ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27d21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VSR3_ARATH (O80977) Vacuolar sorting receptor 3 precursor (AtVSR... 59 2e-09
2VSR4_ARATH (Q56ZQ3) Vacuolar sorting receptor 4 precursor (AtVSR... 59 3e-09
3VSR1_ARATH (P93026) Vacuolar sorting receptor 1 precursor (AtVSR... 58 5e-09
4VSR1_PEA (P93484) Vacuolar sorting receptor 1 precursor (BP-80) ... 58 7e-09
5VSR2_ARATH (O22925) Vacuolar sorting receptor 2 precursor (AtVSR... 55 3e-08
6VSR6_ARATH (Q9FYH7) Vacuolar sorting receptor 6 precursor (AtVSR... 53 2e-07
7VSR7_ARATH (Q8L7E3) Vacuolar sorting receptor 7 precursor (AtVSR... 52 5e-07
8VSR5_ARATH (O64758) Vacuolar sorting receptor 5 precursor (AtVSR... 42 4e-04
9PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A me... 29 3.5
10GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DN... 28 6.0
11MRAW_THETN (Q8R9F9) S-adenosyl-methyltransferase mraW (EC 2.1.1.-) 28 7.8
12CWF19_SCHPO (Q09909) Cell cycle control protein cwf19 28 7.8
13NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 pr... 28 7.8
14HIF1A_ONCMY (Q98SW2) Hypoxia-inducible factor 1 alpha (HIF-1 alp... 28 7.8

>VSR3_ARATH (O80977) Vacuolar sorting receptor 3 precursor (AtVSR3) (Epidermal|
           growth factor receptor-like protein 2a) (AtELP2a)
           (BP80-like protein a') (AtBP80a')
          Length = 628

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 26/35 (74%), Positives = 32/35 (91%)
 Frame = -1

Query: 287 YAVYKYRIRRYMDSEIRAIMAQYMPLENQGDIHSH 183
           Y VYKYR+R+YMDSEIRAIMAQYMPL++Q +I +H
Sbjct: 588 YLVYKYRLRQYMDSEIRAIMAQYMPLDSQPEIPNH 622



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>VSR4_ARATH (Q56ZQ3) Vacuolar sorting receptor 4 precursor (AtVSR4) (Epidermal|
           growth factor receptor-like protein 2b) (AtELP2b)
           (BP80-like protein a) (AtBP80a)
          Length = 628

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 25/35 (71%), Positives = 32/35 (91%)
 Frame = -1

Query: 287 YAVYKYRIRRYMDSEIRAIMAQYMPLENQGDIHSH 183
           Y VYKYR+R+YMDSEIRAIMAQYMPL++Q ++ +H
Sbjct: 588 YLVYKYRLRQYMDSEIRAIMAQYMPLDSQPEVPNH 622



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>VSR1_ARATH (P93026) Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal|
           growth factor receptor-like protein 1) (AtELP1) (AtELP)
           (BP80-like protein b) (AtBP80b) (Spot 3 protein)
          Length = 623

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -1

Query: 293 AGYAVYKYRIRRYMDSEIRAIMAQYMPLENQ 201
           +GYAVYKYRIR YMD+EIR IMAQYMPLE+Q
Sbjct: 582 SGYAVYKYRIRSYMDAEIRGIMAQYMPLESQ 612



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>VSR1_PEA (P93484) Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa|
           proaleurein-binding protein)
          Length = 623

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = -1

Query: 290 GYAVYKYRIRRYMDSEIRAIMAQYMPLENQGDIHSH 183
           G+ VYKYRIR+YMDSEIRAIMAQYMPL++Q +  +H
Sbjct: 582 GFLVYKYRIRQYMDSEIRAIMAQYMPLDSQEEGPNH 617



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>VSR2_ARATH (O22925) Vacuolar sorting receptor 2 precursor (AtVSR2) (Epidermal|
           growth factor receptor-like protein 4) (AtELP4)
           (BP80-like protein c) (AtBP80c)
          Length = 625

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 25/28 (89%), Positives = 26/28 (92%)
 Frame = -1

Query: 287 YAVYKYRIRRYMDSEIRAIMAQYMPLEN 204
           Y VYKYRIR YMDSEIRAIMAQYMPL+N
Sbjct: 586 YTVYKYRIRTYMDSEIRAIMAQYMPLDN 613



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>VSR6_ARATH (Q9FYH7) Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal|
           growth factor receptor-like protein 6) (AtELP6)
           (BP80-like protein d) (AtBP80d)
          Length = 622

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = -1

Query: 290 GYAVYKYRIRRYMDSEIRAIMAQYMPLENQ 201
           GY  YKYR+R YMDSEI AIM+QYMPLE+Q
Sbjct: 572 GYVFYKYRLRSYMDSEIMAIMSQYMPLESQ 601



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>VSR7_ARATH (Q8L7E3) Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal|
           growth factor receptor-like protein 3) (AtELP3)
           (BP80-like protein f) (AtBP80f)
          Length = 625

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = -1

Query: 293 AGYAVYKYRIRRYMDSEIRAIMAQYMPLENQ 201
           AGY  YKYR R YMDSEI  IM+QYMPLE+Q
Sbjct: 581 AGYIFYKYRFRSYMDSEIMTIMSQYMPLESQ 611



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>VSR5_ARATH (O64758) Vacuolar sorting receptor 5 precursor (AtVSR5) (Epidermal|
           growth factor receptor-like protein 5) (AtELP5)
           (BP80-like protein e) (AtBP80e)
          Length = 618

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = -1

Query: 287 YAVYKYRIRRYMDSEIRAIMAQYMPLENQ 201
           Y  YKY ++ YMDSEI +IM+QY+PL++Q
Sbjct: 582 YIFYKYHLQSYMDSEIVSIMSQYIPLDSQ 610



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>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 191 HSHPHQIEM*RAXPHSPVYGTNIFRS 114
           H HPHQI      PHS  +G  + RS
Sbjct: 229 HPHPHQIPHPHPQPHSQPHGHRLLRS 254



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>GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DNA-binding|
           protein xGLI3) (xGLI-3)
          Length = 1569

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 273 VSDPEVHGFRDPRHHGAVHA----PGEPGRHSQSSSP 175
           V  PE H  +  R  G +H     P EPG HSQS SP
Sbjct: 636 VHGPEAHVTKKQR--GDIHPRPPPPREPGSHSQSRSP 670



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>MRAW_THETN (Q8R9F9) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 308

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 SFHKLENAAXLFTSQSGEDDCECLPGSPGAC 220
           +FH LE+     T +  E+ C C PG P  C
Sbjct: 240 TFHSLEDRIVKNTFKKLENPCTCPPGLPCTC 270



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>CWF19_SCHPO (Q09909) Cell cycle control protein cwf19|
          Length = 639

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 270 SDPEVHGFRDPRHHGAVHAPGEPGRHSQSSSP 175
           +D E +  R  RHH + H   + GRH +S  P
Sbjct: 18  TDRETNHSRRHRHHHSRHRESKHGRHDRSERP 49



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>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch|
           4) [Contains: Transforming protein Int-3; Notch 4
           extracellular truncation; Notch 4 intracellular domain]
          Length = 1964

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +2

Query: 101 QSHMPNEKCSFHKLENAAXLFTSQSGEDDCECLPGSPGACTAP*WRGSLNPCTSG 265
           Q+H+  E C      N    +   SG   C C PG  G         S NPC +G
Sbjct: 112 QTHL-EELCPPSFCSNGGHCYVQASGRPQCSCEPGWTGEQCQLRDFCSANPCANG 165



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>HIF1A_ONCMY (Q98SW2) Hypoxia-inducible factor 1 alpha (HIF-1 alpha) (HIF1|
           alpha)
          Length = 766

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 63  TERS*YAVQ*DRYNHTCRTKNVRSINWRMRRCSSHLNL 176
           TERS +        +  RT NV+S  W++  CS H+ +
Sbjct: 165 TERSFFLRMKCTLTNRGRTVNVKSATWKVLHCSDHVRV 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,180,428
Number of Sequences: 219361
Number of extensions: 858382
Number of successful extensions: 2632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2632
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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