ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26n03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475495.1| Oryza sativa (japonica cultivar-group), predic... 168 1e-38
2dbj|AK065975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
3gb|AY104790.1| Zea mays PCO093811 mRNA sequence 155 2e-34
4gb|BT016764.1| Zea mays clone Contig597 mRNA sequence 139 1e-29
5gb|AY108468.1| Zea mays PCO093809 mRNA sequence 139 1e-29
6gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
7gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
9ref|NM_113623.2| Arabidopsis thaliana unknown protein AT3G27090 ... 90 9e-15
10gb|AY103299.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, com... 90 9e-15
11gb|AY058843.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, com... 90 9e-15
12gb|AY087011.1| Arabidopsis thaliana clone 3049 mRNA, complete se... 90 9e-15
13dbj|AB026649.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 90 9e-15
14emb|AJ001304.1|CPHYPOTHE Citrus paradisi mRNA for hypothetical p... 90 9e-15
15gb|BT014019.1| Lycopersicon esculentum clone 133081F, mRNA sequence 72 2e-09
16emb|AJ491856.1|PSA491856 Pisum sativum mRNA for GDA2 protein (gd... 58 3e-05
17gb|BT014106.1| Lycopersicon esculentum clone 133210F, mRNA sequence 54 5e-04
18emb|X72385.1|DCB2P D.carota mRNA for B2 protein 54 5e-04
19gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
20gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
21dbj|AK106130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
22dbj|AK060122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
23gb|AC140935.1| Gallus gallus BAC clone TAM31-90L17 from chromoso... 42 1.9
24gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, com... 40 7.7
25gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosom... 40 7.7
26gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complet... 40 7.7
27emb|BX901912.10| Zebrafish DNA sequence from clone CH211-212D2 i... 40 7.7
28emb|AL365229.13| Human DNA sequence from clone RP11-723K16 on ch... 40 7.7
29gb|AF523525.1| Gavia immer clone TUMWGi6.1.8 microsatellite sequ... 40 7.7
30gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Can... 40 7.7
31emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, ... 40 7.7
32emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, ... 40 7.7
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
34gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, c... 40 7.7
35dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
36emb|BX004779.16| Zebrafish DNA sequence from clone CH211-14K19 i... 40 7.7
37emb|AJ421479.1| Mus musculus X-inactivation center region; segme... 40 7.7
38emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chr... 40 7.7 
>ref|XM_475495.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 945

 Score =  168 bits (85), Expect = 1e-38
 Identities = 151/173 (87%)
 Strand = Plus / Minus

                                                                       
Query: 392 caaaggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggacca 451
           ||||||||||||||||| |  ||||| ||||||||||||||||| || || || ||||||
Sbjct: 926 caaaggtctagcagtgataaggtctcagctatggagagctcaagacgaaactttggacca 867

                                                                       
Query: 452 tcatagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttcta 511
           || || |||||||||||||| || ||||||||||||||||| | |||||| ||| |||||
Sbjct: 866 tcgtaatggtgcagcactggtctgaaagcatcctcttccaaaggcttgcagagctttcta 807

                                                                
Query: 512 atgcggattctcacctgtgctgggaatctggattcgcctttgcactttttatc 564
           |||||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 806 atgcggatcctcacctgcgctgggaatctagattcacctttacacttcttatc 754
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>dbj|AK065975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045D18, full
            insert sequence
          Length = 1546

 Score =  155 bits (78), Expect = 2e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                        
Query: 392  caaaggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggacca 451
            ||||||||||||||||| |  | ||| ||||||||||||||||| || || || ||||||
Sbjct: 1170 caaaggtctagcagtgataaggcctcagctatggagagctcaagacgaaactttggacca 1111

                                                                        
Query: 452  tcatagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttcta 511
            || || |||||||||||||| || ||||||||||||||||| | |||||| ||| |||||
Sbjct: 1110 tcgtaatggtgcagcactggtctgaaagcatcctcttccaaaggcttgcagagctttcta 1051

                                                          
Query: 512  atgcggattctcacctgtgctgggaatctggattcgcctttgcact 557
            |||||||| |||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 1050 atgcggatcctcacctgcgctgggaatctagattcacctttacact 1005
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>gb|AY104790.1| Zea mays PCO093811 mRNA sequence
          Length = 1604

 Score =  155 bits (78), Expect = 2e-34
 Identities = 147/170 (86%)
 Strand = Plus / Minus

                                                                        
Query: 395  aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 454
            |||||||||||||||| |||||| || |||||||||||||||||||| || || ||||||
Sbjct: 1061 aggtctagcagtgacaatgtctccgcgatggagagctcaaggcggaactttggcccatca 1002

                                                                        
Query: 455  tagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttctaatg 514
            || |||||||  |||||||| || | |||||||||||| | |||||||||| | ||||||
Sbjct: 1001 taatggtgcaaaactggcctgaaggaatcctcttccaacggcttgcacagcttcctaatg 942

                                                              
Query: 515  cggattctcacctgtgctgggaatctggattcgcctttgcactttttatc 564
            | ||| |||||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 941  cagatcctcacctgcgctgggaatctagattcacctttacacttcttatc 892
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>gb|BT016764.1| Zea mays clone Contig597 mRNA sequence
          Length = 1573

 Score =  139 bits (70), Expect = 1e-29
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                        
Query: 395  aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 454
            ||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||
Sbjct: 1067 aggtctagcagggacagggtctccgcgatggagagctcgaggcgaaactttgggccatca 1008

                                                                        
Query: 455  tagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttctaatg 514
            ||||||||||  |||||||| || | |||||||||||| | |||||||||| | |||| |
Sbjct: 1007 tagtggtgcaaaactggcctgaaggaatcctcttccaacggcttgcacagcttcctaacg 948

                                                              
Query: 515  cggattctcacctgtgctgggaatctggattcgcctttgcactttttatc 564
            ||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 947  cggatcctcacctgcgctgggaatctagattcacctttacacttcttatc 898
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>gb|AY108468.1| Zea mays PCO093809 mRNA sequence
          Length = 1259

 Score =  139 bits (70), Expect = 1e-29
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                       
Query: 395 aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 454
           ||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||
Sbjct: 697 aggtctagcagggacagggtctccgcgatggagagctcgaggcgaaactttgggccatca 638

                                                                       
Query: 455 tagtggtgcagcactggcctaaaagcatcctcttccaaggccttgcacagccttctaatg 514
           ||||||||||  |||||||| || | |||||||||||| | |||||||||| | |||| |
Sbjct: 637 tagtggtgcaaaactggcctgaaggaatcctcttccaacggcttgcacagcttcctaacg 578

                                                             
Query: 515 cggattctcacctgtgctgggaatctggattcgcctttgcactttttatc 564
           ||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 577 cggatcctcacctgcgctgggaatctagattcacctttacacttcttatc 528
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>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02,
             complete sequence
          Length = 99795

 Score =  113 bits (57), Expect = 6e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 419   gctatggagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaa 478
             ||||||||||||||||| || || || |||||||| || |||||||||||||| || |||
Sbjct: 10469 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactggtctgaaa 10528

                                                              
Query: 479   gcatcctcttccaaggccttgcacagccttctaatgcggattctcacct 527
             |||||||||||||| | |||||| ||| ||||||||||||| |||||||
Sbjct: 10529 gcatcctcttccaaaggcttgcagagctttctaatgcggatcctcacct 10577



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 524   acctgtgctgggaatctggattcgcctttgcactttttatc 564
             ||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 10657 acctgcgctgggaatctagattcacctttacacttcttatc 10697
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>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04,
             complete sequence
          Length = 122599

 Score =  113 bits (57), Expect = 6e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 419   gctatggagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaa 478
             ||||||||||||||||| || || || |||||||| || |||||||||||||| || |||
Sbjct: 93586 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactggtctgaaa 93645

                                                              
Query: 479   gcatcctcttccaaggccttgcacagccttctaatgcggattctcacct 527
             |||||||||||||| | |||||| ||| ||||||||||||| |||||||
Sbjct: 93646 gcatcctcttccaaaggcttgcagagctttctaatgcggatcctcacct 93694



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 524   acctgtgctgggaatctggattcgcctttgcactttttatc 564
             ||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 93774 acctgcgctgggaatctagattcacctttacacttcttatc 93814
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  113 bits (57), Expect = 6e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                            
Query: 419      gctatggagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaa 478
                ||||||||||||||||| || || || |||||||| || |||||||||||||| || |||
Sbjct: 24407796 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactggtctgaaa 24407855

                                                                 
Query: 479      gcatcctcttccaaggccttgcacagccttctaatgcggattctcacct 527
                |||||||||||||| | |||||| ||| ||||||||||||| |||||||
Sbjct: 24407856 gcatcctcttccaaaggcttgcagagctttctaatgcggatcctcacct 24407904



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 427      gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 486
                |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 29364808 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 29364867

                     
Query: 487      ttcca 491
                 ||||
Sbjct: 29364868 ctcca 29364872



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 524      acctgtgctgggaatctggattcgcctttgcactttttatc 564
                ||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 24407984 acctgcgctgggaatctagattcacctttacacttcttatc 24408024
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>ref|NM_113623.2| Arabidopsis thaliana unknown protein AT3G27090 mRNA, complete cds
          Length = 1437

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 425 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 484
           |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 963 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 904

                            
Query: 485 tcttccaaggccttgca 501
           ||||||||||| |||||
Sbjct: 903 tcttccaaggctttgca 887
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>gb|AY103299.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, complete cds
          Length = 891

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 425 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 484
           |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 836 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 777

                            
Query: 485 tcttccaaggccttgca 501
           ||||||||||| |||||
Sbjct: 776 tcttccaaggctttgca 760
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>gb|AY058843.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, complete cds
          Length = 1437

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 425 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 484
           |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 962 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 903

                            
Query: 485 tcttccaaggccttgca 501
           ||||||||||| |||||
Sbjct: 902 tcttccaaggctttgca 886
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>gb|AY087011.1| Arabidopsis thaliana clone 3049 mRNA, complete sequence
          Length = 1426

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 425 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 484
           |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 956 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 897

                            
Query: 485 tcttccaaggccttgca 501
           ||||||||||| |||||
Sbjct: 896 tcttccaaggctttgca 880
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>dbj|AB026649.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOJ10
          Length = 73686

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 425   gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 484
             |||||||||||||||||||| ||||||||||||||||| || |||||||| || |  |||
Sbjct: 57861 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcctgaaggagtcc 57802

                              
Query: 485   tcttccaaggccttgca 501
             ||||||||||| |||||
Sbjct: 57801 tcttccaaggctttgca 57785
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>emb|AJ001304.1|CPHYPOTHE Citrus paradisi mRNA for hypothetical protein
          Length = 1320

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 114/137 (83%)
 Strand = Plus / Minus

                                                                       
Query: 425 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 484
           ||||||||||| || |||||||||||||| ||||| ||||  || |||||||||||||| 
Sbjct: 930 gagagctcaagacgaaatttaggaccatcgtagtgatgcaagacaggcctaaaagcatct 871

                                                                       
Query: 485 tcttccaaggccttgcacagccttctaatgcggattctcacctgtgctgggaatctggat 544
           |||||||| |||||||||||  |||| |  ||||| || ||||| || || || || |||
Sbjct: 870 tcttccaatgccttgcacagttttcttacccggatccttacctgagcaggaaaccttgat 811

                            
Query: 545 tcgcctttgcacttttt 561
           || ||||| ||||||||
Sbjct: 810 tcccctttacacttttt 794
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>gb|BT014019.1| Lycopersicon esculentum clone 133081F, mRNA sequence
          Length = 1322

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 425 gagagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcc 484
           ||||||||||| || ||||| || ||||||||||| ||||||||||| ||||||||||| 
Sbjct: 978 gagagctcaagacgaaatttgggtccatcatagtgatgcagcactggtctaaaagcatct 919

                   
Query: 485 tcttccaa 492
           || |||||
Sbjct: 918 tcctccaa 911
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>emb|AJ491856.1|PSA491856 Pisum sativum mRNA for GDA2 protein (gda2 gene)
          Length = 1119

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 110/137 (80%)
 Strand = Plus / Minus

                                                                       
Query: 428 agctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctct 487
           ||||||||||| || || ||||||||||| || ||||  |||||||| || | ||| |||
Sbjct: 611 agctcaaggcgaaactttggaccatcataatgatgcaaaactggcctgaatgaatcttct 552

                                                                       
Query: 488 tccaaggccttgcacagccttctaatgcggattctcacctgtgctgggaatctggattcg 547
           ||||  |||||||| |   |||| |  || ||||| ||||| |||||||| || || |||
Sbjct: 551 tccagtgccttgcaaatttttctgacacgaattcttacctgagctgggaaccttgactcg 492

                            
Query: 548 cctttgcactttttatc 564
           |||||||| ||||||||
Sbjct: 491 cctttgcattttttatc 475
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>gb|BT014106.1| Lycopersicon esculentum clone 133210F, mRNA sequence
          Length = 1420

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 428  agctcaaggcggaatttaggaccatcatagtggtgcagcactggcct 474
            |||||||||||||||||||| ||||| || ||||| || ||||||||
Sbjct: 1166 agctcaaggcggaatttagggccatcgtaatggtgaaggactggcct 1120
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>emb|X72385.1|DCB2P D.carota mRNA for B2 protein
          Length = 935

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 427 gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 486
           |||||| |||||||| ||||||||||| |||||||| || | |||||| || | ||||||
Sbjct: 593 gagctccaggcggaacttaggaccatcgtagtggtggagaattggcctgaatgaatcctc 534

              
Query: 487 ttc 489
           |||
Sbjct: 533 ttc 531
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>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                         
Query: 427   gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 486
             |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 12833 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 12892

                  
Query: 487   ttcca 491
              ||||
Sbjct: 12893 ctcca 12897
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>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03,
             complete sequence
          Length = 45160

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 427   gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 486
             |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 28457 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 28398

                  
Query: 487   ttcca 491
              ||||
Sbjct: 28397 ctcca 28393
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>dbj|AK106130.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F10, full
            insert sequence
          Length = 1306

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 427  gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 486
            |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 1009 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 950

                 
Query: 487  ttcca 491
             ||||
Sbjct: 949  ctcca 945
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>dbj|AK060122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G03, full
           insert sequence
          Length = 1187

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 427 gagctcaaggcggaatttaggaccatcatagtggtgcagcactggcctaaaagcatcctc 486
           |||||| |||||||| || || || || |||||||||||||| ||||| || || |||||
Sbjct: 889 gagctcgaggcggaacttggggccgtcgtagtggtgcagcacgggcctgaaggcgtcctc 830

                
Query: 487 ttcca 491
            ||||
Sbjct: 829 ctcca 825
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>gb|AC140935.1| Gallus gallus BAC clone TAM31-90L17 from chromosome ul, complete
             sequence
          Length = 72054

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   aagaaccacagagcaaccaca 354
             |||||||||||||||||||||
Sbjct: 11917 aagaaccacagagcaaccaca 11897
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>gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, complete sequence
          Length = 204704

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 488   tccaaggccttgcacagccttcta 511
             |||||||||||||| |||||||||
Sbjct: 17481 tccaaggccttgcaaagccttcta 17458
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>gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosome 15, complete sequence
          Length = 168423

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 488    tccaaggccttgcacagccttcta 511
              |||||||||||||| |||||||||
Sbjct: 121901 tccaaggccttgcaaagccttcta 121924
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>gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complete sequence
          Length = 117853

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   caaaggtctagcagtgacag 411
             ||||||||||||||||||||
Sbjct: 32397 caaaggtctagcagtgacag 32378
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>emb|BX901912.10| Zebrafish DNA sequence from clone CH211-212D2 in linkage group 1,
             complete sequence
          Length = 140289

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 278   agaacagaacattgtgaaaacatc 301
             |||||| |||||||||||||||||
Sbjct: 99308 agaacataacattgtgaaaacatc 99331
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>emb|AL365229.13| Human DNA sequence from clone RP11-723K16 on chromosome 20 Contains the
             5' end of the CDH4 gene for retinal cadherin 4 type 1
             (R-cadherin), complete sequence
          Length = 121478

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   ggacagaacagaacattgtg 293
             ||||||||||||||||||||
Sbjct: 41536 ggacagaacagaacattgtg 41555
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>gb|AF523525.1| Gavia immer clone TUMWGi6.1.8 microsatellite sequence
          Length = 479

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 agagacaggctcacatctta 192
           ||||||||||||||||||||
Sbjct: 219 agagacaggctcacatctta 238
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>gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75001

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aaatacataaataaggagaa 132
             ||||||||||||||||||||
Sbjct: 15221 aaatacataaataaggagaa 15202
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>emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, complete sequence
          Length = 202570

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ggcaccaacacagagacagg 181
              ||||||||||||||||||||
Sbjct: 123380 ggcaccaacacagagacagg 123361
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>emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, complete sequence
          Length = 172752

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ggcaccaacacagagacagg 181
              ||||||||||||||||||||
Sbjct: 163530 ggcaccaacacagagacagg 163511
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 359     tgttccgaagcagattaggc 378
               ||||||||||||||||||||
Sbjct: 4376314 tgttccgaagcagattaggc 4376333
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>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence
          Length = 184139

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   acaggctcacatcttagagg 196
             ||||||||||||||||||||
Sbjct: 98897 acaggctcacatcttagagg 98916
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>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1506_G02
          Length = 106742

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   tgttccgaagcagattaggc 378
             ||||||||||||||||||||
Sbjct: 16163 tgttccgaagcagattaggc 16182
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>emb|BX004779.16| Zebrafish DNA sequence from clone CH211-14K19 in linkage group 1,
             complete sequence
          Length = 196036

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 278   agaacagaacattgtgaaaacatc 301
             |||||| |||||||||||||||||
Sbjct: 44840 agaacataacattgtgaaaacatc 44863
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>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3
          Length = 252150

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tcatgatgcatcacaacagt 57
              ||||||||||||||||||||
Sbjct: 247239 tcatgatgcatcacaacagt 247220
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>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete
             sequence
          Length = 229724

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    tcatgatgcatcacaacagt 57
             ||||||||||||||||||||
Sbjct: 35009 tcatgatgcatcacaacagt 35028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,013,948
Number of Sequences: 3902068
Number of extensions: 5013948
Number of successful extensions: 99911
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99778
Number of HSP's gapped (non-prelim): 133
length of query: 564
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 541
effective length of database: 17,143,297,704
effective search space: 9274524057864
effective search space used: 9274524057864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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