcttcaccttgatctcct 2676
>emb|AL158801.4|CNS01RGN Human chromosome 14 DNA sequence BAC R-665C16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 205860 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tctctttttctcaaagccaa 143 |||||||||||||||||||| Sbjct: 69634 tctctttttctcaaagccaa 69653
>emb|BX537600.1|HSM806302 Homo sapiens mRNA; cDNA DKFZp686O16145 (from clone DKFZp686O16145) Length = 4237 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 tactgaaacccaccctcaactccc 187 ||||||| |||||||||||||||| Sbjct: 789 tactgaaccccaccctcaactccc 812
>emb|AL137938.1|HSM802129 Homo sapiens mRNA; cDNA DKFZp761M0223 (from clone DKFZp761M0223) Length = 3764 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 tactgaaacccaccctcaactccc 187 ||||||| |||||||||||||||| Sbjct: 213 tactgaaccccaccctcaactccc 236
>gb|L07391.1|NEUNIT6X Neurospora crassa nitrite reductase (nit-6) gene, exons 1-4 Length = 4800 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 cgctcatcttgagctccctcctca 340 ||||| |||||||||||||||||| Sbjct: 2184 cgctcttcttgagctccctcctca 2161 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,167,573 Number of Sequences: 3902068 Number of extensions: 4167573 Number of successful extensions: 74065 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73903 Number of HSP's gapped (non-prelim): 158 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
