ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal27d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC078607.1| Xenopus laevis hypothetical protein LOC446927, mR... 40 1.6
2emb|CR376783.22| Zebrafish DNA sequence from clone DKEY-41N20 in... 38 6.3
3emb|AJ251748.1|DME251748 Drosophila melanogaster mRNA for serine... 38 6.3
4emb|CR861477.1| Human DNA sequence from clone XX-NCIH2171_4G20, ... 38 6.3
5emb|CR856000.1| Human DNA sequence from clone XX-NCIH2171_4H19, ... 38 6.3
6emb|CR812473.1| Human DNA sequence from clone XX-NCIH2171_18L10,... 38 6.3
7emb|CR626938.1| Human DNA sequence from clone XX-NCIH2171_5AA20,... 38 6.3
8ref|NM_176501.1| Drosophila melanogaster Serine protease inhibit... 38 6.3
9gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, comp... 38 6.3
10gb|AY094712.1| Drosophila melanogaster GH14439 full insert cDNA 38 6.3
11ref|NM_080215.2| Drosophila melanogaster Serine protease inhibit... 38 6.3
12gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88... 38 6.3
13gb|AY111704.1| Zea mays CL39004_1 mRNA sequence 38 6.3
14gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46... 38 6.3
15dbj|AP001838.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 6.3
16dbj|AB242197.1| Heliobacterium chlorum orf1, nifI1, nifI2 genes ... 38 6.3
17dbj|AB045371.1| Apple stem pitting virus gene for RNA polymerase... 38 6.3 
>gb|BC078607.1| Xenopus laevis hypothetical protein LOC446927, mRNA (cDNA clone
           IMAGE:6931340), partial cds
          Length = 1181

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  gagctctgcactttggcctt 109
           ||||||||||||||||||||
Sbjct: 806 gagctctgcactttggcctt 787
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>emb|CR376783.22| Zebrafish DNA sequence from clone DKEY-41N20 in linkage group 13,
              complete sequence
          Length = 205064

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 66     ggctgaagtctagtctagt 84
              |||||||||||||||||||
Sbjct: 173171 ggctgaagtctagtctagt 173153
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>emb|AJ251748.1|DME251748 Drosophila melanogaster mRNA for serine protease inhibitor
            (serpin-5), (sp5 gene)
          Length = 1520

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   cactcaaacttggccggct 69
            |||||||||||||||||||
Sbjct: 1283 cactcaaacttggccggct 1265
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>emb|CR861477.1| Human DNA sequence from clone XX-NCIH2171_4G20, complete sequence
          Length = 121004

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 34    atagtatttgaatgccacactca 56
             |||||| ||||||||||||||||
Sbjct: 72995 atagtagttgaatgccacactca 73017
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>emb|CR856000.1| Human DNA sequence from clone XX-NCIH2171_4H19, complete sequence
          Length = 121005

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 34    atagtatttgaatgccacactca 56
             |||||| ||||||||||||||||
Sbjct: 72995 atagtagttgaatgccacactca 73017
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>emb|CR812473.1| Human DNA sequence from clone XX-NCIH2171_18L10, complete sequence
          Length = 128736

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 34    atagtatttgaatgccacactca 56
             |||||| ||||||||||||||||
Sbjct: 76866 atagtagttgaatgccacactca 76888
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>emb|CR626938.1| Human DNA sequence from clone XX-NCIH2171_5AA20, complete sequence
          Length = 111651

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 34    atagtatttgaatgccacactca 56
             |||||| ||||||||||||||||
Sbjct: 26779 atagtagttgaatgccacactca 26757
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>ref|NM_176501.1| Drosophila melanogaster Serine protease inhibitor 5 CG18525-RB,
            transcript variant B (Spn5), mRNA
          Length = 1504

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   cactcaaacttggccggct 69
            |||||||||||||||||||
Sbjct: 1278 cactcaaacttggccggct 1260
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>gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, complete sequence
          Length = 157672

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 34    atagtatttgaatgccacactca 56
             |||||| ||||||||||||||||
Sbjct: 71673 atagtagttgaatgccacactca 71695
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>gb|AY094712.1| Drosophila melanogaster GH14439 full insert cDNA
          Length = 1511

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   cactcaaacttggccggct 69
            |||||||||||||||||||
Sbjct: 1278 cactcaaacttggccggct 1260
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>ref|NM_080215.2| Drosophila melanogaster Serine protease inhibitor 5 CG18525-RA,
            transcript variant A (Spn5), mRNA
          Length = 1507

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   cactcaaacttggccggct 69
            |||||||||||||||||||
Sbjct: 1281 cactcaaacttggccggct 1263
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>gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
              BACR32A03, complete sequence
          Length = 182601

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     cactcaaacttggccggct 69
              |||||||||||||||||||
Sbjct: 113310 cactcaaacttggccggct 113328
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>gb|AY111704.1| Zea mays CL39004_1 mRNA sequence
          Length = 865

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 36/42 (85%)
 Strand = Plus / Plus

                                                     
Query: 92  gctctgcactttggccttgagcgcctnaatgaccgcggagaa 133
           ||||||||||||||| || ||||| | ||| ||||| |||||
Sbjct: 241 gctctgcactttggctttcagcgcttcaataaccgccgagaa 282
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>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the
            complete sequence
          Length = 236375

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 51   cactcaaacttggccggct 69
            |||||||||||||||||||
Sbjct: 6776 cactcaaacttggccggct 6794
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>dbj|AP001838.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-718B20, complete
             sequences
          Length = 211652

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 90    gagctctgcactttggccttgag 112
             ||||||| |||||||||||||||
Sbjct: 69769 gagctcttcactttggccttgag 69747
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>dbj|AB242197.1| Heliobacterium chlorum orf1, nifI1, nifI2 genes for nitrogen
           fixation related protein, GlnB-like protein 1, GlnB-like
           protein 2, complete cds
          Length = 2099

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 98  cactttggccttgagcgcc 116
           |||||||||||||||||||
Sbjct: 925 cactttggccttgagcgcc 907
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>dbj|AB045371.1| Apple stem pitting virus gene for RNA polymerase, complete cds
          Length = 9293

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 95   ctgcactttggccttgagc 113
            |||||||||||||||||||
Sbjct: 6312 ctgcactttggccttgagc 6294


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 608,398
Number of Sequences: 3902068
Number of extensions: 608398
Number of successful extensions: 37896
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37871
Number of HSP's gapped (non-prelim): 25
length of query: 133
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 112
effective length of database: 17,151,101,840
effective search space: 1920923406080
effective search space used: 1920923406080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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