ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY476807.1| Oryza sativa extracellular calcium sensing recept... 394 e-106
2ref|XM_467599.1| Oryza sativa (japonica cultivar-group), mRNA 387 e-104
3dbj|AK058726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 387 e-104
4gb|AY105162.1| Zea mays PCO100489 mRNA sequence 327 3e-86
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 192 1e-45
6dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 192 1e-45
7gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Ca... 44 0.59
8ref|XM_478422.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
9ref|XM_478421.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
10ref|XM_506371.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 2.3
11gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 42 2.3
12gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 2.3
13gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 2.3
14ref|XM_687214.1| PREDICTED: Danio rerio similar to heparan N-sul... 42 2.3
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
16dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
17dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
18dbj|AK099296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
19dbj|AK071773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
20dbj|AK063798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
21gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.3
22gb|AC158359.2| Mus musculus BAC clone RP23-412H3 from chromosome... 42 2.3
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 9.3
24gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, com... 40 9.3
25gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 9.3
26gb|AF405554.1| Cryptosporidium parvum hypothetical protein gene,... 40 9.3
27emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on ... 40 9.3
28gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 9.3
29ref|XM_967725.1| PREDICTED: Tribolium castaneum similar to sirtu... 40 9.3
30emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on ch... 40 9.3
31gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
32gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence 40 9.3
33gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence 40 9.3
34gb|DQ173295.1| Ictalurus punctatus CC chemokine SCYA121 gene, co... 40 9.3
35gb|AF355575.1| Azospirillum brasilense strain Sp7 beta-hydroxybu... 40 9.3
36gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, compl... 40 9.3
37gb|AC092039.2| Homo sapiens chromosome 3 clone RP11-114P15, comp... 40 9.3
38ref|XM_625875.1| Cryptosporidium parvum Iowa II cryptosporidium ... 40 9.3
39dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
40gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosom... 40 9.3
41gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, comple... 40 9.3
42gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the ... 40 9.3
43gb|AC154464.2| Mus musculus BAC clone RP24-146B1 from 16, comple... 40 9.3
44gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete seq... 40 9.3
45emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chr... 40 9.3
46gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
47gb|AC132131.4| Mus musculus BAC clone RP23-356D16 from 10, compl... 40 9.3

>gb|AY476807.1| Oryza sativa extracellular calcium sensing receptor (CaS) mRNA,
            complete cds
          Length = 1196

 Score =  394 bits (199), Expect = e-106
 Identities = 337/383 (87%)
 Strand = Plus / Minus

                                                                        
Query: 297  ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 356
            ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 1118 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 1059

                                                                        
Query: 357  cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 416
            | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 1058 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 999

                                                                        
Query: 417  atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 476
            | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 998  agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 939

                                                                        
Query: 477  tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 536
            |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 938  tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 879

                                                                        
Query: 537  tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 596
            ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 878  tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 819

                                                                        
Query: 597  tgccctttatcttgttcggaagttcttccagtggcagagagatgatcttgttctttgcgt 656
            ||| ||| |||||| | ||||| |||||||| || | |||||||| ||||||||| ||||
Sbjct: 818  tgctcttcatcttgcttggaagctcttccagcgggatagagatgagcttgttcttcgcgt 759

                                   
Query: 657  tggaggggagctgcggcacgccg 679
            | ||||||||||| |||||||||
Sbjct: 758  tcgaggggagctgtggcacgccg 736



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>ref|XM_467599.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1164

 Score =  387 bits (195), Expect = e-104
 Identities = 336/383 (87%)
 Strand = Plus / Minus

                                                                        
Query: 297  ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 356
            ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 1099 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 1040

                                                                        
Query: 357  cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 416
            | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 1039 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 980

                                                                        
Query: 417  atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 476
            | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 979  agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 920

                                                                        
Query: 477  tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 536
            |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 919  tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 860

                                                                        
Query: 537  tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 596
            ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 859  tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 800

                                                                        
Query: 597  tgccctttatcttgttcggaagttcttccagtggcagagagatgatcttgttctttgcgt 656
            ||| |||  ||||| | ||||| |||||||| || | |||||||| ||||||||| ||||
Sbjct: 799  tgctcttcgtcttgcttggaagctcttccagcgggatagagatgagcttgttcttcgcgt 740

                                   
Query: 657  tggaggggagctgcggcacgccg 679
            | ||||||||||| |||||||||
Sbjct: 739  tcgaggggagctgtggcacgccg 717



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>dbj|AK058726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F04, full
           insert sequence
          Length = 1153

 Score =  387 bits (195), Expect = e-104
 Identities = 336/383 (87%)
 Strand = Plus / Minus

                                                                       
Query: 297 ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 356
           ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 931 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 872

                                                                       
Query: 357 cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 416
           | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 871 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 812

                                                                       
Query: 417 atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 476
           | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 811 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 752

                                                                       
Query: 477 tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 536
           |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 751 tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 692

                                                                       
Query: 537 tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 596
           ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 691 tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 632

                                                                       
Query: 597 tgccctttatcttgttcggaagttcttccagtggcagagagatgatcttgttctttgcgt 656
           ||| |||  ||||| | ||||| |||||||| || | |||||||| ||||||||| ||||
Sbjct: 631 tgctcttcgtcttgcttggaagctcttccagcgggatagagatgagcttgttcttcgcgt 572

                                  
Query: 657 tggaggggagctgcggcacgccg 679
           | ||||||||||| |||||||||
Sbjct: 571 tcgaggggagctgtggcacgccg 549



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>gb|AY105162.1| Zea mays PCO100489 mRNA sequence
          Length = 737

 Score =  327 bits (165), Expect = 3e-86
 Identities = 303/349 (86%)
 Strand = Plus / Plus

                                                                       
Query: 326 atcacccgcgacggcttgatgacttctacaacggaaaggttgtaggaatccgtcccaagg 385
           ||||| || |||||| ||| |||||| || ||||| ||||||||||||||||| || || 
Sbjct: 332 atcacacgtgacggcgtgacgacttcgaccacggataggttgtaggaatccgttccgaga 391

                                                                       
Query: 386 cggctctgcgcccaccctttccggccggagaatccgccggccatgacccagcagttcttg 445
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 392 cggctctgcgcccaccctttccggccagagaagccgccggccatgacccagcagttcttg 451

                                                                       
Query: 446 aaccccacgctgttgagtgtcttggccacaatctttgagttgtcaccgtacgagtccatg 505
           |||||||||||||  || ||||| |||||| |||| | |  ||| | |||||||||||||
Sbjct: 452 aaccccacgctgtccagcgtcttcgccacagtcttggcgacgtcgctgtacgagtccatg 511

                                                                       
Query: 506 acgacgatgttggagcccttgccgatcctcttgaggtacgagatcttcagcgcggcgatc 565
           | || || |||||||||||| |||||| |||||||||| || |||||||| |||||||||
Sbjct: 512 atgatgacgttggagccctttccgatcttcttgaggtaggatatcttcagagcggcgatc 571

                                                                       
Query: 566 tccgcctctgctcgcttcgcgttgcgcaccatgccctttatcttgttcggaagttcttcc 625
           |||||||| |||  |||||||||||||||||||||||| | |||| ||||||| ||||||
Sbjct: 572 tccgcctcggctttcttcgcgttgcgcaccatgcccttcagcttgctcggaaggtcttcc 631

                                                            
Query: 626 agtggcagagagatgatcttgttctttgcgttggaggggagctgcggca 674
           || |||| ||||| || ||||||||| ||||| || || ||||||||||
Sbjct: 632 agcggcacagagacgagcttgttcttcgcgttcgatggcagctgcggca 680



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  192 bits (97), Expect = 1e-45
 Identities = 169/193 (87%)
 Strand = Plus / Plus

                                                                            
Query: 297      ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 356
                ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 30380623 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 30380682

                                                                            
Query: 357      cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 416
                | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 30380683 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 30380742

                                                                            
Query: 417      atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 476
                | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 30380743 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 30380802

                             
Query: 477      tctttgagttgtc 489
                |||| ||| ||||
Sbjct: 30380803 tcttcgagctgtc 30380815



 Score =  161 bits (81), Expect = 4e-36
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                            
Query: 495      acgagtccatgacgacgatgttggagcccttgccgatcctcttgaggtacgagatcttca 554
                |||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 30380912 acgagtccatgatgatgacgttggagcccttgccgatcctcttgaggtaggagatcttca 30380971

                                                                            
Query: 555      gcgcggcgatctccgcctctgctcgcttcgcgttgcgcaccatgccctttatcttgttcg 614
                ||||||||||||||||||| ||| | ||||||||||||||||||| |||  ||||| | |
Sbjct: 30380972 gcgcggcgatctccgcctcggcttgtttcgcgttgcgcaccatgctcttcgtcttgcttg 30381031

                             
Query: 615      gaagttcttccag 627
                |||| ||||||||
Sbjct: 30381032 gaagctcttccag 30381044



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 634      agagatgatcttgttctttgcgttggaggggagctgcggcacgccg 679
                |||||||| ||||||||| ||||| ||||||||||| |||||||||
Sbjct: 30381143 agagatgagcttgttcttcgcgttcgaggggagctgtggcacgccg 30381188



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>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0072H09
          Length = 160541

 Score =  192 bits (97), Expect = 1e-45
 Identities = 169/193 (87%)
 Strand = Plus / Plus

                                                                         
Query: 297   ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 356
             ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 61483 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 61542

                                                                         
Query: 357   cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 416
             | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 61543 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 61602

                                                                         
Query: 417   atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 476
             | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 61603 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 61662

                          
Query: 477   tctttgagttgtc 489
             |||| ||| ||||
Sbjct: 61663 tcttcgagctgtc 61675



 Score =  161 bits (81), Expect = 4e-36
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                         
Query: 495   acgagtccatgacgacgatgttggagcccttgccgatcctcttgaggtacgagatcttca 554
             |||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61772 acgagtccatgatgatgacgttggagcccttgccgatcctcttgaggtaggagatcttca 61831

                                                                         
Query: 555   gcgcggcgatctccgcctctgctcgcttcgcgttgcgcaccatgccctttatcttgttcg 614
             ||||||||||||||||||| ||| | ||||||||||||||||||| |||  ||||| | |
Sbjct: 61832 gcgcggcgatctccgcctcggcttgtttcgcgttgcgcaccatgctcttcgtcttgcttg 61891

                          
Query: 615   gaagttcttccag 627
             |||| ||||||||
Sbjct: 61892 gaagctcttccag 61904



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 634   agagatgatcttgttctttgcgttggaggggagctgcggcacgccg 679
             |||||||| ||||||||| ||||| ||||||||||| |||||||||
Sbjct: 62003 agagatgagcttgttcttcgcgttcgaggggagctgtggcacgccg 62048



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>gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 165414

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 183  gaaattcagtgaaatgattctg 204
            ||||||||||||||||||||||
Sbjct: 9334 gaaattcagtgaaatgattctg 9313



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>ref|XM_478422.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 872

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 406 ccggccggagaatccgccggccatg 430
           |||||||||||||||||| ||||||
Sbjct: 4   ccggccggagaatccgcctgccatg 28



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>ref|XM_478421.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 787

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 406 ccggccggagaatccgccggccatg 430
           |||||||||||||||||| ||||||
Sbjct: 7   ccggccggagaatccgcctgccatg 31



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>ref|XM_506371.1| PREDICTED Oryza sativa (japonica cultivar-group),
           OSJNBa0036M16.111-2 mRNA
          Length = 801

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 406 ccggccggagaatccgccggccatg 430
           |||||||||||||||||| ||||||
Sbjct: 54  ccggccggagaatccgcctgccatg 78



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 450     ccacgctgttgagtgtcttggccac 474
               ||||||||||||| |||||||||||
Sbjct: 5275319 ccacgctgttgagggtcttggccac 5275295



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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 406    ccggccggagaatccgccggc 426
              |||||||||||||||||||||
Sbjct: 531190 ccggccggagaatccgccggc 531210



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 552    tcagcgcggcgatctccgcct 572
              |||||||||||||||||||||
Sbjct: 805196 tcagcgcggcgatctccgcct 805176



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>ref|XM_687214.1| PREDICTED: Danio rerio similar to heparan N-sulfatase (LOC563849),
           mRNA
          Length = 1080

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 607 cttgttcggaagttcttccag 627
           |||||||||||||||||||||
Sbjct: 121 cttgttcggaagttcttccag 141



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 406      ccggccggagaatccgccggccatg 430
                |||||||||||||||||| ||||||
Sbjct: 19881976 ccggccggagaatccgcctgccatg 19882000



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>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 406   ccggccggagaatccgccggccatg 430
             |||||||||||||||||| ||||||
Sbjct: 46626 ccggccggagaatccgcctgccatg 46650



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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 406    ccggccggagaatccgccggccatg 430
              |||||||||||||||||| ||||||
Sbjct: 122135 ccggccggagaatccgcctgccatg 122159



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>dbj|AK099296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138P10, full
           insert sequence
          Length = 787

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 406 ccggccggagaatccgccggccatg 430
           |||||||||||||||||| ||||||
Sbjct: 7   ccggccggagaatccgcctgccatg 31



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>dbj|AK071773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H14, full
           insert sequence
          Length = 800

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 406 ccggccggagaatccgccggccatg 430
           |||||||||||||||||| ||||||
Sbjct: 54  ccggccggagaatccgcctgccatg 78



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>dbj|AK063798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F05, full
           insert sequence
          Length = 872

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 406 ccggccggagaatccgccggccatg 430
           |||||||||||||||||| ||||||
Sbjct: 4   ccggccggagaatccgcctgccatg 28



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 319     cgccggaatcacccgcgacggcttg 343
               |||||| ||||||||||||||||||
Sbjct: 3708033 cgccggcatcacccgcgacggcttg 3708009



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>gb|AC158359.2| Mus musculus BAC clone RP23-412H3 from chromosome 13, complete sequence
          Length = 210045

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 186   attcagtgaaatgattctgca 206
             |||||||||||||||||||||
Sbjct: 60957 attcagtgaaatgattctgca 60937



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 328     cacccgcgacggcttgatga 347
               ||||||||||||||||||||
Sbjct: 1503519 cacccgcgacggcttgatga 1503538



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>gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, complete sequence
          Length = 241585

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   tttttcagttgtccacactg 247
             ||||||||||||||||||||
Sbjct: 92153 tttttcagttgtccacactg 92172



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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    ttacagaacaagagttggaa 185
              ||||||||||||||||||||
Sbjct: 817557 ttacagaacaagagttggaa 817538



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>gb|AF405554.1| Cryptosporidium parvum hypothetical protein gene, partial cds;
             hypothetical protein and polyketide synthase (PKS1) genes,
             complete cds; and aminopeptidase (AP1) gene, partial cds
          Length = 43339

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ttcagagttcagatcatttt 230
             ||||||||||||||||||||
Sbjct: 29453 ttcagagttcagatcatttt 29434



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>emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on chromosome Xq25 Contains the
              3' end of the HS6ST2 gene for heparan sulfate
              6-O-sulfotransferase 2, a novel gene and the 3' end of a
              novel gene, complete sequence
          Length = 184975

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    gaaattcagtgaaatgattc 202
              ||||||||||||||||||||
Sbjct: 142994 gaaattcagtgaaatgattc 142975



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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 554     agcgcggcgatctccgcctc 573
               ||||||||||||||||||||
Sbjct: 2356248 agcgcggcgatctccgcctc 2356229



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>ref|XM_967725.1| PREDICTED: Tribolium castaneum similar to sirtuin 5 (silent mating
           type information regulation 2 homolog) 5 (LOC661574),
           mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 611 ttcggaagttcttccagtgg 630
           ||||||||||||||||||||
Sbjct: 527 ttcggaagttcttccagtgg 508



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>emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on chromosome 4 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tcagtgaaatgattctgcat 207
             ||||||||||||||||||||
Sbjct: 57593 tcagtgaaatgattctgcat 57574



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>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0047M04, complete sequence
          Length = 109523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   agagttggaaattcagtgaa 195
             ||||||||||||||||||||
Sbjct: 32045 agagttggaaattcagtgaa 32026



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>gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence
          Length = 189610

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     taaacccattatctaatttt 78
              ||||||||||||||||||||
Sbjct: 121613 taaacccattatctaatttt 121632



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>gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence
          Length = 184931

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    taaacccattatctaatttt 78
             ||||||||||||||||||||
Sbjct: 28679 taaacccattatctaatttt 28660



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>gb|DQ173295.1| Ictalurus punctatus CC chemokine SCYA121 gene, complete cds
          Length = 2362

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  cagtgaaatgattctgcatt 208
            ||||||||||||||||||||
Sbjct: 1268 cagtgaaatgattctgcatt 1249



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>gb|AF355575.1| Azospirillum brasilense strain Sp7 beta-hydroxybutyrate
           dehydrogenase (hbdH) gene, complete cds
          Length = 786

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 552 tcagcgcggcgatctccgcc 571
           ||||||||||||||||||||
Sbjct: 223 tcagcgcggcgatctccgcc 204



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>gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, complete sequence
          Length = 166659

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 618    gttcttccagtggcagagag 637
              ||||||||||||||||||||
Sbjct: 139300 gttcttccagtggcagagag 139319



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>gb|AC092039.2| Homo sapiens chromosome 3 clone RP11-114P15, complete sequence
          Length = 166560

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 618  gttcttccagtggcagagag 637
            ||||||||||||||||||||
Sbjct: 8726 gttcttccagtggcagagag 8745



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>ref|XM_625875.1| Cryptosporidium parvum Iowa II cryptosporidium polyketide synthase
             (cgd4_2900), partial mRNA
          Length = 40242

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ttcagagttcagatcatttt 230
             ||||||||||||||||||||
Sbjct: 27387 ttcagagttcagatcatttt 27368



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 176      agagttggaaattcagtgaa 195
                ||||||||||||||||||||
Sbjct: 27080992 agagttggaaattcagtgaa 27080973



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>gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosome 5, complete sequence
          Length = 208536

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    tttttcagttgtccacactg 247
              ||||||||||||||||||||
Sbjct: 113825 tttttcagttgtccacactg 113844



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>gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, complete sequence
          Length = 188062

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    aacaagagttggaaattcag 191
              ||||||||||||||||||||
Sbjct: 113988 aacaagagttggaaattcag 114007



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>gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the complete genome
          Length = 10615

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 265  agtcgtcctggagggagtcg 284
            ||||||||||||||||||||
Sbjct: 5427 agtcgtcctggagggagtcg 5408



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>gb|AC154464.2| Mus musculus BAC clone RP24-146B1 from 16, complete sequence
          Length = 143858

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 624    ccagtggcagagagatgatc 643
              ||||||||||||||||||||
Sbjct: 117119 ccagtggcagagagatgatc 117100



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>gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete sequence
          Length = 153357

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    ttacagaacaagagttggaa 185
              ||||||||||||||||||||
Sbjct: 120563 ttacagaacaagagttggaa 120544



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>emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chromosome 2, complete
             sequence
          Length = 170342

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   ctgcatttcttcagagttca 221
             ||||||||||||||||||||
Sbjct: 24010 ctgcatttcttcagagttca 24029



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 176      agagttggaaattcagtgaa 195
                ||||||||||||||||||||
Sbjct: 27408045 agagttggaaattcagtgaa 27408026



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>gb|AC132131.4| Mus musculus BAC clone RP23-356D16 from 10, complete sequence
          Length = 170192

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   gaaatgattctgcatttctt 212
             ||||||||||||||||||||
Sbjct: 47973 gaaatgattctgcatttctt 47992


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,447,790
Number of Sequences: 3902068
Number of extensions: 5447790
Number of successful extensions: 99026
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98541
Number of HSP's gapped (non-prelim): 484
length of query: 679
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 656
effective length of database: 17,143,297,704
effective search space: 11246003293824
effective search space used: 11246003293824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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