ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal27f02 |
|---|---|
| Clone Library Name | barley_pub |
>ERG1_PANGI (O48651) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)| (SE) Length = 539 Score = 197 bits (502), Expect(2) = 1e-51 Identities = 93/111 (83%), Positives = 100/111 (90%) Frame = -3 Query: 539 KVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGR 360 KVF ASPDKAR EMR ACFDYLSLGG+CS GPIALLSGLNPRP+SL HFFAVAI+GVGR Sbjct: 427 KVFCASPDKARQEMRNACFDYLSLGGICSQGPIALLSGLNPRPISLFLHFFAVAIYGVGR 486 Query: 359 LMLPLPSPKRMWTGARLISGACGIIFPIIKAEGVRQMFFPATVPAYYRAPP 207 L++P PSPKRMW GARLI GA GIIFPIIK+EG+RQMFFPA VPAYYRAPP Sbjct: 487 LLIPFPSPKRMWLGARLILGASGIIFPIIKSEGLRQMFFPAIVPAYYRAPP 537 Score = 25.4 bits (54), Expect(2) = 1e-51 Identities = 11/11 (100%), Positives = 11/11 (100%) Frame = -2 Query: 570 TINTLAGALYK 538 TINTLAGALYK Sbjct: 417 TINTLAGALYK 427
>ERG11_ARATH (O65404) Squalene monooxygenase 1,1 (EC 1.14.99.7) (Squalene| epoxidase 1,1) (SE 1,1) Length = 516 Score = 112 bits (279), Expect = 1e-24 Identities = 51/111 (45%), Positives = 74/111 (66%) Frame = -3 Query: 545 YTKVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 366 +++V AS D+A++ MRQ C+DYLS GG ++G +ALL G+NPRP+SL+ H A+ + + Sbjct: 399 FSQVLVASTDEAKEAMRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSI 458 Query: 365 GRLMLPLPSPKRMWTGARLISGACGIIFPIIKAEGVRQMFFPATVPAYYRA 213 G L+ P PSP R+W RL A ++ P +KAEGV QM FP AY ++ Sbjct: 459 GHLLSPFPSPLRIWHSLRLFGLAMKMLVPHLKAEGVSQMLFPVNAAAYSKS 509
>ERG12_ARATH (O65402) Squalene monooxygenase 1,2 (EC 1.14.99.7) (Squalene| epoxidase 1,2) (SE 1,2) Length = 517 Score = 108 bits (269), Expect = 1e-23 Identities = 50/111 (45%), Positives = 74/111 (66%) Frame = -3 Query: 545 YTKVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 366 +++V S D+A++ MRQ +DYL GG ++G +ALL G+NPRPLSLV H A+ + + Sbjct: 400 FSQVLIGSTDEAKEAMRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSI 459 Query: 365 GRLMLPLPSPKRMWTGARLISGACGIIFPIIKAEGVRQMFFPATVPAYYRA 213 G+L+ P PSP R+W +L A ++ P +KAEGV QM FPA AY+++ Sbjct: 460 GQLLSPFPSPLRIWHSLKLFGLAMKMLVPNLKAEGVSQMLFPANAAAYHKS 510
>ERG12_BRANA (O65726) Squalene monooxygenase 1,2 (EC 1.14.99.7) (Squalene| epoxidase 1,2) (SE 1,2) Length = 518 Score = 107 bits (266), Expect = 3e-23 Identities = 48/111 (43%), Positives = 74/111 (66%) Frame = -3 Query: 545 YTKVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 366 + +V AS D+A++ MRQ CFDYLS GG ++G +AL+ G+NPRPLSL H F +++ + Sbjct: 401 FWQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSI 460 Query: 365 GRLMLPLPSPKRMWTGARLISGACGIIFPIIKAEGVRQMFFPATVPAYYRA 213 G+L+ P P+P R+W RL+ + ++ P +KAEG+ QM P AY ++ Sbjct: 461 GQLLSPFPTPLRVWHSLRLLDLSLKMLVPHLKAEGIGQMLSPTNAAAYRKS 511
>ERG11_BRANA (O65727) Squalene monooxygenase 1,1 (EC 1.14.99.7) (Squalene| epoxidase 1,1) (SE 1,1) Length = 506 Score = 95.5 bits (236), Expect = 9e-20 Identities = 48/111 (43%), Positives = 67/111 (60%) Frame = -3 Query: 545 YTKVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 366 +++V AS D+A++ MRQ CFDYLS GG ++G +ALL G+NPRPLSL+ H + + + Sbjct: 400 FSQVLIASTDEAKEAMRQGCFDYLSSGGFRTSGMMALLGGMNPRPLSLIFHLCGITLSSI 459 Query: 365 GRLMLPLPSPKRMWTGARLISGACGIIFPIIKAEGVRQMFFPATVPAYYRA 213 G+L+ P PSP +W RL AEGV QM PA AY ++ Sbjct: 460 GQLLSPFPSPLGIWHSLRLFG-----------AEGVSQMLSPAYAAAYRKS 499
>ERG13_ARATH (O65403) Squalene monooxygenase 2 (EC 1.14.99.7) (Squalene| epoxidase 2) (SE 2) Length = 516 Score = 92.8 bits (229), Expect = 6e-19 Identities = 41/111 (36%), Positives = 68/111 (61%) Frame = -3 Query: 548 LYTKVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFG 369 ++++V A+ D+AR+ MRQ CF+YL+ G + G + +L G+NP PL+LV H A+ + Sbjct: 398 IFSQVLVATTDEAREGMRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTS 457 Query: 368 VGRLMLPLPSPKRMWTGARLISGACGIIFPIIKAEGVRQMFFPATVPAYYR 216 +G L+ P PSP+R W R+++ A ++ + EG ++M P AY R Sbjct: 458 MGHLLSPFPSPRRFWHSLRILAWALQMLGAHLVDEGFKEMLIPTNAAAYRR 508
>ERG1_HUMAN (Q14534) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)| (SE) Length = 574 Score = 77.8 bits (190), Expect = 2e-14 Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 3/95 (3%) Frame = -3 Query: 539 KVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGR 360 ++FSA+ D ++R+ACF Y LGG C GP+ LLS L+P PL+L+ HFFAVAI+ V Sbjct: 475 ELFSATDDSLH-QLRKACFLYFKLGGECVAGPVGLLSVLSPNPLALIGHFFAVAIYAVYF 533 Query: 359 LMLPLP---SPKRMWTGARLISGACGIIFPIIKAE 264 P P+ + + + ++ AC +IFP+I +E Sbjct: 534 CFKSEPWITKPRALLSSSAVLYKACSVIFPLIYSE 568
>ERG1_RAT (P52020) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)| (SE) Length = 573 Score = 76.3 bits (186), Expect = 6e-14 Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 3/95 (3%) Frame = -3 Query: 539 KVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGR 360 ++FSA+ D R ++R+ACF Y LGG C GP+ LLS L+P PL L+ HFF+VA++ Sbjct: 474 ELFSATDDSLR-QLRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVYATYF 532 Query: 359 LMLPLP---SPKRMWTGARLISGACGIIFPIIKAE 264 P P+ +++ ++ AC IIFP+I +E Sbjct: 533 CFKSEPWATKPRALFSSGAILYKACSIIFPLIYSE 567
>ERG1_MOUSE (P52019) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)| (SE) Length = 572 Score = 74.3 bits (181), Expect = 2e-13 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 3/95 (3%) Frame = -3 Query: 539 KVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGR 360 ++FSA+ D ++R+ACF Y LGG C GP+ LLS L+P PL L+ HFF+VAI+ Sbjct: 473 ELFSATDDSLH-QLRKACFLYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIYATYF 531 Query: 359 LMLPLP---SPKRMWTGARLISGACGIIFPIIKAE 264 P P+ +++ ++ AC I+FP+I +E Sbjct: 532 CFKSEPWATKPRALFSSGAVLYKACSILFPLIYSE 566
>ERG1_SCHPO (Q9C1W3) Probable squalene monooxygenase (EC 1.14.99.7) (Squalene| epoxidase) (SE) Length = 457 Score = 55.8 bits (133), Expect = 8e-08 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Frame = -3 Query: 500 MRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGRLMLPLPS---PKR 330 + C DY GG C GPI LL GL+ P L+ HF+AV ++G+ + +L P+ P R Sbjct: 373 LESGCIDYFKRGGNCVEGPIRLLGGLDHSPSHLIGHFYAVCLYGIYQYVLSGPALLMPVR 432 Query: 329 MWTGARLISGACGIIFPIIKAE 264 + + A +I P I +E Sbjct: 433 IIESLLIFLQASLVIIPYILSE 454
>ERG1_CANAL (Q92206) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)| (SE) Length = 496 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -3 Query: 500 MRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 366 +R CF Y GG C NGPI LLSG+ P P+ L HFF+VA + V Sbjct: 412 LRNGCFKYFQRGGECVNGPIGLLSGMLPFPMLLFNHFFSVAFYSV 456
>ERG1_YEAST (P32476) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)| (SE) Length = 496 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/63 (39%), Positives = 38/63 (60%) Frame = -3 Query: 554 LVLYTKVFSASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAI 375 + LY+ +F+A D + +++ CF Y GG C N P+ LSG+ P+PL L FFAVA Sbjct: 396 VALYS-LFAADSDNLK-ALQKGCFKYFQRGGDCVNKPVEFLSGVLPKPLQLTRVFFAVAF 453 Query: 374 FGV 366 + + Sbjct: 454 YTI 456
>ERG1_CANGA (O13306) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)| (SE) Length = 489 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/54 (40%), Positives = 32/54 (59%) Frame = -3 Query: 527 ASPDKARDEMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 366 A+ K +++ CF Y GG C N P+A L+G+ P+PL L FFAVA + + Sbjct: 396 AADSKNLKALQKGCFKYFQRGGDCVNLPVAFLAGVLPKPLLLTRVFFAVAFYTI 449
>ERG1_ASHGO (Q75F69) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)| (SE) Length = 497 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%) Frame = -3 Query: 503 EMRQACFDYLSLGGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV---GRLMLPLPSPK 333 ++++ CF+YL G PI+ LSG+ P P L FF VA++ V R PL Sbjct: 412 KLQKGCFEYLGRGEDWVRQPISFLSGVLPSPYLLTKVFFTVALYSVLINFRGRTPLGFLL 471 Query: 332 RMWTGARLISGACGIIFPII 273 ++ G +I A + P + Sbjct: 472 AIYEGFAIIFTAAKVFTPFL 491
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 32.7 bits (73), Expect = 0.74 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +1 Query: 190 LQNSASGGAR*YAGTVAGKNICLTPSALIIGKM--IPHAPEINLAPVHIRLGEGRGSISR 363 L SA G A A VA + + +A I G + P NL PV + G G GS+ Sbjct: 626 LMQSAGGAAAAAAAAVAAQRMVCFSNARINGVKPEVIGGPLGNLRPVGVGGGNGSGSVQC 685 Query: 364 PTPKIATAKKCATKLNGRGLRPESRAMGPFEQTPPR 471 P+P +++ + L P++ + QTPPR Sbjct: 686 PSPHPSSSSSSSQ------LSPQTPS-----QTPPR 710
>DSBB_RALSO (Q8XZM2) Disulfide bond formation protein B (Disulfide| oxidoreductase) Length = 159 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -3 Query: 434 LSGLNPRPLSLVAHFFAVAIFGVGRLMLPLPSPKRM-WTGARLISGACGI 288 + GL P PL ++ F V I GV L+ L S R+ W G ++SG GI Sbjct: 29 VEGLQPCPLCVLQRFAFVGI-GVFSLLAALSSATRLLWHGLGMLSGLGGI 77
>IPPD_MOUSE (Q60829) Dopamine- and cAMP-regulated neuronal phosphoprotein| (DARPP-32) Length = 194 Score = 29.6 bits (65), Expect = 6.3 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 Query: 403 KLNGRGLRPESRAMGPFEQTPPRLK*SKHAWRISSLA 513 + +G G P+S+ P TPP LK +H IS+L+ Sbjct: 56 RTSGEGHHPKSKRPNPCAYTPPSLKAVQHLQTISNLS 92
>RL16_MYCHJ (Q4AAE7) 50S ribosomal protein L16| Length = 136 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Frame = +1 Query: 202 ASGGAR*YAGTVAGKNICLTP----SALIIGKMIPHAPEINLAPVHIRLGEGRGSISRPT 369 A+G A A + I +T +I ++ PH + P+ +R+G G+GS+ R Sbjct: 37 ATGSAWVSAAQIEAARIAITRRMGREGQVIIRVFPHLA-LTSKPIGVRMGSGKGSVDR-- 93 Query: 370 PKIATAKKCATKLNGRGLRPE 432 +A K+ RG++ E Sbjct: 94 -WVAVVKRNTILFEVRGVKDE 113
>RL16_MYCH7 (Q4A8H8) 50S ribosomal protein L16| Length = 136 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Frame = +1 Query: 202 ASGGAR*YAGTVAGKNICLTP----SALIIGKMIPHAPEINLAPVHIRLGEGRGSISRPT 369 A+G A A + I +T +I ++ PH + P+ +R+G G+GS+ R Sbjct: 37 ATGSAWVSAAQIEAARIAITRRMGREGQVIIRVFPHLA-LTSKPIGVRMGSGKGSVDR-- 93 Query: 370 PKIATAKKCATKLNGRGLRPE 432 +A K+ RG++ E Sbjct: 94 -WVAVVKRNTILFEVRGVKDE 113
>RL16_MYCH2 (Q601K7) 50S ribosomal protein L16| Length = 136 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Frame = +1 Query: 202 ASGGAR*YAGTVAGKNICLTP----SALIIGKMIPHAPEINLAPVHIRLGEGRGSISRPT 369 A+G A A + I +T +I ++ PH + P+ +R+G G+GS+ R Sbjct: 37 ATGSAWVSAAQIEAARIAITRRMGREGQVIIRVFPHLA-LTSKPIGVRMGSGKGSVDR-- 93 Query: 370 PKIATAKKCATKLNGRGLRPE 432 +A K+ RG++ E Sbjct: 94 -WVAVVKRNTILFEVRGVKDE 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,662,402 Number of Sequences: 219361 Number of extensions: 1835493 Number of successful extensions: 4677 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4542 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4672 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
