>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 404

 Score =  310 bits (793), Expect = 4e-84
 Identities = 150/151 (99%), Positives = 151/151 (100%)
 Frame = -3

Query: 710 QYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTC 531
           QYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEG+KFFNPVYLFDEGSTINWIPCGRKLTC
Sbjct: 244 QYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGIKFFNPVYLFDEGSTINWIPCGRKLTC 303

Query: 530 SYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 351
           SYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA
Sbjct: 304 SYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 363

Query: 350 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 258
           DFPGSNNGTGLFQTIVGLKIRDLYEQIIAER
Sbjct: 364 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 394

>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 395

 Score =  287 bits (735), Expect = 2e-77
 Identities = 138/151 (91%), Positives = 146/151 (96%)
 Frame = -3

Query: 710 QYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTC 531
           QYADAVIEVLPT LIPDDNEGKVLRV+LIMKEGVK+F+PVYLFDEGSTI+WIPCGRKLTC
Sbjct: 236 QYADAVIEVLPTTLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTISWIPCGRKLTC 295

Query: 530 SYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 351
           SYPGIKF+Y PD+YF  EVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA
Sbjct: 296 SYPGIKFNYEPDSYFDHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 355

Query: 350 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 258
           DFPGSNNGTGLFQTIVGLKIRDLYEQ+IA +
Sbjct: 356 DFPGSNNGTGLFQTIVGLKIRDLYEQLIANK 386

>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 397

 Score =  283 bits (724), Expect = 4e-76
 Identities = 135/151 (89%), Positives = 144/151 (95%)
 Frame = -3

Query: 710 QYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTC 531
           QYADAVIEVLPTQLIP DNEGKVLRV+LI KEGV++F+PVYLFDEGS+I WIPCGRKLTC
Sbjct: 237 QYADAVIEVLPTQLIPGDNEGKVLRVRLIQKEGVQYFSPVYLFDEGSSITWIPCGRKLTC 296

Query: 530 SYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 351
           SYPGIKF YGPDTYFG EV+VLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKH 
Sbjct: 297 SYPGIKFFYGPDTYFGNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQ 356

Query: 350 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 258
           DFPGSNNGTGLFQTIVGLKIRDL+EQ+IA +
Sbjct: 357 DFPGSNNGTGLFQTIVGLKIRDLFEQLIASK 387

>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 402

 Score =  278 bits (712), Expect = 9e-75
 Identities = 129/151 (85%), Positives = 144/151 (95%)
 Frame = -3

Query: 710 QYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTC 531
           Q+AD VIEVLPT+LIPDD+EGKVLRV++I KEGVKFFNPVYLFDEGSTI+WIPCGRKLTC
Sbjct: 242 QHADVVIEVLPTELIPDDDEGKVLRVRMIQKEGVKFFNPVYLFDEGSTISWIPCGRKLTC 301

Query: 530 SYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 351
           SYPGIKFSYGPDT++G EV+V+EMDG FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH 
Sbjct: 302 SYPGIKFSYGPDTFYGNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQ 361

Query: 350 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAER 258
           +FPGSNNGTG FQTI+GLKIRDL+EQ++A R
Sbjct: 362 NFPGSNNGTGFFQTIIGLKIRDLFEQLVASR 392

>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)|
           (Phosphopentokinase) (PRKase) (PRK)
          Length = 375

 Score =  247 bits (630), Expect = 3e-65
 Identities = 115/146 (78%), Positives = 136/146 (93%)
 Frame = -3

Query: 704 ADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSY 525
           AD +I+VLPTQL+PDD +G+ LRV+LIMKEG K F+PVYLFDEGSTI+WIPCGRKLTCS+
Sbjct: 224 ADMIIQVLPTQLVPDD-KGQYLRVRLIMKEGSKMFDPVYLFDEGSTISWIPCGRKLTCSF 282

Query: 524 PGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADF 345
           PGIK  YGPDT++GQEVSVLEMDGQFD+L+ELIYVESHLSN S KFYGE+TQQMLK++ F
Sbjct: 283 PGIKMFYGPDTWYGQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGF 342

Query: 344 PGSNNGTGLFQTIVGLKIRDLYEQII 267
           PGSNNGTGLFQTIVGLK+R++YE+I+
Sbjct: 343 PGSNNGTGLFQTIVGLKVREVYERIV 368

>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)|
           (PRKase) (PRK)
          Length = 332

 Score =  223 bits (567), Expect = 6e-58
 Identities = 100/150 (66%), Positives = 128/150 (85%)
 Frame = -3

Query: 710 QYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTC 531
           QYAD VI+VLPT+LI +D E K+LRV+L+ KEGVKFF P YLFDEGSTI+W PCGRKLTC
Sbjct: 177 QYADVVIQVLPTRLI-EDKESKLLRVRLVQKEGVKFFEPAYLFDEGSTIDWRPCGRKLTC 235

Query: 530 SYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHA 351
           +YPGIK  YGPD + G EVS+LE+DG+F+ L+E++YVE+HLS   TK+YGE+T+ +LKH 
Sbjct: 236 TYPGIKMYYGPDNFMGNEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHK 295

Query: 350 DFPGSNNGTGLFQTIVGLKIRDLYEQIIAE 261
           D+PG++NGTGLFQ +VGLK+R +YEQ+ AE
Sbjct: 296 DYPGTDNGTGLFQVLVGLKMRKVYEQLTAE 325

>ASSY_HALMA (Q5UZ46) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 420

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = -3

Query: 518 IKFSYGPDTYFGQEVSVLEMDGQFDRLDEL---IYVESHLSNLSTKFYGEVTQQMLKHAD 348
           +K  YG D   G  V V + D +F+  +E    + VE H+ + + +F     + +  +AD
Sbjct: 25  LKEEYGYDEVIGVTVDVGQPDYEFEEAEETAEALGVEQHVVDATEEFADLCMEAVKANAD 84

Query: 347 FPGSNNGTGLFQTIVGLKIRDLYE 276
           + G   GT L + ++   I  + E
Sbjct: 85  YQGYPLGTALARPVIAKAILSVAE 108

>KPPR_PINPS (P81664) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)|
           (PRKase) (PRK) (Fragments)
          Length = 35

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = -3

Query: 527 YPGIKFSYGPDTYFGQEVSVLEMDGQFDR 441
           Y  +KF YG  T    +VSVLEMDGQFDR
Sbjct: 8   YEQVKF-YGEVTQQMLKVSVLEMDGQFDR 35

>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1052

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +1

Query: 55   HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAHQTF 234
            +G     V+ AG H   + +S  F     +T HK +E  HS  +  E+  +  F     F
Sbjct: 769  YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNVQ--F 824

Query: 235  AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 345
                GTP +  M + + RS+ FS  +V K  + L L G
Sbjct: 825  VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862

>SYT_PROMP (Q7V287) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 638

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
 Frame = -3

Query: 704 ADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGVKFFNPVYLFDEGSTINWIPCGRKLTCSY 525
           A  V +VL    +P DN+ KV+ +    K+G++     +    G  +  +         Y
Sbjct: 37  AGKVNDVLFDATLPIDNDSKVVIITSRDKDGIEIIRHSFAHLIGHAVKQL---------Y 87

Query: 524 PGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYG-EVTQQMLKHA 351
           P IK + GP    G    +   + +F   ++LI +E+ ++NL  K Y  E+ Q   K A
Sbjct: 88  PNIKMAIGPVIDNGFYYDIFS-EYRFTP-EDLIKIENRINNLIKKNYDVEILQVTKKEA 144

>EXOS2_HUMAN (Q13868) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 4) (Exosome component 2)
          Length = 293

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 512 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 375
           F  G  TY G+E  +  + G  +R+++LI V++    L T++ GEV
Sbjct: 39  FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYIGEV 80

>EXOS2_MOUSE (Q8VBV3) Exosome complex exonuclease RRP4 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 4) (Exosome component 2)
          Length = 293

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 512 FSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEV 375
           F  G  TY G+E  +  + G  +R+++LI V++    L T++ GEV
Sbjct: 39  FMRGHGTYMGEEKLIASVAGSVERVNKLICVKA----LKTRYNGEV 80

>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like|
           protein FB
          Length = 1019

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 353
           RN  P+S ++ +  +++ S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640

>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC|
           4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit)
          Length = 1019

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 353
           RN  P+S ++ +  +++ S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640

>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC|
           4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit)
          Length = 1019

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 353
           RN  P+S ++ +  +++ S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640

>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like|
           protein ST-
          Length = 1019

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 353
           RN  P+S ++ +  +++ S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640

>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like|
           protein 1224-5/1F
          Length = 1019

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 246 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 353
           RN  P+S ++ +  + + S+  L E CS+   W +C
Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,891,619
Number of Sequences: 219361
Number of extensions: 2094724
Number of successful extensions: 5445
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5442
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)