ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor 28 7.5
2ARD1H_MOUSE (Q9QY36) N-terminal acetyltransferase complex ARD1 s... 27 9.8
3ARD1H_HUMAN (P41227) N-terminal acetyltransferase complex ARD1 s... 27 9.8

>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -1

Query: 320  GLSVHG-AGRRGDHGDQNRAGM 258
            GL+VHG AG  G+ GDQ R+G+
Sbjct: 1094 GLAVHGRAGPPGEKGDQGRSGI 1115



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>ARD1H_MOUSE (Q9QY36) N-terminal acetyltransferase complex ARD1 subunit homolog|
           A (EC 2.3.1.88) (EC 2.3.1.-)
          Length = 235

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 186 CSPNTYNLTYYYQHGINGIQL 248
           C P  Y + YY+ HG++  QL
Sbjct: 21  CLPENYQMKYYFYHGLSWPQL 41



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>ARD1H_HUMAN (P41227) N-terminal acetyltransferase complex ARD1 subunit homolog|
           A (EC 2.3.1.88) (EC 2.3.1.-)
          Length = 235

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 186 CSPNTYNLTYYYQHGINGIQL 248
           C P  Y + YY+ HG++  QL
Sbjct: 21  CLPENYQMKYYFYHGLSWPQL 41


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,415,855
Number of Sequences: 219361
Number of extensions: 519319
Number of successful extensions: 1443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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