ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal27e20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472968.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 220 bits (111), Expect = 4e-54 Identities = 192/219 (87%) Strand = Plus / Minus Query: 412 tcagctggcaagcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaatt 471 |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 468 tcagctagcaagcttgaaggcatcaataaacaggccatatgtgaaacccatcttgaagtt 409 Query: 472 gttgaggagtgcgacggcgaaggtaaccttaggtcggctgtagtagaactttgtgacata 531 ||||||||| || | | ||||||||||||||| ||||||||||||||||| || || || Sbjct: 408 gttgaggagagcaaatgggaaggtaaccttaggccggctgtagtagaacttagttacgta 349 Query: 532 ctcggtcagcaggacacacacaaccgctgctataacatcgttcacggccaaggcaccgaa 591 || || ||||||||||||||||| |||||||| ||||||||||| |||| || ||||| Sbjct: 348 ttcagtaagcaggacacacacaactgctgctatgacatcgttcacacccaacgctccgaa 289 Query: 592 tgacagggatattgtctgcgcaacataaaagccacccag 630 ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 288 agacagagatattgtctgcgccacataaaagcctcccag 250
>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete sequence Length = 141128 Score = 220 bits (111), Expect = 4e-54 Identities = 192/219 (87%) Strand = Plus / Minus Query: 412 tcagctggcaagcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaatt 471 |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 96006 tcagctagcaagcttgaaggcatcaataaacaggccatatgtgaaacccatcttgaagtt 95947 Query: 472 gttgaggagtgcgacggcgaaggtaaccttaggtcggctgtagtagaactttgtgacata 531 ||||||||| || | | ||||||||||||||| ||||||||||||||||| || || || Sbjct: 95946 gttgaggagagcaaatgggaaggtaaccttaggccggctgtagtagaacttagttacgta 95887 Query: 532 ctcggtcagcaggacacacacaaccgctgctataacatcgttcacggccaaggcaccgaa 591 || || ||||||||||||||||| |||||||| ||||||||||| |||| || ||||| Sbjct: 95886 ttcagtaagcaggacacacacaactgctgctatgacatcgttcacacccaacgctccgaa 95827 Query: 592 tgacagggatattgtctgcgcaacataaaagccacccag 630 ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 95826 agacagagatattgtctgcgccacataaaagcctcccag 95788
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 220 bits (111), Expect = 4e-54 Identities = 192/219 (87%) Strand = Plus / Minus Query: 412 tcagctggcaagcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaatt 471 |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 24379595 tcagctagcaagcttgaaggcatcaataaacaggccatatgtgaaacccatcttgaagtt 24379536 Query: 472 gttgaggagtgcgacggcgaaggtaaccttaggtcggctgtagtagaactttgtgacata 531 ||||||||| || | | ||||||||||||||| ||||||||||||||||| || || || Sbjct: 24379535 gttgaggagagcaaatgggaaggtaaccttaggccggctgtagtagaacttagttacgta 24379476 Query: 532 ctcggtcagcaggacacacacaaccgctgctataacatcgttcacggccaaggcaccgaa 591 || || ||||||||||||||||| |||||||| ||||||||||| |||| || ||||| Sbjct: 24379475 ttcagtaagcaggacacacacaactgctgctatgacatcgttcacacccaacgctccgaa 24379416 Query: 592 tgacagggatattgtctgcgcaacataaaagccacccag 630 ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 24379415 agacagagatattgtctgcgccacataaaagcctcccag 24379377
>dbj|AK104248.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F10, full insert sequence Length = 1010 Score = 220 bits (111), Expect = 4e-54 Identities = 192/219 (87%) Strand = Plus / Minus Query: 412 tcagctggcaagcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaatt 471 |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 676 tcagctagcaagcttgaaggcatcaataaacaggccatatgtgaaacccatcttgaagtt 617 Query: 472 gttgaggagtgcgacggcgaaggtaaccttaggtcggctgtagtagaactttgtgacata 531 ||||||||| || | | ||||||||||||||| ||||||||||||||||| || || || Sbjct: 616 gttgaggagagcaaatgggaaggtaaccttaggccggctgtagtagaacttagttacgta 557 Query: 532 ctcggtcagcaggacacacacaaccgctgctataacatcgttcacggccaaggcaccgaa 591 || || ||||||||||||||||| |||||||| ||||||||||| |||| || ||||| Sbjct: 556 ttcagtaagcaggacacacacaactgctgctatgacatcgttcacacccaacgctccgaa 497 Query: 592 tgacagggatattgtctgcgcaacataaaagccacccag 630 ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 496 agacagagatattgtctgcgccacataaaagcctcccag 458
>dbj|AK073488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040L19, full insert sequence Length = 1083 Score = 220 bits (111), Expect = 4e-54 Identities = 192/219 (87%) Strand = Plus / Minus Query: 412 tcagctggcaagcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaatt 471 |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 702 tcagctagcaagcttgaaggcatcaataaacaggccatatgtgaaacccatcttgaagtt 643 Query: 472 gttgaggagtgcgacggcgaaggtaaccttaggtcggctgtagtagaactttgtgacata 531 ||||||||| || | | ||||||||||||||| ||||||||||||||||| || || || Sbjct: 642 gttgaggagagcaaatgggaaggtaaccttaggccggctgtagtagaacttagttacgta 583 Query: 532 ctcggtcagcaggacacacacaaccgctgctataacatcgttcacggccaaggcaccgaa 591 || || ||||||||||||||||| |||||||| ||||||||||| |||| || ||||| Sbjct: 582 ttcagtaagcaggacacacacaactgctgctatgacatcgttcacacccaacgctccgaa 523 Query: 592 tgacagggatattgtctgcgcaacataaaagccacccag 630 ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 522 agacagagatattgtctgcgccacataaaagcctcccag 484
>dbj|AK058955.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B02, full insert sequence Length = 685 Score = 220 bits (111), Expect = 4e-54 Identities = 192/219 (87%) Strand = Plus / Minus Query: 412 tcagctggcaagcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaatt 471 |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 351 tcagctagcaagcttgaaggcatcaataaacaggccatatgtgaaacccatcttgaagtt 292 Query: 472 gttgaggagtgcgacggcgaaggtaaccttaggtcggctgtagtagaactttgtgacata 531 ||||||||| || | | ||||||||||||||| ||||||||||||||||| || || || Sbjct: 291 gttgaggagagcaaatgggaaggtaaccttaggccggctgtagtagaacttagttacgta 232 Query: 532 ctcggtcagcaggacacacacaaccgctgctataacatcgttcacggccaaggcaccgaa 591 || || ||||||||||||||||| |||||||| ||||||||||| |||| || ||||| Sbjct: 231 ttcagtaagcaggacacacacaactgctgctatgacatcgttcacacccaacgctccgaa 172 Query: 592 tgacagggatattgtctgcgcaacataaaagccacccag 630 ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 171 agacagagatattgtctgcgccacataaaagcctcccag 133
>dbj|AK060198.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-F09, full insert sequence Length = 802 Score = 133 bits (67), Expect = 8e-28 Identities = 100/111 (90%) Strand = Plus / Minus Query: 412 tcagctggcaagcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaatt 471 |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 111 tcagctagcaagcttgaaggcatcaataaacaggccatatgtgaaacccatcttgaagtt 52 Query: 472 gttgaggagtgcgacggcgaaggtaaccttaggtcggctgtagtagaactt 522 ||||||||| || | | ||||||||||||||| ||||||||||||||||| Sbjct: 51 gttgaggagagcaaatgggaaggtaaccttaggccggctgtagtagaactt 1
>ref|NM_123671.2| Arabidopsis thaliana unknown protein AT5G43050 mRNA, complete cds Length = 693 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 422 agcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaattgttgag 477 ||||||||||| |||||||| || ||||| ||||| |||||||||||||| ||||| Sbjct: 542 agcttgaaggcgtcaatgaagagaccataagtgaaacccatcttgaaattattgag 487 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Minus Query: 553 aaccgctgctataacatcgttcacggccaaggcaccgaatgacagggatattgtctgcgc 612 |||||| || |||||||||||||| |||| || || || || || || || |||||||| Sbjct: 411 aaccgcagcaataacatcgttcactcccaatgctccaaacgagagagagatagtctgcgc 352 Query: 613 aacataaaagccacc 627 |||||||||||||| Sbjct: 351 gacataaaagccacc 337
>gb|BT024700.1| Arabidopsis thaliana At5g43050 mRNA, complete cds Length = 477 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 422 agcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaattgttgag 477 ||||||||||| |||||||| || ||||| ||||| |||||||||||||| ||||| Sbjct: 467 agcttgaaggcgtcaatgaagagaccataagtgaaacccatcttgaaattattgag 412 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Minus Query: 553 aaccgctgctataacatcgttcacggccaaggcaccgaatgacagggatattgtctgcgc 612 |||||| || |||||||||||||| |||| || || || || || || || |||||||| Sbjct: 336 aaccgcagcaataacatcgttcactcccaatgctccaaacgagagagagatagtctgcgc 277 Query: 613 aacataaaagccacc 627 |||||||||||||| Sbjct: 276 gacataaaagccacc 262
>emb|BX833464.1|CNS0A1ST Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL57ZE07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 696 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 422 agcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaattgttgag 477 ||||||||||| |||||||| || ||||| ||||| |||||||||||||| ||||| Sbjct: 542 agcttgaaggcgtcaatgaagagaccataagtgaaacccatcttgaaattattgag 487
>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4 Length = 79046 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 422 agcttgaaggcatcaatgaaaaggccatatgtgaagcccatcttgaaattgttgag 477 ||||||||||| |||||||| || ||||| ||||| |||||||||||||| ||||| Sbjct: 14809 agcttgaaggcgtcaatgaagagaccataagtgaaacccatcttgaaattattgag 14754 Score = 46.1 bits (23), Expect = 0.14 Identities = 62/75 (82%) Strand = Plus / Minus Query: 553 aaccgctgctataacatcgttcacggccaaggcaccgaatgacagggatattgtctgcgc 612 |||||| || |||||||||||||| |||| || || || || || || || |||||||| Sbjct: 14678 aaccgcagcaataacatcgttcactcccaatgctccaaacgagagagagatagtctgcgc 14619 Query: 613 aacataaaagccacc 627 |||||||||||||| Sbjct: 14618 gacataaaagccacc 14604
>emb|BX539348.8| Zebrafish DNA sequence from clone DKEY-273G16 in linkage group 15, complete sequence Length = 186416 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aacaataatatcaaaacaaag 152 ||||||||||||||||||||| Sbjct: 119114 aacaataatatcaaaacaaag 119134
>emb|BX005045.10| Zebrafish DNA sequence from clone CH211-69C9 in linkage group 19, complete sequence Length = 161812 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 aacaataatatcaaaacaaag 152 ||||||||||||||||||||| Sbjct: 13441 aacaataatatcaaaacaaag 13421
>gb|AC125532.3| Mus musculus BAC clone RP23-447C2 from 10, complete sequence Length = 182582 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 taacaataatatcaaaacaaa 151 ||||||||||||||||||||| Sbjct: 105750 taacaataatatcaaaacaaa 105730
>gb|AC153971.3| Mus musculus 10 BAC RP24-254O21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159743 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 taacaataatatcaaaacaaa 151 ||||||||||||||||||||| Sbjct: 159075 taacaataatatcaaaacaaa 159095
>ref|NM_102801.1| Arabidopsis thaliana kinase/ protein kinase AT1G30640 mRNA, complete cds Length = 1689 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 attgtctgcgcaacataaaa 621 |||||||||||||||||||| Sbjct: 683 attgtctgcgcaacataaaa 664
>gb|AY768163.1| Hepatitis C virus isolate 51074-R core E1 gene, partial sequence Length = 358 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 619 aaagccacccagcagcgcga 638 |||||||||||||||||||| Sbjct: 149 aaagccacccagcagcgcga 130
>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence Length = 209081 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 aatacaagaccaaaaaagga 308 |||||||||||||||||||| Sbjct: 200279 aatacaagaccaaaaaagga 200260
>gb|AC072052.6| Homo sapiens BAC clone CTD-2195F21 from 7, complete sequence Length = 137074 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aaactggacctgcagtatca 244 |||||||||||||||||||| Sbjct: 134997 aaactggacctgcagtatca 134978
>gb|AC146606.2| Mus musculus BAC clone RP23-277P7 from chromosome 15, complete sequence Length = 171208 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 aatacaagaccaaaaaagga 308 |||||||||||||||||||| Sbjct: 148479 aatacaagaccaaaaaagga 148498
>emb|CR627491.15| Zebrafish DNA sequence from clone DKEY-163B6 in linkage group 8, complete sequence Length = 243757 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 agctgaactcgggctacaaactgg 231 ||||||||||||||||| |||||| Sbjct: 150704 agctgaactcgggctacgaactgg 150681
>emb|AL513013.12| Human DNA sequence from clone RP5-990P15 on chromosome 1 Contains the 5' end of a novel gene, a novel gene (DKFZp564J047), two novel genes and a CpG island, complete sequence Length = 77001 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tgggccaatgttcacatgga 288 |||||||||||||||||||| Sbjct: 12936 tgggccaatgttcacatgga 12955
>emb|AL139108.17| Human DNA sequence from clone RP4-759O7 on chromosome 6 Contains part of the FUT9 gene for fucosyltransferase 9 (alpha (1,3) fucosyltransferase), complete sequence Length = 30544 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 aatacaagaccaaaaaagga 308 |||||||||||||||||||| Sbjct: 7546 aatacaagaccaaaaaagga 7527
>gb|AC153538.10| Mus musculus 10 BAC RP23-136I11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210649 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tgtgatgaaaatgcatgtga 387 |||||||||||||||||||| Sbjct: 74880 tgtgatgaaaatgcatgtga 74861
>emb|AJ417719.2|NAM417719 Necator americanus complete mitochondrial genome Length = 13605 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 4032 aacaataatatcaaaacaaa 4013
>emb|CR382329.10| Zebrafish DNA sequence from clone DKEY-72L19 in linkage group 8, complete sequence Length = 81358 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 agctgaactcgggctacaaactgg 231 ||||||||||||||||| |||||| Sbjct: 6115 agctgaactcgggctacgaactgg 6138
>emb|BX470245.8| Zebrafish DNA sequence from clone DKEY-249O24 in linkage group 9, complete sequence Length = 132054 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tgatgaaaatgcatgtgaag 389 |||||||||||||||||||| Sbjct: 74023 tgatgaaaatgcatgtgaag 74004
>ref|NM_001004405.1| Gallus gallus calpain 3, (p94) (CAPN3), mRNA Length = 3454 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gttttttcaccatctttgcc 360 |||||||||||||||||||| Sbjct: 2084 gttttttcaccatctttgcc 2065
>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160440 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 129778 aacaataatatcaaaacaaa 129759
>gb|AY118588.1| Drosophila melanogaster LD44987 full insert cDNA Length = 1790 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 1646 aacaataatatcaaaacaaa 1627
>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187921 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 64968 aacaataatatcaaaacaaa 64949
>ref|NM_167337.1| Drosophila melanogaster CG3812-RB, transcript variant B (CG3812), mRNA Length = 1925 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 1796 aacaataatatcaaaacaaa 1777
>gb|AC036101.6| Homo sapiens chromosome 10 clone RP11-71J2, complete sequence Length = 175492 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 aattagctaacaataatatc 143 |||||||||||||||||||| Sbjct: 135767 aattagctaacaataatatc 135786
>ref|NM_132600.1| Drosophila melanogaster CG3812-RA, transcript variant A (CG3812), mRNA Length = 1834 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 1705 aacaataatatcaaaacaaa 1686
>gb|AC036114.7| Homo sapiens chromosome 11, clone RP11-283H3, complete sequence Length = 159851 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gccaatgttcacatggaaatacaa 295 ||||||| |||||||||||||||| Sbjct: 34833 gccaatgatcacatggaaatacaa 34810
>gb|AC034234.4| Homo sapiens chromosome 5 clone CTD-2254N19, complete sequence Length = 120295 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 8062 aacaataatatcaaaacaaa 8081
>gb|AC079064.6| Homo sapiens chromosome 11, clone RP11-485O14, complete sequence Length = 164009 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gccaatgttcacatggaaatacaa 295 ||||||| |||||||||||||||| Sbjct: 105728 gccaatgatcacatggaaatacaa 105705
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence Length = 96183 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 attgtctgcgcaacataaaa 621 |||||||||||||||||||| Sbjct: 37759 attgtctgcgcaacataaaa 37740
>gb|AC091955.2| Homo sapiens chromosome 5 clone RP11-429P5, complete sequence Length = 101948 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 87556 aacaataatatcaaaacaaa 87575
>gb|AC107310.15| Homo sapiens 3 BAC RP11-627C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 36922 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 caaaccagatatcaaagctg 212 |||||||||||||||||||| Sbjct: 33243 caaaccagatatcaaagctg 33262
>emb|BX470163.8| Zebrafish DNA sequence from clone DKEY-27A9 in linkage group 18, complete sequence Length = 241301 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 ttttttcaccatctttgcct 361 |||||||||||||||||||| Sbjct: 210212 ttttttcaccatctttgcct 210231
>emb|BX784024.10| Zebrafish DNA sequence from clone CH211-239J19 in linkage group 18, complete sequence Length = 110791 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ttttttcaccatctttgcct 361 |||||||||||||||||||| Sbjct: 20244 ttttttcaccatctttgcct 20225
>gb|AY169278.1| Erwinia chrysanthemi unknown genes Length = 7943 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 619 aaagccacccagcagcgcgatgcc 642 ||||||| |||||||||||||||| Sbjct: 2383 aaagccagccagcagcgcgatgcc 2406
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete sequence Length = 302665 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aacaataatatcaaaacaaa 151 |||||||||||||||||||| Sbjct: 146899 aacaataatatcaaaacaaa 146880
>gb|AC118226.7| Mus musculus chromosome 5, clone RP23-372N19, complete sequence Length = 173599 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tgaattagctaacaataata 141 |||||||||||||||||||| Sbjct: 62492 tgaattagctaacaataata 62511
>emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chromosome 4, complete sequence Length = 219956 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 atacaagaccaaaaaaggaatgta 313 |||||||||| ||||||||||||| Sbjct: 208538 atacaagacctaaaaaggaatgta 208561
>dbj|D38028.1|CHKP94 Gallus domesticus mRNA for n-calpain-1 large subunit (p94), complete cds Length = 3454 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gttttttcaccatctttgcc 360 |||||||||||||||||||| Sbjct: 2084 gttttttcaccatctttgcc 2065 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,821,373 Number of Sequences: 3902068 Number of extensions: 5821373 Number of successful extensions: 103536 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103434 Number of HSP's gapped (non-prelim): 98 length of query: 642 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 619 effective length of database: 17,143,297,704 effective search space: 10611701278776 effective search space used: 10611701278776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
