ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal27d17 |
|---|---|
| Clone Library Name | barley_pub |
>Y4105_ARATH (Q9M158) Putative protein At4g01050| Length = 466 Score = 37.0 bits (84), Expect = 0.055 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = -2 Query: 552 KISYLKRIGKGSNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRL 382 K+S + + + + ++D + NS++VA+ + GFK+ + + G G +GW S L Sbjct: 190 KLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSL 246
>YDNAA_RICMO (P0A3K3) Hypothetical 14.4 kDa protein in dnaA 5'region| Length = 123 Score = 35.4 bits (80), Expect = 0.16 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = -2 Query: 492 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 382 G S I A + ++G+KNC+ ++ GF G KGW Q+ L Sbjct: 80 GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119
>Y915_RICCN (P0A3K2) Hypothetical protein RC0915| Length = 123 Score = 35.4 bits (80), Expect = 0.16 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = -2 Query: 492 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 382 G S I A + ++G+KNC+ ++ GF G KGW Q+ L Sbjct: 80 GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119
>Y600_RICRI (Q9AKI4) Hypothetical protein RP600 homolog| Length = 123 Score = 35.4 bits (80), Expect = 0.16 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = -2 Query: 492 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 382 G S I A + ++G+KNC+ ++ GF G KGW Q+ L Sbjct: 80 GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119
>Y600_RICPR (Q9ZCV8) Hypothetical protein RP600| Length = 123 Score = 35.0 bits (79), Expect = 0.21 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Frame = -2 Query: 678 GVPQLPSNAKNKIISLPLEELPNKIKGMVRNAKRAEAEIAALKISYLKRIGKGSNIVVMD 499 G+P L + KNK+I L L+ + +N + I KI + I + Sbjct: 36 GIPHLDN--KNKVIFLSLQ--------LNKNFEDNFLSIINEKID--------TAIFFLC 77 Query: 498 SYGDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 382 G S I A + ++G+KNC+ ++ GF G KGW Q+ L Sbjct: 78 RSGYRSFIAANFIANIGYKNCYNISDGFEGNNQDKGWKQNNL 119
>RT31_MOUSE (Q61733) 28S ribosomal protein S31, mitochondrial precursor (S31mt)| (MRP-S31) (Imogen 38) Length = 384 Score = 34.7 bits (78), Expect = 0.27 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +2 Query: 410 PENPPAMTQQFLNPTLLSVLATIFELSPYESMTTMLEPLPILLRYE 547 PE+PP +FL+P L++ + + + P++ TT E L L ++E Sbjct: 129 PEDPPKKRNEFLSPELVAAASAVADSLPFDKQTTKSELLRQLQQHE 174
>AAC6_ENTAE (P50858) Aminoglycoside N(6')-acetyltransferase type 1 (EC| 2.3.1.82) (AAC(6')) Length = 152 Score = 33.1 bits (74), Expect = 0.80 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +1 Query: 322 RNHPRRLDDFYNGKVVGIRPKAALRPPFPAGESAGHDPAVLEPHAVECLGHNL 480 + H + +F +GKV RP A L P GE+ G + P+A EC N+ Sbjct: 32 QEHQSEIAEFLSGKVA--RPAAVLIAVAPDGEALGFAELSIRPYAEECYSGNV 82
>UBA4_YEAST (P38820) E1-like URM1 activator protein (Ubiquitin-like protein| activator 4) Length = 440 Score = 33.1 bits (74), Expect = 0.80 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = -2 Query: 627 LEELPNKIKGMVRNAKRAEAEIAALKISYLKRIGKGSNIVVMDSYGDNSKIVAKTL-NSV 451 + P + ++N + ++ L+ L + K SNIV++ YG++S++ + L + Sbjct: 356 ISHFPEAVNIPIKNLRDMNGDLKKLQ-EKLPSVEKDSNIVILCRYGNDSQLATRLLKDKF 414 Query: 450 GFKNCWVMAGGF 415 GF N + GG+ Sbjct: 415 GFSNVRDVRGGY 426
>GLPE_HAEIN (P44819) Thiosulfate sulfurtransferase glpE (EC 2.8.1.1)| Length = 105 Score = 32.7 bits (73), Expect = 1.0 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = -2 Query: 519 SNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRLGTDS 370 S I+V +G +S+ VA L G+KN + M GGF GW ++ L D+ Sbjct: 57 SPIIVSCYHGVSSRNVATFLVEQGYKNVFSMIGGFD---GWCRAELPIDT 103
>GPR44_HUMAN (Q9Y5Y4) Putative G-protein coupled receptor 44 (Chemoattractant| receptor-homologous molecule expressed on Th2 cells) (CD294 antigen) Length = 395 Score = 32.0 bits (71), Expect = 1.8 Identities = 24/56 (42%), Positives = 28/56 (50%) Frame = +2 Query: 254 RSLRVVLEGVEVDDTVTNLSAAAGITRDGLMTSTTERL*ESVPRRLCAHPFRPENP 421 RSLR VLE V VDD + L A R TS+T R + P LC+ P P P Sbjct: 317 RSLRTVLESVLVDD--SELGGAGSSRR--RRTSSTAR--SASPLALCSRPEEPRGP 366
>KNG1_HUMAN (P01042) Kininogen-1 precursor (Alpha-2-thiol proteinase inhibitor)| [Contains: Kininogen-1 heavy chain; Bradykinin (Kallidin I); Lysyl-bradykinin (Kallidin II); Kininogen-1 light chain; Low molecular weight growth-promoting factor] Length = 644 Score = 31.6 bits (70), Expect = 2.3 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Frame = -1 Query: 667 APLQRKEQDHLSATGRTSEQDKGHGAQREASRGGDRRAEDLVPQEDRQGLQHRR-HGLVR 491 AP Q +E+D G T D GH QR+ + G + E QG H+R HGL Sbjct: 410 APAQDEERDSGKEQGHTRRHDWGHEKQRKHNLGHGHK------HERDQGHGHQRGHGL-- 461 Query: 490 *QLKDCGQDTQQRGVQELLGHGRR 419 G +Q Q LGHG + Sbjct: 462 ------GHGHEQ---QHGLGHGHK 476
>AROA_ARCFU (O28775) Probable 3-phosphoshikimate 1-carboxyvinyltransferase (EC| 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 416 Score = 31.2 bits (69), Expect = 3.0 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Frame = -2 Query: 612 NKIKGMVRNAKRAEAEIAALKISYLKRIGKGSNIVVMDSYGDNSKIVAKT----LNSVGF 445 ++I+G+ +N K E LK + + GKG V+DS+GD+ +A + L V Sbjct: 330 DRIEGIHQNLKALGVESKPLKDGLIIKGGKGEFRGVVDSFGDHRMALAFSLLGLLGEVKC 389 Query: 444 KNCWVMAGGFSG 409 +N V++ F G Sbjct: 390 RNAEVVSVSFPG 401
>RL9_MYCLE (P46385) 50S ribosomal protein L9| Length = 152 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Frame = -1 Query: 643 DHLSATGRTSEQDKG--------HGAQREASRGGDRRAEDLVPQEDRQGLQHRRH 503 DHL + G T E G HG ASRG R+A+++ + + ++ R H Sbjct: 10 DHLGSVGDTVEVKDGYGRNFLLPHGLAIVASRGAQRQADEIRRARETKAMRDREH 64
>FIMB_DICDI (P54680) Fimbrin| Length = 610 Score = 30.0 bits (66), Expect = 6.7 Identities = 21/79 (26%), Positives = 37/79 (46%) Frame = -2 Query: 555 LKISYLKRIGKGSNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRLGT 376 L +S L ++ +G I ++ + + K +A + V N + A G G+ S + T Sbjct: 475 LTLSILWQLMRGHVISILTALSGSGKPIADA-DIVNVANSKLSAAGKKQISGFKDSTIST 533 Query: 375 DSYNLSVVEVIKPSRVIPA 319 L V+E ++P V PA Sbjct: 534 GIPILDVIEAVRPGSVDPA 552
>YOW5_CAEEL (P30651) Hypothetical protein ZK643.5| Length = 487 Score = 29.6 bits (65), Expect = 8.8 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = -1 Query: 634 SATGRTSEQDKGHGAQREASRGGDRRAEDLV-PQEDRQGLQHRRHG 500 S+ TS G R +SR RR +D P+EDR +RR G Sbjct: 254 SSYSSTSSSSDGRSRSRSSSRSDRRRRDDRKRPREDRDRKDYRRDG 299
>DDX20_HUMAN (Q9UHI6) Probable ATP-dependent RNA helicase DDX20 (EC 3.6.1.-)| (DEAD box protein 20) (DEAD box protein DP 103) (Component of gems 3) (Gemin-3) Length = 824 Score = 29.6 bits (65), Expect = 8.8 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = -1 Query: 649 EQDHLSATGRTSEQDKGHGAQREASRGGDRRAEDLVPQEDRQGLQHRRHG 500 E D S + RTS Q KG+ + E S + + P +DR L+ +G Sbjct: 653 ESDSDSYSSRTSSQSKGNKSYLEGSSDNQLKDSESTPVDDRISLEQPPNG 702
>XLNR_ASPNG (O42804) Transcriptional activator xlnR| Length = 875 Score = 29.6 bits (65), Expect = 8.8 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -1 Query: 649 EQDHLSATGRTSEQDKGHGAQREASRGGDRRAEDLVPQEDRQG 521 ++D +A ++ GH Q AS G+R +ED P +D G Sbjct: 95 KKDLAAAAAAATQGSNGHSGQANASLMGERTSEDSRPGQDVNG 137 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,216,649 Number of Sequences: 219361 Number of extensions: 1770569 Number of successful extensions: 6264 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6001 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6253 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
