ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27e13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188347.1| Oryza sativa (japonica cultivar-group), Ozsa809... 111 2e-21
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
3dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
4dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
5gb|AC134933.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
7dbj|AK068601.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
8ref|XM_463438.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
9gb|DQ119665.1| Chlamydomonas reinhardtii central apparatus assoc... 42 1.6
10emb|AJ001834.2|XLRNAIRO1 Xenopus laevis mRNA for an homeobox Iro... 42 1.6
11dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
12dbj|AK107573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
13dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
14ref|NM_202477.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) tran... 40 6.3
15ref|NM_111020.2| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) tran... 40 6.3
16ref|NM_180161.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) tran... 40 6.3
17ref|NM_001035542.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) t... 40 6.3
18ref|NM_014700.2| Homo sapiens RAB11 family interacting protein 3... 40 6.3
19gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
20gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.3
21gb|BC051360.1| Homo sapiens RAB11 family interacting protein 3 (... 40 6.3
22gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
23gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 6.3
24emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.3
25ref|XM_570633.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 6.3
26gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC... 40 6.3
27emb|Z98882.4|HS356B8 Human DNA sequence from clone LA16c-356B8 o... 40 6.3
28emb|AL592436.7| Human DNA sequence from clone RP11-710N8 on chro... 40 6.3
29gb|AY130007.1| Homo sapiens MU-MB-17.148 mRNA, partial cds 40 6.3
30gb|BT009670.1| Arabidopsis thaliana At3g01540 gene, complete cds 40 6.3
31gb|AE006463.1| Homo sapiens 16p13.3 sequence section 2 of 8 40 6.3
32emb|CR622821.1| full-length cDNA clone CS0DF023YO22 of Fetal bra... 40 6.3
33gb|AE012396.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.3
34gb|AC092067.2| Homo sapiens chromosome 19 clone CTB-184G21, comp... 40 6.3
35gb|AF462866.1|AF462866 Arabidopsis thaliana AT3g01540/F4P13_9 mR... 40 6.3
36gb|AY062591.1| Arabidopsis thaliana RNA helicase, DRH1 (At3g0154... 40 6.3
37gb|AF298118.1|AF298118 Zea mays putative transcription factor Go... 40 6.3
38gb|AF428313.1|AF428313 Arabidopsis thaliana AT3g01540/F4P13_9 mR... 40 6.3
39gb|AF395731.1|AF395731 Homo sapiens eferin mRNA, complete cds 40 6.3
40gb|AY050375.1| Arabidopsis thaliana AT3g01540/F4P13_9 mRNA, comp... 40 6.3
41gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.3
42gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.3
43gb|AF318579.1|AF318579 Zea mays putative transcription factor GO... 40 6.3
44emb|AL929088.23| Mouse DNA sequence from clone RP23-360J2 on chr... 40 6.3
45emb|BX823517.1|CNS0A7FC Arabidopsis thaliana Full-length cDNA Co... 40 6.3
46gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, comp... 40 6.3
47gb|AC011555.5|AC011555 Homo sapiens chromosome 19 clone LLNLR-28... 40 6.3
48dbj|AB014565.1| Homo sapiens mRNA for KIAA0665 protein, partial cds 40 6.3
49dbj|AK120971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
50dbj|AK065818.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
51gb|AY108112.1| Zea mays PCO067839 mRNA sequence 40 6.3
52dbj|AP000462.2| Homo sapiens genomic DNA, chromosome 11q clone:B... 40 6.3
53gb|AF038180.1|AF038180 Homo sapiens clone 23794 mRNA sequence 40 6.3
54dbj|AB010259.1| Arabidopsis thaliana mRNA for DRH1, complete cds 40 6.3
55dbj|AB017654.1| Homo sapiens genomic DNA, chromosome 11q23.2, cl... 40 6.3 
>ref|NM_188347.1| Oryza sativa (japonica cultivar-group), Ozsa8098 predicted mRNA
          Length = 1206

 Score =  111 bits (56), Expect = 2e-21
 Identities = 99/112 (88%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                        
Query: 279  cctcctgcttgcgctcgtggtcgagatacatgttgatggccttggctgcagatcacgccg 338
            |||||||||||||||||| |||| | ||| ||||||||||||||| |||||||||| |||
Sbjct: 1129 cctcctgcttgcgctcgtagtcgcggtacgtgttgatggccttgg-tgcagatcactccg 1071

                                                                
Query: 339  gcgccgatgaaggagaagaagcggaggaccgtggtggaggcttcgccggcgg 390
            ||||||| |||| ||| ||||||||||| | ||| |||||| ||||||||||
Sbjct: 1070 gcgccgacgaagcagaggaagcggaggagcttggaggaggcctcgccggcgg 1019
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                       
Query: 279     cctcctgcttgcgctcgtggtcgagatacatgttgatggccttggctgcagatcac 334
               |||||||||||||||||| |||| | ||| ||||||||||||||| ||||||||||
Sbjct: 5807263 cctcctgcttgcgctcgtagtcgcggtacgtgttgatggccttgg-tgcagatcac 5807209



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                      
Query: 336     ccggcgccgatgaaggagaagaagcggaggaccgtggtggaggcttcgccggcgg 390
               |||||||||| |||| ||| ||||||||||| | ||| |||||| ||||||||||
Sbjct: 5807109 ccggcgccgacgaagcagaggaagcggaggagcttggaggaggcctcgccggcgg 5807055



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 263      gccgcggcggacgcctcctcctgct 287
                |||||| ||||||||||||||||||
Sbjct: 32006313 gccgcgccggacgcctcctcctgct 32006337
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>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0016I09
          Length = 148517

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                     
Query: 279   cctcctgcttgcgctcgtggtcgagatacatgttgatggccttggctgcagatcac 334
             |||||||||||||||||| |||| | ||| ||||||||||||||| ||||||||||
Sbjct: 11004 cctcctgcttgcgctcgtagtcgcggtacgtgttgatggccttgg-tgcagatcac 10950



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 336   ccggcgccgatgaaggagaagaagcggaggaccgtggtggaggcttcgccggcgg 390
             |||||||||| |||| ||| ||||||||||| | ||| |||||| ||||||||||
Sbjct: 10850 ccggcgccgacgaagcagaggaagcggaggagcttggaggaggcctcgccggcgg 10796
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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451C06
          Length = 151773

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 51/56 (91%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                      
Query: 279    cctcctgcttgcgctcgtggtcgagatacatgttgatggccttggctgcagatcac 334
              |||||||||||||||||| |||| | ||| ||||||||||||||| ||||||||||
Sbjct: 131965 cctcctgcttgcgctcgtagtcgcggtacgtgttgatggccttgg-tgcagatcac 131911



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 336    ccggcgccgatgaaggagaagaagcggaggaccgtggtggaggcttcgccggcgg 390
              |||||||||| |||| ||| ||||||||||| | ||| |||||| ||||||||||
Sbjct: 131811 ccggcgccgacgaagcagaggaagcggaggagcttggaggaggcctcgccggcgg 131757
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>gb|AC134933.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0579A05,
             complete sequence
          Length = 107407

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 334   cgccggcgccgatgaaggagaagaagcgga 363
             |||||||||||||| ||||||||| |||||
Sbjct: 45236 cgccggcgccgatgcaggagaagacgcgga 45207
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 334      cgccggcgccgatgaaggagaagaagcgga 363
                |||||||||||||| ||||||||| |||||
Sbjct: 20311646 cgccggcgccgatgcaggagaagacgcgga 20311617



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 368      cgtggtggaggcttcgccggcggc 391
                |||||||||||| |||||||||||
Sbjct: 20177067 cgtggtggaggcatcgccggcggc 20177044
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>dbj|AK068601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153B01, full
           insert sequence
          Length = 690

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 334 cgccggcgccgatgaaggagaagaagcgga 363
           |||||||||||||| ||||||||| |||||
Sbjct: 376 cgccggcgccgatgcaggagaagacgcgga 347
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>ref|XM_463438.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 429

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 263 gccgcggcggacgcctcctcctgct 287
           |||||| ||||||||||||||||||
Sbjct: 71  gccgcgccggacgcctcctcctgct 47
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>gb|DQ119665.1| Chlamydomonas reinhardtii central apparatus associated protein
           C1a-34 mRNA, complete cds
          Length = 921

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 263 gccgcggcggacgcctcctcctgct 287
           |||||||||| ||||||||||||||
Sbjct: 602 gccgcggcggccgcctcctcctgct 578
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>emb|AJ001834.2|XLRNAIRO1 Xenopus laevis mRNA for an homeobox Iro protein 1
          Length = 2069

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 242 gctgcgaccgctgctgcttctgccgcggc 270
           |||||| ||||||||||| ||||||||||
Sbjct: 430 gctgcggccgctgctgctgctgccgcggc 402
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>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512C01
          Length = 176261

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 263   gccgcggcggacgcctcctcctgct 287
             |||||| ||||||||||||||||||
Sbjct: 48127 gccgcgccggacgcctcctcctgct 48151
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>dbj|AK107573.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D05, full
           insert sequence
          Length = 1204

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 263 gccgcggcggacgcctcctcctgct 287
           |||||| ||||||||||||||||||
Sbjct: 168 gccgcgccggacgcctcctcctgct 144
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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460E08
          Length = 170021

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 263    gccgcggcggacgcctcctcctgct 287
              |||||| ||||||||||||||||||
Sbjct: 103040 gccgcgccggacgcctcctcctgct 103064
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>ref|NM_202477.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) transcript variant
           AT3G01540.3 mRNA, complete cds
          Length = 2365

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 181 tggctgctaccgctgctgcttctg 204
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>ref|NM_111020.2| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) transcript variant
           AT3G01540.1 mRNA, complete cds
          Length = 2392

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 211 tggctgctaccgctgctgcttctg 234
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>ref|NM_180161.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) transcript variant
           AT3G01540.2 mRNA, complete cds
          Length = 2395

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 211 tggctgctaccgctgctgcttctg 234
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>ref|NM_001035542.1| Arabidopsis thaliana DRH1 AT3G01540 (DRH1) transcript variant
           AT3G01540.4 mRNA, complete cds
          Length = 2289

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 211 tggctgctaccgctgctgcttctg 234
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>ref|NM_014700.2| Homo sapiens RAB11 family interacting protein 3 (class II)
            (RAB11FIP3), mRNA
          Length = 4272

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  cggacatggtggtgggggaa 410
            ||||||||||||||||||||
Sbjct: 3168 cggacatggtggtgggggaa 3187
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>gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_C08,
             complete sequence
          Length = 132017

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 368   cgtggtggaggcttcgccggcggc 391
             |||||||||||| |||||||||||
Sbjct: 65728 cgtggtggaggcatcgccggcggc 65705
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     accgctgctgcttctgccgc 267
               ||||||||||||||||||||
Sbjct: 1083595 accgctgctgcttctgccgc 1083576
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>gb|BC051360.1| Homo sapiens RAB11 family interacting protein 3 (class II), mRNA
            (cDNA clone MGC:59778 IMAGE:6646253), complete cds
          Length = 4272

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  cggacatggtggtgggggaa 410
            ||||||||||||||||||||
Sbjct: 3168 cggacatggtggtgggggaa 3187
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>gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0084P24, complete sequence
          Length = 148784

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 368   cgtggtggaggcttcgccggcggc 391
             |||||||||||| |||||||||||
Sbjct: 15339 cgtggtggaggcatcgccggcggc 15316
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 326     gcagatcacgccggcgccga 345
               ||||||||||||||||||||
Sbjct: 1010922 gcagatcacgccggcgccga 1010903
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 329     gatcacgccggcgccgatga 348
               ||||||||||||||||||||
Sbjct: 1778999 gatcacgccggcgccgatga 1779018
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>ref|XM_570633.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND03920) partial mRNA
          Length = 985

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 accgctgctgcttctgccgc 267
           ||||||||||||||||||||
Sbjct: 697 accgctgctgcttctgccgc 716
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>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence,
             complete sequence
          Length = 105543

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 240   tggctgcgaccgctgctgcttctg 263
             ||||||| ||||||||||||||||
Sbjct: 38132 tggctgctaccgctgctgcttctg 38109
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>emb|Z98882.4|HS356B8 Human DNA sequence from clone LA16c-356B8 on chromosome 16 Contains the
             3' end of the RAB11FIP3 gene for RAB11 family interacting
             protein 3 (class II) and a CpG island, complete sequence
          Length = 36507

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   cggacatggtggtgggggaa 410
             ||||||||||||||||||||
Sbjct: 26380 cggacatggtggtgggggaa 26399
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>emb|AL592436.7| Human DNA sequence from clone RP11-710N8 on chromosome 1 Contains a
             transcription elongation factor B (SIII), polypeptide 1
             (15kDa, elongin C) (TCEB1) pseudogene and a CCR4-NOT
             transcription complex, subunit 7 (CNOT7) pseudogene,
             complete sequence
          Length = 96782

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    ttatcacaatacattacataaaac 78
             |||| |||||||||||||||||||
Sbjct: 61858 ttatgacaatacattacataaaac 61881
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>gb|AY130007.1| Homo sapiens MU-MB-17.148 mRNA, partial cds
          Length = 2368

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  cggacatggtggtgggggaa 410
            ||||||||||||||||||||
Sbjct: 1238 cggacatggtggtgggggaa 1257
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>gb|BT009670.1| Arabidopsis thaliana At3g01540 gene, complete cds
          Length = 1857

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 2   tggctgctaccgctgctgcttctg 25
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>gb|AE006463.1| Homo sapiens 16p13.3 sequence section 2 of 8
          Length = 260418

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    cggacatggtggtgggggaa 410
              ||||||||||||||||||||
Sbjct: 253991 cggacatggtggtgggggaa 254010
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>emb|CR622821.1| full-length cDNA clone CS0DF023YO22 of Fetal brain of Homo sapiens
           (human)
          Length = 1680

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 391 cggacatggtggtgggggaa 410
           ||||||||||||||||||||
Sbjct: 595 cggacatggtggtgggggaa 614
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>gb|AE012396.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 304
            of 460 of the complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  tggaggcttcgccggcggcg 392
            ||||||||||||||||||||
Sbjct: 8782 tggaggcttcgccggcggcg 8763
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>gb|AC092067.2| Homo sapiens chromosome 19 clone CTB-184G21, complete sequence
          Length = 61958

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   cccacctccgaggtcagggc 175
             ||||||||||||||||||||
Sbjct: 27684 cccacctccgaggtcagggc 27665
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>gb|AF462866.1|AF462866 Arabidopsis thaliana AT3g01540/F4P13_9 mRNA sequence
          Length = 2415

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 205 tggctgctaccgctgctgcttctg 228
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>gb|AY062591.1| Arabidopsis thaliana RNA helicase, DRH1 (At3g01540; F4P13.9) mRNA,
           complete cds
          Length = 2264

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 205 tggctgctaccgctgctgcttctg 228
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>gb|AF298118.1|AF298118 Zea mays putative transcription factor Golden2 gene, complete cds
          Length = 5168

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 249  ccgctgctgcttctgccgcggcgg 272
            ||||||||||||| ||||||||||
Sbjct: 3989 ccgctgctgcttcagccgcggcgg 3966
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>gb|AF428313.1|AF428313 Arabidopsis thaliana AT3g01540/F4P13_9 mRNA, complete cds
          Length = 2067

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 107 tggctgctaccgctgctgcttctg 130
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>gb|AF395731.1|AF395731 Homo sapiens eferin mRNA, complete cds
          Length = 4080

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  cggacatggtggtgggggaa 410
            ||||||||||||||||||||
Sbjct: 3217 cggacatggtggtgggggaa 3236
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>gb|AY050375.1| Arabidopsis thaliana AT3g01540/F4P13_9 mRNA, complete cds
          Length = 2165

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 205 tggctgctaccgctgctgcttctg 228
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 373     tggaggcttcgccggcggcg 392
               ||||||||||||||||||||
Sbjct: 1557250 tggaggcttcgccggcggcg 1557269
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 371     ggtggaggcttcgccggcggcgga 394
               ||||||||||||| ||||||||||
Sbjct: 1624689 ggtggaggcttcggcggcggcgga 1624712
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>gb|AF318579.1|AF318579 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds
          Length = 2192

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 249  ccgctgctgcttctgccgcggcgg 272
            ||||||||||||| ||||||||||
Sbjct: 1345 ccgctgctgcttcagccgcggcgg 1322
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>emb|AL929088.23| Mouse DNA sequence from clone RP23-360J2 on chromosome 2, complete
             sequence
          Length = 77156

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 245   gcgaccgctgctgcttctgccgcggcggacgcctcctcct 284
             ||||||||||||||| |||| ||||| || ||| ||||||
Sbjct: 64574 gcgaccgctgctgctgctgctgcggctgaggccgcctcct 64613
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>emb|BX823517.1|CNS0A7FC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS47ZA08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2267

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 181 tggctgctaccgctgctgcttctg 204
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>gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, complete sequence
          Length = 142193

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     atacattacataaaacagaa 82
              ||||||||||||||||||||
Sbjct: 107555 atacattacataaaacagaa 107574
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>gb|AC011555.5|AC011555 Homo sapiens chromosome 19 clone LLNLR-280G7, complete sequence
          Length = 42546

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   cccacctccgaggtcagggc 175
             ||||||||||||||||||||
Sbjct: 17424 cccacctccgaggtcagggc 17405
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>dbj|AB014565.1| Homo sapiens mRNA for KIAA0665 protein, partial cds
          Length = 4080

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 391  cggacatggtggtgggggaa 410
            ||||||||||||||||||||
Sbjct: 3217 cggacatggtggtgggggaa 3236
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>dbj|AK120971.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041G06, full
           insert sequence
          Length = 5151

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 368 cgtggtggaggcttcgccggcggc 391
           |||||||||||| |||||||||||
Sbjct: 209 cgtggtggaggcatcgccggcggc 232
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>dbj|AK065818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042K21, full
           insert sequence
          Length = 3553

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 368 cgtggtggaggcttcgccggcggc 391
           |||||||||||| |||||||||||
Sbjct: 209 cgtggtggaggcatcgccggcggc 232
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>gb|AY108112.1| Zea mays PCO067839 mRNA sequence
          Length = 773

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 382 cgccggcggcggacatggtggtgg 405
           ||||||||| ||||||||||||||
Sbjct: 578 cgccggcggtggacatggtggtgg 601
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>dbj|AP000462.2| Homo sapiens genomic DNA, chromosome 11q clone:B4H11, complete
             sequences
          Length = 114467

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    tacataaaacagaataagtg 88
             ||||||||||||||||||||
Sbjct: 47031 tacataaaacagaataagtg 47050
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>gb|AF038180.1|AF038180 Homo sapiens clone 23794 mRNA sequence
          Length = 1536

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 391 cggacatggtggtgggggaa 410
           ||||||||||||||||||||
Sbjct: 614 cggacatggtggtgggggaa 633
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>dbj|AB010259.1| Arabidopsis thaliana mRNA for DRH1, complete cds
          Length = 1924

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 tggctgcgaccgctgctgcttctg 263
           ||||||| ||||||||||||||||
Sbjct: 9   tggctgctaccgctgctgcttctg 32
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>dbj|AB017654.1| Homo sapiens genomic DNA, chromosome 11q23.2, clone:KB4H11, complete
             sequence
          Length = 170965

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tacataaaacagaataagtg 88
             ||||||||||||||||||||
Sbjct: 67437 tacataaaacagaataagtg 67418


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,925,775
Number of Sequences: 3902068
Number of extensions: 3925775
Number of successful extensions: 103503
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102945
Number of HSP's gapped (non-prelim): 557
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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