ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal27b10 |
|---|---|
| Clone Library Name | barley_pub |
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/45 (37%), Positives = 30/45 (66%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 +D+ FVHF +R +A+KA+ EI+G+ +E+ +AKP K+ + Sbjct: 374 KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 418
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 41.2 bits (95), Expect = 0.003 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491 RD+ FVHF+ R A++A+K +DG +EV++AKP+ Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 41.2 bits (95), Expect = 0.003 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491 RD+ FVHF+ R A++A+K +DG +EV++AKP+ Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 41.2 bits (95), Expect = 0.003 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491 RD+ FVHF+ R A++A+K +DG +EV++AKP+ Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 41.2 bits (95), Expect = 0.003 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491 RD+ FVHF+ R A++A+K +DG +EV++AKP+ Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 304
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 39.7 bits (91), Expect = 0.008 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 +D+ F+HF ER A+KA++ +++G+ +E+ AKP K+ + Sbjct: 281 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 325
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 39.7 bits (91), Expect = 0.008 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 +D+ F+HF ER A+KA++ +++G+ +E+ AKP K+ + Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 415
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 39.7 bits (91), Expect = 0.008 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 +D+ F+HF ER A+KA++ +++G+ +E+ AKP K+ + Sbjct: 371 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 415
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 38.1 bits (87), Expect = 0.023 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -3 Query: 628 PAKAGHKRD--FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 P + G K +GFV F + +A KA+K E +EIDG+ LEV A+ Sbjct: 572 PKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQ 617
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/62 (35%), Positives = 29/62 (46%) Frame = -3 Query: 646 TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHS 467 T + L + G R F F+ + +A +AVK K ID +EV AK SD S Sbjct: 29 TDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARIEVEFAKTFSDPTVPLS 88 Query: 466 FK 461 FK Sbjct: 89 FK 90
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 V+ + G R FGFV F+ +S L A++ E+DG+ + V+ A+ Sbjct: 39 VITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 34.7 bits (78), Expect = 0.25 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 V+ + G R FGFV F+ S L A++ E+DG+ + V+ A+ Sbjct: 39 VITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 34.7 bits (78), Expect = 0.25 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = -3 Query: 646 TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDH 470 T + L PA R GFV + A +AVK + I + V +AKP++D KP H Sbjct: 33 TDVKLIPA-----RHIGFVGYKSAEDAARAVKYFNRSFIRMSRISVDIAKPIADSKPQH 86
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 34.7 bits (78), Expect = 0.25 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = -3 Query: 622 KAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 461 K GH + FGFV F E + +K + S+++ IDG+ + + P S + PD + Sbjct: 140 KTGHSKGFGFVRFTEYETQVKVM--SQRHMIDGRWCDCKL--PNSKQSPDEPLR 189
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 33.9 bits (76), Expect = 0.43 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 479 G + FGFV F+ A A + E EIDG + + AKP D + Sbjct: 537 GASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQ 582
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 33.5 bits (75), Expect = 0.56 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 461 G R FGFV + + A + YE+DG+ L V+ P +K+ + SF+ Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP-PEKRENSSFR 175
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 33.5 bits (75), Expect = 0.56 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 461 G R FGFV + + A + YE+DG+ L V+ P +K+ + SF+ Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP-PEKRENSSFR 175
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 33.5 bits (75), Expect = 0.56 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 ++ + G R FGFV F + S A++G E+DG+ + V+ A+ Sbjct: 37 IINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 33.1 bits (74), Expect = 0.73 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 ++FGFVH +S A +A++ Y ++G + V M+K Sbjct: 35 KNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSK 71
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 33.1 bits (74), Expect = 0.73 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 17/78 (21%) Frame = -3 Query: 643 KIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMA------------ 500 ++ +P G R F FV F A KA+KG+ EI G+ + V A Sbjct: 141 EVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHA 200 Query: 499 -----KPLSDKKPDHSFK 461 K SD+KP S K Sbjct: 201 SAPGVKKSSDRKPKESGK 218
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 33.1 bits (74), Expect = 0.73 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = -3 Query: 643 KIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMA 500 ++ +P G R FGFV F A KA+KG EI G+ + V A Sbjct: 141 EVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWA 188
>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 657 Score = 33.1 bits (74), Expect = 0.73 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +1 Query: 79 IKKKSYRAKQNTLLNALHQS*QIHHLQKMQ-GKGKTSRADNAGGFLRHRHPAGHHVEEG 252 +K+K + ++ L LHQ+ I LQK++ G + + AGGF R H G H+ +G Sbjct: 225 LKEKIAQLEEQIKLEELHQA-LISKLQKLKTGNETVTSPETAGGFSRTPHWPGQHIPKG 282
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 32.7 bits (73), Expect = 0.95 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 ++ + G R FGFV F + S A++G ++DG+ + V+ A+ Sbjct: 39 IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 32.7 bits (73), Expect = 0.95 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 ++ + G R FGFV F + S A++G ++DG+ + V+ A+ Sbjct: 39 IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp24; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 656 Score = 32.7 bits (73), Expect = 0.95 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +1 Query: 79 IKKKSYRAKQNTLLNALHQS*QIHHLQKMQ-GKGKTSRADNAGGFLRHRHPAGHHVEEG 252 +K+K + ++ L LHQ+ I LQK++ G + D AGG R H G H+ +G Sbjct: 224 LKEKIAQLEEQIKLEELHQA-LISKLQKLKTGNETVTHPDTAGGLSRTPHWPGQHIPKG 281
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 32.7 bits (73), Expect = 0.95 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 14/77 (18%) Frame = +1 Query: 151 HLQKMQGKGKTSRADNAGGFLRHRHPAG-------------HHVEEGVEAAFHQVVAEHS 291 H Q +G S ++GGF R+R P G HH + A Q ++ Sbjct: 1174 HPQHFPPRGFQSNHPHSGGFPRYRPPQGMRYSYHPPPQPSYHHYQRTPYYACPQSFSDWQ 1233 Query: 292 QGGH-QGAPSEPSSSQP 339 + H QG+PS P +SQP Sbjct: 1234 RPLHPQGSPSGPPASQP 1250
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 32.7 bits (73), Expect = 0.95 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 G + FGFVHF E +A +A+ ++GQ E+ +A LS K+ D Sbjct: 162 GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQ--EIYVAPHLSRKERD 207 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDK 482 G + FGFV++ + A+KAV+ E++G+ L V A+ +++ Sbjct: 255 GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 299
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPL 491 R F FV F E A+ A+ + EI G+ + V++A+P+ Sbjct: 11 RGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVARPV 49
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 ++ + G + FGFV F A A + E EIDG + + AKP Sbjct: 602 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 649
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 ++ + G + FGFV F A A + E EIDG + + AKP Sbjct: 601 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 648
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 ++ + G + FGFV F A A + E EIDG + + AKP Sbjct: 599 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 646
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 G + FGFV F+ A A + E EIDG + + AKP Sbjct: 588 GSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKP 628
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -3 Query: 622 KAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKP 476 K+G F FV F + A AV+ + YE DG+ + V + + + P Sbjct: 41 KSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGP 89
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 ++ + G + FGFV F A A + E EIDG + + AKP Sbjct: 596 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 643
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 ++ + G + FGFV F A A + E EIDG + + AKP Sbjct: 600 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 647
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 ++ + G + FGFV F A A + E EIDG + + AKP Sbjct: 599 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 646
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 G + F F+ F R A +A+ G + D +L V AKP Sbjct: 277 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 G + F F+ F R A +A+ G + D +L V AKP Sbjct: 277 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 +G R FGFV++ A KAV E++G+++ V A+ +++ + Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSE 275
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 ++ ++G R FGFV F + + A++ E+DG+V+ V+ A+ Sbjct: 37 IINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSF 464 +G R FGFV + + A + YEIDG+ + V+ A P K+ + SF Sbjct: 125 SGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSF 175
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSF 464 G R FGFV + + A + YEIDG+ + V+ A P K+ + SF Sbjct: 125 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSF 174
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 31.6 bits (70), Expect = 2.1 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 6/77 (7%) Frame = +1 Query: 217 HRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGA------PSEPSSSQPVLVLYHIS*AG*I 378 H HP HH E E H EH + H+ P P +H+ Sbjct: 63 HHHPEEHH-EPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHL------ 115 Query: 379 QGHHHRHHMGLPCSHHK 429 GHHH HH HH+ Sbjct: 116 -GHHHHHHHAAHHHHHE 131 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/74 (27%), Positives = 23/74 (31%) Frame = +1 Query: 205 GFLRHRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQG 384 G H H A HH E H A H + P +H+ Sbjct: 116 GHHHHHHHAAHH-HHHEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHHHHAP 174 Query: 385 HHHRHHMGLPCSHH 426 HHH HH P HH Sbjct: 175 HHHHHHHHAPHHHH 188 Score = 30.4 bits (67), Expect = 4.7 Identities = 21/70 (30%), Positives = 23/70 (32%) Frame = +1 Query: 217 HRHPAGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR 396 H HP HH G +H A H H AP +H HHH Sbjct: 156 HHHPWFHHHHLG----YHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHA---PHHHH 208 Query: 397 HHMGLPCSHH 426 HH P HH Sbjct: 209 HHHHAPHHHH 218
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 31.6 bits (70), Expect = 2.1 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 ++ + G R FGFV F + + A++G ++DG+ + V+ A+ Sbjct: 39 IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 31.6 bits (70), Expect = 2.1 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = -3 Query: 622 KAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 ++G+ R FGFV+F +A AV+ + VL V A+ SD++ + Sbjct: 260 QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -3 Query: 622 KAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQ 521 K GH + FGFV F E + +K + S+++ IDG+ Sbjct: 140 KTGHSKGFGFVRFTEYETQVKVM--SQRHMIDGR 171
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = -3 Query: 622 KAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 K G+ +GFV F + AL+A+ + + ++VS A+P ++ D Sbjct: 114 KTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRD 163
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 31.2 bits (69), Expect = 2.8 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 V+ ++G + +G+V F +A AV + EIDG+++ + ++ P Sbjct: 294 VIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNP 341
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEI-DGQVLEVSMAKP 494 + F FVH E + AL+A++ +E+ G+ L V M++P Sbjct: 35 KQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEI-DGQVLEVSMAKP 494 + F FVH E + AL+A++ +E+ G+ L V M++P Sbjct: 35 KQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 G R FGFV++ A KAV E++G+++ V A+ Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 31.2 bits (69), Expect = 2.8 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSD 485 ++ ++G KR FGFV+F +A KA + + I G +EV A P D Sbjct: 129 IIADKQSGKKRGFGFVYFQNHDAADKAAV-VKFHPIQGHRVEVKKAVPKED 178
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 31.2 bits (69), Expect = 2.8 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -3 Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMA 500 FGFV F +++SA+ A+ + +DG LE+ ++ Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = -3 Query: 646 TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 479 T + + K+G+ R F F+ + A A++ ID +EV+MAK +D + Sbjct: 38 TDVKIVKDKSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMAKSFADPR 93
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = -3 Query: 622 KAGHKRDFGFVHF---AERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSF 464 + G R FGFV AE ++A++A+ G+E G+ L+V+ AKP ++ SF Sbjct: 37 ETGRMRGFGFVELEADAEETAAIEALDGAEWM---GRDLKVNKAKPRENRSGGGSF 89
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 31.2 bits (69), Expect = 2.8 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSD 485 AGH +GFV++ A +A+ + + ++VS A+P S+ Sbjct: 57 AGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 31.2 bits (69), Expect = 2.8 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSD 485 AGH +GFV++ A +A+ + + ++VS A+P S+ Sbjct: 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 30.8 bits (68), Expect = 3.6 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 461 G R FGF+ + A AV+ I+ +EVSMAK +D + K Sbjct: 54 GESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMK 105
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 +G R FGFV++ A KAV E++G+++ V A+ Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQ 267
>HM8_XENLA (P14837) Homeobox protein 8 (XlHbox-8)| Length = 271 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +1 Query: 322 PSSSQPVLVLYHIS*AG*IQGHHHRHHMGLPCSHHKV 432 P S +P++ H HHH HH G+P HH++ Sbjct: 68 PISEEPIVPHLHHH-----HYHHHHHHPGIPHPHHQM 99
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 +G + FGFV + +A KAV IDG+VL V A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 +G + FGFV + +A KAV IDG+VL V A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 +G + FGFV + +A KAV IDG+VL V A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 +G + FGFV + +A KAV IDG+VL V A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 +G + FGFV + +A KAV IDG+VL V A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -3 Query: 619 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 +G + FGFV + +A KAV IDG+VL V A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 275
>OTX1L_BRARE (Q90267) Homeobox protein Otx1l (ZOTX3)| Length = 338 Score = 30.8 bits (68), Expect = 3.6 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 358 IS*AG*IQGHHHRHHMGLPCSHH 426 +S A + GHHH HH+G HH Sbjct: 262 LSTAAAVSGHHHPHHIGQSSGHH 284
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 + FGFV F ER A A+ ++ +DG+ L V++AK Sbjct: 60 KGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAK 96
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 30.4 bits (67), Expect = 4.7 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDK--KPDHSFK 461 R FGFV + A KAV+ +Y+++G++L V+ A ++ +P +F+ Sbjct: 177 RGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFE 227
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 30.4 bits (67), Expect = 4.7 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEID-GQVLEVSMAK 497 G R +GFV F A KA+ ++ Y++ QVL VS A+ Sbjct: 597 GSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQ 637
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 30.4 bits (67), Expect = 4.7 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -3 Query: 637 VLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 ++ + G R FGFV F + S A+ E+DG+ + V+ A+ Sbjct: 37 IINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 30.4 bits (67), Expect = 4.7 Identities = 29/107 (27%), Positives = 35/107 (32%), Gaps = 5/107 (4%) Frame = +1 Query: 124 ALHQS*QIHHLQKMQGKGKTSRADNAGGFLRHRHPAG-----HHVEEGVEAAFHQVVAEH 288 A H S HH G + + PAG HH G + H Sbjct: 224 AHHGSDLSHHSASESTSGHRGQGSHTSPSALSPTPAGVSADEHHNGSGTGGGAGEA-DHH 282 Query: 289 SQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHRHHMGLPCSHHK 429 S H PS P P +H Q HHH H + LP HH+ Sbjct: 283 STTEHHAPPSHPQQQHP----HH-------QQHHHPHLL-LPQQHHQ 317
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 30.4 bits (67), Expect = 4.7 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 R FGFV + A KAV+ +Y+++G++L V+ A P Sbjct: 138 RGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAP 175
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 30.4 bits (67), Expect = 4.7 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 479 R F FV F A A+ + E+ G+ + V++AKP+ K+ Sbjct: 47 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 89
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 30.4 bits (67), Expect = 4.7 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 479 R F FV F A A+ + E+ G+ + V++AKP+ K+ Sbjct: 47 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 89
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 30.4 bits (67), Expect = 4.7 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSFK 461 R F F+ + + A A+ E+ G+ + V++AKP+ K + SFK Sbjct: 47 RGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVRVK--EDSFK 93
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 30.4 bits (67), Expect = 4.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMA 500 + F FV F+ +A AV G + I GQVL++++A Sbjct: 51 KGFAFVQFSNERTARTAVAGEDGRMIAGQVLDINLA 86
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEI-DGQVLEVSMAKP 494 + F FVH E + A++A++ +E+ G+ L V M++P Sbjct: 35 KQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEI-DGQVLEVSMAKP 494 + F FVH E + A++A++ +E+ G+ L V M++P Sbjct: 35 KQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 R FGFV + A KAV+ Y++DG+ L V+ A P Sbjct: 96 RGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP 133
>BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)| Length = 645 Score = 30.0 bits (66), Expect = 6.2 Identities = 19/78 (24%), Positives = 30/78 (38%) Frame = +1 Query: 229 AGHHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHRHHMG 408 AG AA +A S GG +G+P++ Q + + HHH H Sbjct: 66 AGAAAASAAAAAAAAALAAASSGGGRGSPTDSEREQSL-----------VAQHHHHHQQQ 114 Query: 409 LPCSHHKVEEDS*ELLQA 462 HH+ ++ + QA Sbjct: 115 QQHHHHQQQQQQQQHQQA 132
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKP 494 G R FGFV + S A + YE+DG+ L V+ P Sbjct: 129 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 169
>PSBB_EUGGR (P14813) Photosystem II P680 chlorophyll A apoprotein (CP-47| protein) Length = 508 Score = 29.6 bits (65), Expect = 8.0 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -2 Query: 302 WPPWLCSATTWWNAASTPSSTW*PAGWRW 216 W ++ S T W+ +ASTP + P ++W Sbjct: 247 WSAFVVSGTMWYGSASTPIELFGPTRYQW 275
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 479 G + FGFV F+ A+ AVK G+ L V++A+ D+K Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRK 386
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPD 473 G + FGFV + + A KAV+ EI G+++ V A+ +++ + Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = -3 Query: 646 TKIVLPPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 +KI+L + R FGFV F+ + A++G E+DG+ + V+ A+ Sbjct: 16 SKIILD-RETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 29.6 bits (65), Expect = 8.0 Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 21/78 (26%) Frame = +1 Query: 235 HHVEEGVEAAFHQVVAEHSQGGHQ-----------------GAPSEPSSSQPVLVLYHI- 360 HHV H V A H+ GGH APS P+S H+ Sbjct: 121 HHVAAPAHVHAHHVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAPAS--------HLG 172 Query: 361 ---S*AG*IQGHHHRHHM 405 + A I GH H HH+ Sbjct: 173 GSSTAASSIHGHAHAHHV 190
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 29.6 bits (65), Expect = 8.0 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -3 Query: 601 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAK 497 FGFV + + A KA+K + + +DG LEV +++ Sbjct: 768 FGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 802
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -3 Query: 616 GHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 479 G R F F+ F + A V +D +EVSMAK +D + Sbjct: 50 GESRRFAFIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFADPR 95
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -3 Query: 607 RDFGFVHFAERSSALKAVKGSEKYEIDGQVL--EVSMAKP 494 R +G+V F +S A KA++ + EIDG+ + ++S +KP Sbjct: 209 RGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248
>MEOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specific homeobox)| Length = 303 Score = 29.6 bits (65), Expect = 8.0 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Frame = +1 Query: 235 HHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR-HHMGL 411 H +G+ +A H + H P +SS ++ + + G HHR HH Sbjct: 13 HATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHH 72 Query: 412 PCSHHKVEEDS*ELLQA 462 HH ++ + LQ+ Sbjct: 73 HHHHHHHQQQQHQALQS 89
>MEOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2)| Length = 303 Score = 29.6 bits (65), Expect = 8.0 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Frame = +1 Query: 235 HHVEEGVEAAFHQVVAEHSQGGHQGAPSEPSSSQPVLVLYHIS*AG*IQGHHHR-HHMGL 411 H +G+ +A H + H P +SS ++ + + G HHR HH Sbjct: 13 HATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHH 72 Query: 412 PCSHHKVEEDS*ELLQA 462 HH ++ + LQ+ Sbjct: 73 HHHHHHHQQQQHQALQS 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,596,560 Number of Sequences: 219361 Number of extensions: 1878194 Number of successful extensions: 6594 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 6033 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6483 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
