>ENV_SFV1 (P23073) Env polyprotein (Coat polyprotein)|
          Length = 985

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
 Frame = +3

Query: 21  YMVKKGWSSVNVI-----------TIHYIKQNKWYYFSPFRE 113
           Y   KGW S  VI           T+ Y  QN W Y+ PF +
Sbjct: 236 YKTTKGWPSSTVIADQCPLPGNHPTVQYAHQNIWDYYVPFEQ 277

>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 85  SGTIFPPFASGKPTSREP*PAKTAPPPRSGLPDGDGA 195
           +G I PP   G P      P +  PP R+GLP  DGA
Sbjct: 407 AGLIGPPGIQGNPGPVGD-PGERGPPGRAGLPGSDGA 442

>JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylation protein 1A|
           (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and
           leucine-rich repeat protein 11)
          Length = 1146

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +1

Query: 118 KPTSREP*PAKTAPPPRSGLPDG----DGAHRRRVGC 216
           +P SR      TAPP  SG P G     GA RRRV C
Sbjct: 560 RPASRH----STAPPRTSGTPSGTTASSGARRRRVRC 592

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 101 PLSRVASQHRENPNQQRRPHLRGQGFPTATALTGD 205
           PLSR +S+ + + +Q  R  LRG+G PT  + T D
Sbjct: 185 PLSR-SSEQKPDRSQAIRDRLRGKGLPTGRSSTSD 218

>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3164

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 144 WLGFSRCWLATRERGKNSTTYSVL 73
           W GF RC+LA R   +  T YS L
Sbjct: 370 WKGFDRCFLAYRSDNREHTCYSGL 393

>3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)|
          Length = 559

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 124 TSREP*PAKTAPPPRSGLPDGDGA 195
           TS+ P P    PPP+ GLPD   A
Sbjct: 227 TSKSPSPLLPPPPPKRGLPDTGSA 250

>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 911

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 85  SGTIFPPFASGKPTSREP*PAKTAPPPRSGLPDGDG 192
           +G + PP   G PT     P +  PP R GLP  DG
Sbjct: 217 AGLMGPPGLQG-PTGPPGDPGERGPPGRPGLPGADG 251

>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 100 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 192
           PP  +G PT +   P +  PP R GLP  DG
Sbjct: 482 PPGTTG-PTGQMGDPGERGPPGRPGLPGADG 511

>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 100 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 192
           PP  +G PT +   P +  PP R GLP  DG
Sbjct: 484 PPGTTG-PTGQMGDPGERGPPGRPGLPGADG 513

>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 100 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 192
           PP  +G PT +   P +  PP R GLP  DG
Sbjct: 484 PPGTTG-PTGQVGDPGERGPPGRPGLPGADG 513

>ODP2_PSEAE (Q59638) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 547

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 103 PFASGKPTSREP*PAKTAPPPRSGLPDGDGA 195
           P A  KP +  P PAK   P   G P  DGA
Sbjct: 215 PAAEQKPAAAAPAPAKADTPAPVGAPSRDGA 245

>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3163

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 144 WLGFSRCWLATRERGKNSTTYSVL 73
           W GF RC+LA R   +  T YS L
Sbjct: 370 WKGFDRCFLAYRSDNREHTCYSGL 393


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,260,812
Number of Sequences: 219361
Number of extensions: 726486
Number of successful extensions: 2403
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2396
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)