| Clone Name | rbaal27b18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467368.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1539 Score = 365 bits (184), Expect = 1e-97 Identities = 259/284 (91%) Strand = Plus / Minus Query: 221 gcgagccactggagcagcgccgcgttgaactgctccggcgcctcgtcgtgcgggcagtgc 280 |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| || Sbjct: 1253 gcgagccactcgagcagcgccccgttgaactgctccggcgcctcgtcgtgggggcaatgg 1194 Query: 281 ccggcctgcaggttgacgacggtggagttggcgtagaactcgtggatccgcgccgccttg 340 |||||||| |||||||||||||||| || |||||||| | |||| |||||||||| Sbjct: 1193 ccggcctggaggttgacgacggtggtgtcctggtagaacttcttgatctgcgccgccttc 1134 Query: 341 gccgggccgacccacgggtccaggtccccccacaacagcagcagcgggcacgtcagcttc 400 ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 1133 gccggcccgacccacgggtcgaggtccccccacagcagcagcagcgggcacgacagcttg 1074 Query: 401 cccagcagcttgtcaagcgtgtaccggctctggttcgccatgaaccgcgacatgagcctg 460 ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1073 cccagcagcctgtccagcgtgtaccggctctggttcgccatgaaccgcgacatcagcctg 1014 Query: 461 tagtacacctcgccggcgttcgggtcggccgtcggcgccgtgat 504 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1013 tagtacacctcgccggcgttcgggtccgccgtcggcgccgtgat 970
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 365 bits (184), Expect = 1e-97 Identities = 259/284 (91%) Strand = Plus / Plus Query: 221 gcgagccactggagcagcgccgcgttgaactgctccggcgcctcgtcgtgcgggcagtgc 280 |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| || Sbjct: 29117884 gcgagccactcgagcagcgccccgttgaactgctccggcgcctcgtcgtgggggcaatgg 29117943 Query: 281 ccggcctgcaggttgacgacggtggagttggcgtagaactcgtggatccgcgccgccttg 340 |||||||| |||||||||||||||| || |||||||| | |||| |||||||||| Sbjct: 29117944 ccggcctggaggttgacgacggtggtgtcctggtagaacttcttgatctgcgccgccttc 29118003 Query: 341 gccgggccgacccacgggtccaggtccccccacaacagcagcagcgggcacgtcagcttc 400 ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 29118004 gccggcccgacccacgggtcgaggtccccccacagcagcagcagcgggcacgacagcttg 29118063 Query: 401 cccagcagcttgtcaagcgtgtaccggctctggttcgccatgaaccgcgacatgagcctg 460 ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 29118064 cccagcagcctgtccagcgtgtaccggctctggttcgccatgaaccgcgacatcagcctg 29118123 Query: 461 tagtacacctcgccggcgttcgggtcggccgtcggcgccgtgat 504 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 29118124 tagtacacctcgccggcgttcgggtccgccgtcggcgccgtgat 29118167
>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0724B10 Length = 169143 Score = 365 bits (184), Expect = 1e-97 Identities = 259/284 (91%) Strand = Plus / Plus Query: 221 gcgagccactggagcagcgccgcgttgaactgctccggcgcctcgtcgtgcgggcagtgc 280 |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| || Sbjct: 164049 gcgagccactcgagcagcgccccgttgaactgctccggcgcctcgtcgtgggggcaatgg 164108 Query: 281 ccggcctgcaggttgacgacggtggagttggcgtagaactcgtggatccgcgccgccttg 340 |||||||| |||||||||||||||| || |||||||| | |||| |||||||||| Sbjct: 164109 ccggcctggaggttgacgacggtggtgtcctggtagaacttcttgatctgcgccgccttc 164168 Query: 341 gccgggccgacccacgggtccaggtccccccacaacagcagcagcgggcacgtcagcttc 400 ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 164169 gccggcccgacccacgggtcgaggtccccccacagcagcagcagcgggcacgacagcttg 164228 Query: 401 cccagcagcttgtcaagcgtgtaccggctctggttcgccatgaaccgcgacatgagcctg 460 ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 164229 cccagcagcctgtccagcgtgtaccggctctggttcgccatgaaccgcgacatcagcctg 164288 Query: 461 tagtacacctcgccggcgttcgggtcggccgtcggcgccgtgat 504 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 164289 tagtacacctcgccggcgttcgggtccgccgtcggcgccgtgat 164332
>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0680A05 Length = 168092 Score = 365 bits (184), Expect = 1e-97 Identities = 259/284 (91%) Strand = Plus / Plus Query: 221 gcgagccactggagcagcgccgcgttgaactgctccggcgcctcgtcgtgcgggcagtgc 280 |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| || Sbjct: 7852 gcgagccactcgagcagcgccccgttgaactgctccggcgcctcgtcgtgggggcaatgg 7911 Query: 281 ccggcctgcaggttgacgacggtggagttggcgtagaactcgtggatccgcgccgccttg 340 |||||||| |||||||||||||||| || |||||||| | |||| |||||||||| Sbjct: 7912 ccggcctggaggttgacgacggtggtgtcctggtagaacttcttgatctgcgccgccttc 7971 Query: 341 gccgggccgacccacgggtccaggtccccccacaacagcagcagcgggcacgtcagcttc 400 ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 7972 gccggcccgacccacgggtcgaggtccccccacagcagcagcagcgggcacgacagcttg 8031 Query: 401 cccagcagcttgtcaagcgtgtaccggctctggttcgccatgaaccgcgacatgagcctg 460 ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 8032 cccagcagcctgtccagcgtgtaccggctctggttcgccatgaaccgcgacatcagcctg 8091 Query: 461 tagtacacctcgccggcgttcgggtcggccgtcggcgccgtgat 504 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 8092 tagtacacctcgccggcgttcgggtccgccgtcggcgccgtgat 8135
>dbj|AK063491.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C10, full insert sequence Length = 1540 Score = 365 bits (184), Expect = 1e-97 Identities = 259/284 (91%) Strand = Plus / Minus Query: 221 gcgagccactggagcagcgccgcgttgaactgctccggcgcctcgtcgtgcgggcagtgc 280 |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| || Sbjct: 1253 gcgagccactcgagcagcgccccgttgaactgctccggcgcctcgtcgtgggggcaatgg 1194 Query: 281 ccggcctgcaggttgacgacggtggagttggcgtagaactcgtggatccgcgccgccttg 340 |||||||| |||||||||||||||| || |||||||| | |||| |||||||||| Sbjct: 1193 ccggcctggaggttgacgacggtggtgtcctggtagaacttcttgatctgcgccgccttc 1134 Query: 341 gccgggccgacccacgggtccaggtccccccacaacagcagcagcgggcacgtcagcttc 400 ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct: 1133 gccggcccgacccacgggtcgaggtccccccacagcagcagcagcgggcacgacagcttg 1074 Query: 401 cccagcagcttgtcaagcgtgtaccggctctggttcgccatgaaccgcgacatgagcctg 460 ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1073 cccagcagcctgtccagcgtgtaccggctctggttcgccatgaaccgcgacatcagcctg 1014 Query: 461 tagtacacctcgccggcgttcgggtcggccgtcggcgccgtgat 504 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1013 tagtacacctcgccggcgttcgggtccgccgtcggcgccgtgat 970
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 73.8 bits (37), Expect = 5e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 222 cgagccactggagcagcgccgcgttgaactgctccggcgcctcgt 266 ||||||||||||||||||||||||| | ||||||||||||||||| Sbjct: 614959 cgagccactggagcagcgccgcgttcacctgctccggcgcctcgt 615003
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 tgtcgccggcctcctcctccag 216 |||||||||||||||||||||| Sbjct: 29552552 tgtcgccggcctcctcctccag 29552573
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0627E10 Length = 163388 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 tgtcgccggcctcctcctccag 216 |||||||||||||||||||||| Sbjct: 79224 tgtcgccggcctcctcctccag 79245
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 ttgtcgccggcctcctcctcc 214 ||||||||||||||||||||| Sbjct: 6927 ttgtcgccggcctcctcctcc 6907
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 ttgtcgccggcctcctcctcc 214 ||||||||||||||||||||| Sbjct: 95418 ttgtcgccggcctcctcctcc 95398
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 185 tcggccggcttgtcgccggcctcctcctc 213 |||||| ||| |||||||||||||||||| Sbjct: 1884104 tcggcccgctcgtcgccggcctcctcctc 1884132
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 329 cgcgccgccttggccgggccgaccc 353 ||||||||| ||||||||||||||| Sbjct: 3830347 cgcgccgccatggccgggccgaccc 3830323
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 ttgtcgccggcctcctcctcc 214 ||||||||||||||||||||| Sbjct: 24492745 ttgtcgccggcctcctcctcc 24492725
>ref|XM_482467.1| Oryza sativa (japonica cultivar-group), mRNA Length = 834 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 ggttgacgacggtggagttggcgt 314 ||||||||||||||| |||||||| Sbjct: 280 ggttgacgacggtggcgttggcgt 257
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tcggccggcttgtcgccggc 204 |||||||||||||||||||| Sbjct: 3653567 tcggccggcttgtcgccggc 3653586
>ref|NM_001016231.2| Xenopus tropicalis hypothetical protein LOC548985 (LOC548985), mRNA Length = 3594 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 acgtcagcttccccagcagc 409 |||||||||||||||||||| Sbjct: 398 acgtcagcttccccagcagc 379
>gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's Hospital Oakland Research Institute) complete sequence Length = 262323 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cccacaacagcagcagcggg 388 |||||||||||||||||||| Sbjct: 173174 cccacaacagcagcagcggg 173193
>ref|XM_582488.2| PREDICTED: Bos taurus similar to glutathione S-transferase, theta 3 (LOC506093), mRNA Length = 1413 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cgtcagcttccccagcagct 410 |||||||||||||||||||| Sbjct: 291 cgtcagcttccccagcagct 272
>ref|XM_540093.2| PREDICTED: Canis familiaris similar to CG10670-PA (LOC482980), mRNA Length = 2854 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 tcagcttccccagcagcttg 412 |||||||||||||||||||| Sbjct: 407 tcagcttccccagcagcttg 388
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 cgggtcggccgtcggcgccg 500 |||||||||||||||||||| Sbjct: 722474 cgggtcggccgtcggcgccg 722455
>gb|AC165062.2| Phakopsora pachyrhizi clone JGIAFNA-2121D12, complete sequence Length = 38005 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 cgtcggcgccgtgatcgagc 509 |||||||||||||||||||| Sbjct: 13835 cgtcggcgccgtgatcgagc 13816
>emb|AJ719389.1| Gallus gallus mRNA for hypothetical protein, clone 1n16 Length = 2992 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gtcgccggcctcctcctcca 215 |||||||||||||||||||| Sbjct: 758 gtcgccggcctcctcctcca 739
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 cgccgccttggccgggccga 350 |||||||||||||||||||| Sbjct: 867150 cgccgccttggccgggccga 867131
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gccactggagcagcgccgcg 244 |||||||||||||||||||| Sbjct: 1963802 gccactggagcagcgccgcg 1963821
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 ccggcgttcgggtcggccgtcggc 496 ||||| |||||||||||||||||| Sbjct: 3345413 ccggcattcgggtcggccgtcggc 3345436
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 atccgcgccgccttggccgggccg 349 ||||||||||||| |||||||||| Sbjct: 2193165 atccgcgccgcctgggccgggccg 2193142
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 atccgcgccgccttggccgg 345 |||||||||||||||||||| Sbjct: 2893522 atccgcgccgccttggccgg 2893503
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cgcgttgaactgctccggcg 260 |||||||||||||||||||| Sbjct: 638030 cgcgttgaactgctccggcg 638049
>tpg|BK000460.1| TPA: TPA_exp: Chlamydomonas reinhardtii p72 mRNA, complete cds Length = 2617 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gacgacctggaggctgggct 185 |||||||||||||||||||| Sbjct: 1858 gacgacctggaggctgggct 1877
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 ggttgacgacggtggagttggcgt 314 ||||||||||||||| |||||||| Sbjct: 20344143 ggttgacgacggtggcgttggcgt 20344120
>gb|AF512500.1| Chlamydomonas reinhardtii RIB72 protein mRNA, complete cds Length = 2683 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gacgacctggaggctgggct 185 |||||||||||||||||||| Sbjct: 1896 gacgacctggaggctgggct 1915
>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056L09 Length = 152910 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 ggttgacgacggtggagttggcgt 314 ||||||||||||||| |||||||| Sbjct: 91891 ggttgacgacggtggcgttggcgt 91868
>ref|NM_211012.1| Eremothecium gossypii AFR111Cp (AFR111C), mRNA Length = 1524 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 cgcgttgaactgctccggcg 260 |||||||||||||||||||| Sbjct: 453 cgcgttgaactgctccggcg 434
>emb|CR926283.2| Xenopus tropicalis finished cDNA, clone TEgg040e19 Length = 3594 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 acgtcagcttccccagcagc 409 |||||||||||||||||||| Sbjct: 398 acgtcagcttccccagcagc 379
>dbj|AP001982.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-344F5, complete sequence Length = 137996 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tggtggtgcaagcacaagaa 162 |||||||||||||||||||| Sbjct: 109432 tggtggtgcaagcacaagaa 109451
>dbj|AP001924.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-166D19, complete sequence Length = 190360 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tggtggtgcaagcacaagaa 162 |||||||||||||||||||| Sbjct: 6245 tggtggtgcaagcacaagaa 6264
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tcgccggcctcctcctccag 216 |||||||||||||||||||| Sbjct: 1182384 tcgccggcctcctcctccag 1182403 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,874,731 Number of Sequences: 3902068 Number of extensions: 3874731 Number of successful extensions: 84625 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83303 Number of HSP's gapped (non-prelim): 1317 length of query: 517 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 494 effective length of database: 17,143,297,704 effective search space: 8468789065776 effective search space used: 8468789065776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)