ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YGJ9_YEAST (P53145) Hypothetical GTP-binding protein in SEH1-PRP... 32 1.8
2HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation prote... 32 1.8
3YAWG_SCHPO (Q10190) Hypothetical GTP-binding protein C3F10.16c i... 31 2.3
4GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (G... 30 5.2
5GNL1_MOUSE (P36916) Guanine nucleotide-binding protein-like 1 (G... 30 5.2
6GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (G... 30 5.2
7YDW6_SCHPO (O13912) Hypothetical protein C23C11.06c in chromosome I 30 5.2
8TB182_HUMAN (Q9C0C2) 182 kDa tankyrase 1-binding protein 30 6.8
9ARTM_ARTSA (P17720) Artemin 30 6.8
10MFNA_HALMA (Q5V1B4) L-tyrosine decarboxylase (EC 4.1.1.25) (TDC) 29 8.9

>YGJ9_YEAST (P53145) Hypothetical GTP-binding protein in SEH1-PRP20 intergenic|
           region
          Length = 640

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 428 GQHNLGHANPVNPFVSPETKVMSILQSAAHRRREQLIRFQL*LNLKACPGLVLPNF 261
           G  N+G ++ +N  V    K +S+  +    +  Q I+    + L  CPGLV PNF
Sbjct: 343 GYPNVGKSSTINSLVG--AKKVSVSSTPGKTKHFQTIKLSDSVMLCDCPGLVFPNF 396



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>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)|
          Length = 634

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
 Frame = -3

Query: 570 PVPAQNQAGSST---AVCNRGHR*DPSPNLPQEGHSPLGIVTQQARQNEARPAQLGPR*P 400
           P P    AG+ T   A  +     +PSP  P    +P G     + ++    ++  P  P
Sbjct: 498 PAPEMTPAGTETKPAAPKSSAPATEPSPVAPGTESAPAGPGASSSPKSSVLASETSPIAP 557

Query: 399 GESICQSRNEGDVHSSECSA*APRTTHPFPAVIESEGL--PRACLAQLSP 256
           G     + + G +   E SA    T    P  +ES  L  P A  + ++P
Sbjct: 558 GAETAPAGSSGAITIPESSAVVSTTEGAIPTTLESVPLMQPSANYSSVAP 607



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>YAWG_SCHPO (Q10190) Hypothetical GTP-binding protein C3F10.16c in chromosome I|
          Length = 616

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 428 GQHNLGHANPVNPFVSPETKVMSILQSAAHRRREQLIRFQL*LNLKACPGLVLPNF 261
           G  N+G ++ +N  V   +K +S+  +    +  Q I     ++L  CPGLV P+F
Sbjct: 308 GYPNVGKSSTINALVG--SKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLVFPSF 361



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>GNL1_PANTR (Q7YR35) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein HSR1)
          Length = 430

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -1

Query: 428 GQHNLGHANPVNPFVSPETKVMSILQSAAHRRREQLIRFQL*LNLKACPGLVLPNFLQPT 249
           G  N+G ++ +N  V    KV+S+ ++  H R  Q       + L  CPGL+ P+ L P 
Sbjct: 190 GFPNVGKSSLINGLVG--RKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSLL-PR 246

Query: 248 PLYIRA 231
            L + A
Sbjct: 247 QLQVLA 252



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>GNL1_MOUSE (P36916) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein MMR1)
          Length = 430

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -1

Query: 428 GQHNLGHANPVNPFVSPETKVMSILQSAAHRRREQLIRFQL*LNLKACPGLVLPNFLQPT 249
           G  N+G ++ +N  V    KV+S+ ++  H R  Q       + L  CPGL+ P+ L P 
Sbjct: 190 GFPNVGKSSLINGLVG--RKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSLL-PR 246

Query: 248 PLYIRA 231
            L + A
Sbjct: 247 QLQVLA 252



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>GNL1_HUMAN (P36915) Guanine nucleotide-binding protein-like 1 (GTP-binding|
           protein HSR1)
          Length = 430

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -1

Query: 428 GQHNLGHANPVNPFVSPETKVMSILQSAAHRRREQLIRFQL*LNLKACPGLVLPNFLQPT 249
           G  N+G ++ +N  V    KV+S+ ++  H R  Q       + L  CPGL+ P+ L P 
Sbjct: 190 GFPNVGKSSLINGLVG--RKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSLL-PR 246

Query: 248 PLYIRA 231
            L + A
Sbjct: 247 QLQVLA 252



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>YDW6_SCHPO (O13912) Hypothetical protein C23C11.06c in chromosome I|
          Length = 535

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 455 HSRPDKMKQGQHNLGHANPVNPFVSPETKV 366
           H+ PD  ++ +   G+ N V P++SP+T+V
Sbjct: 281 HTSPDLYEESKDFEGYENDVKPYLSPDTRV 310



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>TB182_HUMAN (Q9C0C2) 182 kDa tankyrase 1-binding protein|
          Length = 1729

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 570 PVPAQNQAGSSTAVCNRGHR*DPSPNLPQEG 478
           P PA   +  S A+ + G R  PSP LP EG
Sbjct: 330 PCPAVTPSAPSAALPDEGSRHTPSPGLPAEG 360



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>ARTM_ARTSA (P17720) Artemin|
          Length = 229

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 215 CKSVYAMDKNIIPSDISSCHIKWETFLNK*LVQLHKLASQEHQ*WGSNSEVTVVVMCRY 39
           C+S  A   N I +D+    I W  FL+  L  LH + SQ    W  +  +  +VM ++
Sbjct: 136 CQSKDAHCSNFIQTDMMDEVIAWNKFLSDCLSNLHCIGSQGMGPWVFDRWLARIVMSKF 194



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>MFNA_HALMA (Q5V1B4) L-tyrosine decarboxylase (EC 4.1.1.25) (TDC)|
          Length = 350

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 423 LALLHFVWPAVLRCLVVNALPEADWVRDPICARG 524
           +A +  +WPA  R     ++  ADW+ D + ARG
Sbjct: 256 VAAMESLWPAGYRQQYETSMANADWLADQLSARG 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,330,023
Number of Sequences: 219361
Number of extensions: 1955317
Number of successful extensions: 4271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4271
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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