ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8a10 |
|---|---|
| Clone Library Name | barley_pub |
>UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2| Length = 367 Score = 71.6 bits (174), Expect = 2e-12 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 6/113 (5%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQGVVLVKFKDRKDGLKCV 387 ++F+ EL LL +L+ D+ EE K G + NV + + P GVV V+F + ++ CV Sbjct: 255 HIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACV 314 Query: 386 EKMNGRWFGGRQIHASEDDGSI------KHALIRDYDAEVSRLERFGEELEES 246 M GR+F GR + AS DG + KH L D + E RLE+F + LE S Sbjct: 315 RLMQGRYFDGRVVEASIYDGKVRFQKSGKHTL-DDEEDEEKRLEKFADWLENS 366
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 53.9 bits (128), Expect = 4e-07 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREEC-VKFGLIDNVKVCENHPQGVVLVKFKDRKDGLKC 390 NMF+PAE + ELE DV+EEC K+G + ++ V N G + VKF++ K Sbjct: 513 NMFNPAE-ETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNE-LGQIFVKFENADFAEKA 570 Query: 389 VEKMNGRWFGGRQIHAS 339 + ++ RWFGGR I AS Sbjct: 571 ITGLHQRWFGGRTIKAS 587
>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor| 38 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 264 Score = 48.5 bits (114), Expect = 2e-05 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Frame = -2 Query: 506 DVREECV-KFGLIDNVKVCEN---HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 342 DV EC K+G I+ + VC+N H G V +KF++ D K +N RWFGGR +++ Sbjct: 86 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYS 144
>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 238 Score = 46.6 bits (109), Expect = 7e-05 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = -2 Query: 485 KFGLIDNVKVCEN---HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 342 K+G ++ + VC+N H G V VKF+ +D K V +N RWF G+ IHA Sbjct: 91 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 141
>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 239 Score = 46.6 bits (109), Expect = 7e-05 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = -2 Query: 485 KFGLIDNVKVCEN---HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 342 K+G ++ + VC+N H G V VKF+ +D K V +N RWF G+ IHA Sbjct: 91 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 141
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 46.6 bits (109), Expect = 7e-05 Identities = 27/77 (35%), Positives = 42/77 (54%) Frame = -2 Query: 569 ANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQGVVLVKFKDRKDGLKC 390 +NMF+P + + E++ DV EEC K G + ++ V +N QG V VK + Sbjct: 429 SNMFNP-QTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAA 487 Query: 389 VEKMNGRWFGGRQIHAS 339 V ++GRWF G+ I A+ Sbjct: 488 VNALHGRWFAGKMITAA 504
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 46.6 bits (109), Expect = 7e-05 Identities = 27/77 (35%), Positives = 42/77 (54%) Frame = -2 Query: 569 ANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQGVVLVKFKDRKDGLKC 390 +NMF+P + + E++ DV EEC K G + ++ V +N QG V VK + Sbjct: 429 SNMFNP-QTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAA 487 Query: 389 VEKMNGRWFGGRQIHAS 339 V ++GRWF G+ I A+ Sbjct: 488 VNALHGRWFAGKMITAA 504
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 46.2 bits (108), Expect = 9e-05 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Frame = -2 Query: 620 GVDMMXXXXXXXXXXXLANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV---CE 450 G+D+ L NM + ELR+DE LE DVREEC K+G++ ++++ + Sbjct: 377 GIDLSQGAGRATEILCLMNMVTEDELRSDEDYEEILE-DVREECSKYGIVRSLEIPRPYD 435 Query: 449 NHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 330 +HP G V V+F D + + GR F R + S D Sbjct: 436 DHPVPGVGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYD 478
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 43.5 bits (101), Expect = 6e-04 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV------CENHPQGVVLVKFKDRK 405 NM +P ELR++E LE D++EEC K+G++ +V++ E G V V+F Sbjct: 324 NMVTPDELRDEEEYEDILE-DIKEECTKYGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVL 382 Query: 404 DGLKCVEKMNGRWFGGRQIHASEDDGSIKH 315 D K + + GR F R + S D H Sbjct: 383 DCQKAQQALTGRKFSDRVVVTSYFDPDKYH 412
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 43.1 bits (100), Expect = 8e-04 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Frame = -2 Query: 620 GVDMMXXXXXXXXXXXLANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV---CE 450 G+D+ L NM + EL+ D+ LE DVR+EC K+G++ ++++ E Sbjct: 386 GIDLSQGAGRATEILCLMNMVTEDELKADDEYEEILE-DVRDECSKYGIVRSLEIPRPYE 444 Query: 449 NHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 330 +HP G V V+F D + + GR F R + S D Sbjct: 445 DHPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYD 487
>YN26_YEAST (P53830) Hypothetical 32.3 kDa protein in SEC21-MRPL10 intergenic| region Length = 285 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/66 (33%), Positives = 40/66 (60%) Frame = -2 Query: 539 NDETLLPELEVDVREECVKFGLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFG 360 ND+ + +++ D+ E C + G +D++ V N +G V FK+ K L+C + M GR+F Sbjct: 199 NDD--INDIQEDLLEGCEEIGQVDSISVSPN--KGEATVVFKNNKVALQCCKIMTGRYFD 254 Query: 359 GRQIHA 342 G+++ A Sbjct: 255 GQKLLA 260
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV------CENHPQGVVLVKFKDRK 405 NM P EL +DE E+ DVR+EC K+GL+ ++++ E G + V+F Sbjct: 382 NMVLPEELLDDEEY-EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVF 440 Query: 404 DGLKCVEKMNGRWFGGRQI 348 D K ++ + GR F R + Sbjct: 441 DCQKAMQGLTGRKFANRVV 459
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV------CENHPQGVVLVKFKDRK 405 NM P EL +DE E+ DVR+EC K+GL+ ++++ E G + V+F Sbjct: 382 NMVLPEELLDDEEY-EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVF 440 Query: 404 DGLKCVEKMNGRWFGGRQI 348 D K ++ + GR F R + Sbjct: 441 DCQKAMQGLTGRKFANRVV 459
>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 401 Score = 40.4 bits (93), Expect = 0.005 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = -2 Query: 518 ELEVDVREECVKFGLIDNVKVCE-----NHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGR 354 +LEV+ +EEC K+G + + E + + ++F+ + +K V +NGR+FGGR Sbjct: 321 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 380 Query: 353 QIHA 342 + A Sbjct: 381 VVKA 384
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 40.4 bits (93), Expect = 0.005 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = -2 Query: 518 ELEVDVREECVKFGLIDNVKVCE-----NHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGR 354 +LEV+ +EEC K+G + + E + + ++F+ + +K V +NGR+FGGR Sbjct: 325 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 384 Query: 353 QIHA 342 + A Sbjct: 385 VVKA 388
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 40.4 bits (93), Expect = 0.005 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 11/93 (11%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFG-----LIDNVKVCENHPQGV------VLVK 420 NM P ++ DETL E++ EEC KFG +I N K EN + V+ Sbjct: 543 NMVGPEDV--DETLQEEIQ----EECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVE 596 Query: 419 FKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSI 321 F + ++ E ++GR+FGGR++ A D I Sbjct: 597 FSAGAEAMRGKEALDGRFFGGRRVVAELYDQGI 629
>U2AF1_SCHPO (Q09176) Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor| 23 kDa subunit) (U2 snRNP auxiliary factor small subunit) (U2AF23) Length = 216 Score = 38.1 bits (87), Expect = 0.025 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -2 Query: 494 ECVKFGLIDNVKVCEN---HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 342 E K+G ++ + VC+N H G V V+FK + ++ +N RW+ R ++A Sbjct: 83 EFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYA 136
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 38.1 bits (87), Expect = 0.025 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCEN-------HPQGVVLVKFKDR 408 NM P ++ + ELE +V EC K+G + V + E H + V+F Sbjct: 289 NMVGPGQVDD------ELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRP 342 Query: 407 KDGLKCVEKMNGRWFGGRQIHAS 339 ++ K + ++GR+FGGR + A+ Sbjct: 343 EETTKALVDLDGRYFGGRTVRAT 365
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 37.0 bits (84), Expect = 0.057 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHP-QGVVLVKFKDRKDGLKC 390 N+ L N+E +E DV+EEC K+G + ++ V + +P +G V V++ + D Sbjct: 327 NVLDDDYLENEEEYEDVVE-DVKEECQKYGPVVSLLVPKENPGRGQVFVEYANAGDSKAA 385 Query: 389 VEKMNGRWFGGRQIHAS 339 + + GR F G+ + A+ Sbjct: 386 QKLLTGRMFDGKFVVAT 402
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 36.6 bits (83), Expect = 0.074 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Frame = -2 Query: 527 LLPELEV-DVREECVKFGLIDNVKVCEN----HPQGVVLVKFKDRKDGLKCVEKMNGRWF 363 L PE+ D++ FG I + +V ++ +G V F ++ D +++M G+W Sbjct: 113 LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 172 Query: 362 GGRQIHAS 339 GGRQI + Sbjct: 173 GGRQIRTN 180
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 35.8 bits (81), Expect = 0.13 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHP-QGVVLVKFKDRKDGLKC 390 N+ L N++ +E DV+EEC K+G + ++ V + +P +G V V++ + D Sbjct: 327 NVLDDDYLENEDEYEDVVE-DVKEECQKYGPVVSLLVPKENPGRGQVFVEYANAGDSKAA 385 Query: 389 VEKMNGRWFGGRQIHAS 339 + + GR F G+ + A+ Sbjct: 386 QKLLTGRMFDGKFVVAT 402
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 35.8 bits (81), Expect = 0.13 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -2 Query: 566 NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHP-QGVVLVKFKDRKDGLKC 390 N+ L N++ +E DV+EEC K+G + ++ V + +P +G V V++ + D Sbjct: 327 NVLDDDYLENEDEYEDVVE-DVKEECQKYGPVVSLLVPKENPGRGQVFVEYANAGDSKAA 385 Query: 389 VEKMNGRWFGGRQIHAS 339 + + GR F G+ + A+ Sbjct: 386 QKLLTGRMFDGKFVVAT 402
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = -2 Query: 527 LLPELEV-DVREECVKFGLIDNVKVCEN----HPQGVVLVKFKDRKDGLKCVEKMNGRWF 363 L PE+ D++ FG I + +V ++ +G V F ++ D + M G+W Sbjct: 121 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180 Query: 362 GGRQIHAS 339 GGRQI + Sbjct: 181 GGRQIRTN 188
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = -2 Query: 527 LLPELEV-DVREECVKFGLIDNVKVCEN----HPQGVVLVKFKDRKDGLKCVEKMNGRWF 363 L PE+ D++ FG I + +V ++ +G V F ++ D + M G+W Sbjct: 104 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 163 Query: 362 GGRQIHAS 339 GGRQI + Sbjct: 164 GGRQIRTN 171
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Frame = -2 Query: 506 DVREECVKFGLIDNVKVCEN----HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 339 D++ FG I + +V ++ +G V F ++ D +++M G+W GGRQI + Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 33.9 bits (76), Expect = 0.48 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 506 DVREECVKFGLIDNVKV----CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 339 D+R E ++G I +V + P+G V+F+D +D + +N +W GRQI Sbjct: 25 DLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQ 84 Query: 338 EDDGSIK 318 G K Sbjct: 85 FAQGDRK 91
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 33.5 bits (75), Expect = 0.63 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 506 DVREECVKFGLIDNVKV----CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 339 D+R E ++G I +V V P+G V+F+D +D + ++ +W GRQI Sbjct: 25 DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQ 84 Query: 338 EDDGSIK 318 G K Sbjct: 85 FAQGDRK 91
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 33.5 bits (75), Expect = 0.63 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 506 DVREECVKFGLIDNVKV----CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 339 D+R E ++G I +V V P+G V+F+D +D + ++ +W GRQI Sbjct: 25 DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQ 84 Query: 338 EDDGSIK 318 G K Sbjct: 85 FAQGDRK 91
>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) Length = 462 Score = 33.5 bits (75), Expect = 0.63 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = -2 Query: 506 DVREECVKFGLIDNVKVC---ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 348 DV E G + KV E H +G V V+++ +D NGRW+ GRQ+ Sbjct: 246 DVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQL 301
>U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) Length = 479 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 506 DVREECVKFGLIDNVKVC---ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 348 DV E G + KV E H +G V V+++ ++ + NGRW+ GRQ+ Sbjct: 247 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQL 302
>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) (NY-REN-20 antigen) Length = 482 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 506 DVREECVKFGLIDNVKVC---ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 348 DV E G + KV E H +G V V+++ ++ + NGRW+ GRQ+ Sbjct: 242 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQL 297
>U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) (SP2) Length = 428 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -2 Query: 506 DVREECVKFGLIDNVKVC---ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 348 DV E G + KV E H +G V V+++ ++ + NGRW+ GRQ+ Sbjct: 233 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQL 288
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -2 Query: 485 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 345 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 32.0 bits (71), Expect = 1.8 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = -2 Query: 440 QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIKHALIRDYDAEVSRLER 270 QG +K++D++ + V+ +NG GGR + K +L + Y+A L+R Sbjct: 72 QGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRSLQKYYEAVKEELDR 128
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -2 Query: 506 DVREECVKFGLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDG 327 D+ E K+G +++V + N P G V+F+ R D K + +NG G Q+ G Sbjct: 22 DLEGEFTKYGKLNSVWIAFN-PPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEISKG 80
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -2 Query: 485 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 345 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -2 Query: 485 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 345 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -2 Query: 485 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 345 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -2 Query: 485 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 345 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>RS8_STRPM (Q48VT5) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -2 Query: 479 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 330 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>RS8_STRP8 (P66636) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -2 Query: 479 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 330 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>RS8_STRP6 (Q5XEC1) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -2 Query: 479 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 330 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>RS8_STRP3 (P66635) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -2 Query: 479 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 330 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>RS8_STRP1 (P66634) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -2 Query: 479 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 330 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>IF2_ANAMM (Q5PAJ5) Translation initiation factor IF-2| Length = 832 Score = 31.2 bits (69), Expect = 3.1 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 12/105 (11%) Frame = -2 Query: 527 LLPELEVDVREECVKFGLIDNVKVCENHPQGVVLVKFK----DRKDGLKCVEKMNGRWFG 360 L+ + +VD+R V + LID+VK GVV K K + + GL V ++ G Sbjct: 699 LVRQKDVDIRHHRVIYDLIDDVK-------GVVCGKLKPIIREVQVGLLVVREVFSSGKG 751 Query: 359 GRQIHASEDDGSI-KHALIRDY-------DAEVSRLERFGEELEE 249 G I +G++ + AL++ Y + +V L RF ++++E Sbjct: 752 GTVIGCYVSEGAVSRGALVKIYRNDAVTCEGKVKVLRRFKDDVKE 796
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 30.8 bits (68), Expect = 4.1 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = -2 Query: 512 EVDVREECVKFGLIDNVKV---CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 345 E DVRE KFG++ V V + H +G +++++ L + +G F GR +H Sbjct: 321 EDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAAFQ-TDGTVFQGRIVH 378
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -2 Query: 485 KFGLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDG 327 K+G + NV V N P G V+F+DR+D ++G G +I G Sbjct: 33 KYGPLRNVWVARN-PPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSG 84
>TEGU_HCMV (P07387) Tegument protein (67 kDa phosphorylated protein)| Length = 549 Score = 30.4 bits (67), Expect = 5.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 259 SSPKRSSLDTSAS*SRMRACLIEPSSSLACICLPPNHLP 375 SSP R S++ + CL+ S++CI PPN P Sbjct: 400 SSPLREGTSGSSAHRPKQQCLLHCHQSISCILFPPNSSP 438
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 30.0 bits (66), Expect = 6.9 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 11/91 (12%) Frame = -2 Query: 482 FGLIDNVKVC--ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIKHAL 309 FG I + KV EN +G V F+ ++ K +EKMNG R++ G K Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----GRFKSR- 176 Query: 308 IRDYDAEVSR---------LERFGEELEEST 243 ++ +AE+ ++ FGEE+++ + Sbjct: 177 -KEREAELGAKAKEFTNVYIKNFGEEVDDES 206
>Y2992_CORGL (Q8NLF0) UPF0176 protein Cgl2992/cg3319| Length = 312 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = -2 Query: 521 PELEVDVREECVKFGLIDNVKVCEN 447 P+L V VR+E V FG D +KV EN Sbjct: 85 PKLSVKVRDEIVAFGAPDELKVDEN 109
>AT7L1_HUMAN (Q9ULK2) Ataxin-7-like protein 1 (Fragment)| Length = 864 Score = 29.6 bits (65), Expect = 9.0 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +3 Query: 594 SPSYHHVHPIPASYLQPSCLSFSFAYLPSLP 686 SP+ H P+PAS LQP + S YLPS P Sbjct: 521 SPAAHITTPVPASVLQPFS-NPSAVYLPSAP 550
>ASXL1_HUMAN (Q8IXJ9) Putative Polycomb group protein ASXL1 (Additional sex| combs-like protein 1) Length = 1541 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -1 Query: 474 DRQCQGL*KSSTRSCIGK--IQRPQRWSQMRREDERKMVWWEADTRERG 334 D+ CQ L S+++ + + +++PQ +R E E WE+D E+G Sbjct: 756 DQPCQALPLLSSQTSVAERLVEQPQLHPDVRTECESGTTSWESDDEEQG 804 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,038,363 Number of Sequences: 219361 Number of extensions: 1839801 Number of successful extensions: 4740 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 4567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4734 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
