Clone Information

BLAST Search Result

Clone Name	rbaal26l08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alterna...	37	0.032
2	WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1	37	0.054
3	WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7...	36	0.070
4	LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alterna...	35	0.12
5	NCPR_PHAAU (P37116) NADPH--cytochrome P450 reductase (EC 1.6.2.4...	35	0.12
6	ARLY_PROMM (Q7TV86) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	35	0.16
7	NFAC2_HUMAN (Q13469) Nuclear factor of activated T-cells, cytopl...	34	0.27
8	ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-...	33	0.60
9	FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hF...	33	0.60
10	ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor AT...	33	0.78
11	ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor AT...	33	0.78
12	PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)	33	0.78
13	RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...	33	0.78
14	ARLY_SYNPX (Q7TTY1) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	32	1.0
15	MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc fin...	32	1.3
16	ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor AT...	32	1.7
17	RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...	32	1.7
18	ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ...	32	1.7
19	TBX3_MOUSE (P70324) T-box transcription factor TBX3 (T-box prote...	31	2.3
20	NFAC2_MOUSE (Q60591) Nuclear factor of activated T-cells, cytopl...	31	2.3
21	TBX3_RAT (Q7TST9) T-box transcription factor TBX3 (T-box protein 3)	31	2.3
22	CASB_PIG (P39037) Beta-casein precursor	31	2.3
23	ARLY_HALMA (Q5UZ47) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	31	2.3
24	IE18_PRVKA (P33479) Immediate-early protein IE180	31	3.0
25	WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.1...	31	3.0
26	DCP1A_MOUSE (Q91YD3) mRNA decapping enzyme 1A (EC 3.-.-.-) (Tran...	30	3.9
27	EF1D1_ARATH (P48006) Elongation factor 1-delta 1 (EF-1-delta 1) ...	30	3.9
28	RIMK_XANOR (Q5H3K7) Ribosomal protein S6 modification protein	30	3.9
29	NCPR_CATRO (Q05001) NADPH--cytochrome P450 reductase (EC 1.6.2.4...	30	3.9
30	FZD5_MOUSE (Q9EQD0) Frizzled 5 precursor (Frizzled-5) (Fz-5) (mFz5)	30	3.9
31	WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7...	30	5.0
32	ARLY_THET2 (Q72GZ4) Argininosuccinate lyase (EC 4.3.2.1) (Argino...	30	5.0
33	AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathri...	30	5.0
34	MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)	30	5.0
35	CF150_HUMAN (Q8N884) Protein C6orf150	30	5.0
36	BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)	30	5.0
37	YOPE_YEREN (P31492) Outer membrane virulence protein yopE	30	5.0
38	CASZ1_HUMAN (Q86V15) Castor homolog 1 zinc finger protein (Casto...	30	5.0
39	LIVH_SALTY (P0A2J1) High-affinity branched-chain amino acid tran...	30	6.6
40	LIVH_SALTI (P0A2J2) High-affinity branched-chain amino acid tran...	30	6.6
41	LIVH_ECOLI (P0AEX7) High-affinity branched-chain amino acid tran...	30	6.6
42	LIVH_ECO57 (P0AEX8) High-affinity branched-chain amino acid tran...	30	6.6
43	GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)	30	6.6
44	YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5	30	6.6
45	KDSA_ERWCT (Q6D547) 2-dehydro-3-deoxyphosphooctonate aldolase (E...	30	6.6
46	CARB_PSEPK (Q88DU6) Carbamoyl-phosphate synthase large chain (EC...	30	6.6
47	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	30	6.6
48	AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clath...	29	8.6
49	SOCS6_MOUSE (Q9JLY0) Suppressor of cytokine signaling 6 (SOCS-6)...	29	8.6
50	K0319_MOUSE (Q5SZV5) Protein KIAA0319 precursor	29	8.6
51	CNKR1_HUMAN (Q969H4) Connector enhancer of kinase suppressor of ...	29	8.6
52	CARB_PSESM (Q87WP4) Carbamoyl-phosphate synthase large chain (EC...	29	8.6
53	SOCS6_HUMAN (O14544) Suppressor of cytokine signaling 6 (SOCS-6)...	29	8.6

>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 5/141 (3%)
 Frame = +2

Query: 161 PLLSLAAEIRAPLAMP-PINAFFQS----YCPRTLSTPYSMPTYTPATAPQYAPSLHIFF 325
           P +   A IR  +  P P +++  S    Y P T  TP   P YTP+ AP Y PS    +
Sbjct: 391 PRVVTTASIRPSVYQPVPASSYSPSPGANYSP-TPYTPSPAPAYTPSPAPTYTPSPAPTY 449

Query: 326 SVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAAS 505
           S   +  +   P    +   SAA    P+    R P     S     +   ST      +
Sbjct: 450 SPSPAPAYTPSPAPNYTPTPSAAYSGGPSESASRPPWVTDDSFSQKFAPGKSTTTVSKQT 509

Query: 506 PARGILPVPEPSRPVSLPISR 568
             RG  P   P+ P   P++R
Sbjct: 510 LPRG-APAYNPTGPQVTPLAR 529

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>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1|
          Length = 574

 Score = 36.6 bits (83), Expect = 0.054
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
 Frame = +2

Query: 128 PPVMASWAILFPLLSLAA-EIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQYA 304
           PP+ +S A+  P     A   R+  A+PP+    ++  P  + TP S+P   P + P  A
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP-PVPTPPSLPPSAPPSLPPSA 435

Query: 305 PSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMST 484
           P               +LP            + AP AP L  P +  ++  LP  M  + 
Sbjct: 436 P--------------PSLP------------MGAPAAPPL--PPSAPIAPPLPAGMPAAP 467

Query: 485 LLDPAASPARGILPVPEPSRPVS 553
            L PAA PA    P P P+ PV+
Sbjct: 468 PLPPAA-PAPPPAPAPAPAAPVA 489

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>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1243

 Score = 36.2 bits (82), Expect = 0.070
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 12/134 (8%)
 Frame = +2

Query: 194  PLAMPPINAFFQSYCP---RTLSTPYSMPTYTPATAPQYAPSLHIFFSVC--SSLRFETL 358
            P+  PP +     + P   +  S P   PT +P       P   +  S C  SSL   + 
Sbjct: 830  PITSPPCHPSPSPFSPISSQVSSNPSPHPTSSPLPFSSSTPEFPVPLSQCPWSSLPTTSP 889

Query: 359  PLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPR-------SMAMSTLLDPAASPARG 517
            P +  S   S  TL +P  P     S+   ++  P        S+A+ T+     SP+ G
Sbjct: 890  PTF--SPTCSQVTLSSPFFPPCPSTSSFPSTTAAPLLSLASAFSLAVMTVAQSLLSPSPG 947

Query: 518  ILPVPEPSRPVSLP 559
            +L    P+ P  LP
Sbjct: 948  LLSQSPPAPPSPLP 961

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>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher)
          Length = 727

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 5/141 (3%)
 Frame = +2

Query: 161 PLLSLAAEIRAPLAMP-PINAFFQS----YCPRTLSTPYSMPTYTPATAPQYAPSLHIFF 325
           P +   A IR  +  P P + +  S    Y P T  TP   P YTP+ AP Y PS    +
Sbjct: 395 PRVVTTASIRPSVYQPVPASTYSPSPGANYSP-TPYTPSPAPAYTPSPAPAYTPSPVPTY 453

Query: 326 SVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAAS 505
           +   +  +   P    + A S A    P  P  R P     S     +   ST      +
Sbjct: 454 TPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASRPPWVTDDSFSQKFAPGKSTTSISKQT 513

Query: 506 PARGILPVPEPSRPVSLPISR 568
             RG  P   P+ P   P++R
Sbjct: 514 LPRG-GPAYTPAGPQVPPLAR 533

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>NCPR_PHAAU (P37116) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)|
           (P450R)
          Length = 690

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
 Frame = +2

Query: 164 LLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQY-----------APS 310
           L+ + AE   P A PP+  FF +  PR     YS+ + +P  APQ             P+
Sbjct: 440 LVEVMAEF--PSAKPPLGVFFAAIAPRLQPRYYSISS-SPRFAPQRVHVTCALVYGPTPT 496

Query: 311 LHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRL 448
             I   VCS+        W ++   S  +    +API  +PS  +L
Sbjct: 497 GRIHKGVCST--------WMKNAIPSEKSQDCSSAPIFIRPSNFKL 534

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>ARLY_PROMM (Q7TV86) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 470

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = +1

Query: 76  VARLGEVVDELDGGRDGASGDGVLGDLVPFVVARGRDQGAACDASNQRVFPVILSADPFH 255
           +A LG V  +L  GR  +  D V  DL  ++  R  D     D   +R    +L+    H
Sbjct: 101 IALLGPVGKKLHTGR--SRNDQVGTDLRLWLRRRLDD----LDCELERFQHALLTQAESH 154

Query: 256 --SILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGHPAGA 408
             +++  Y H   + P+C  LAH L   +E+  RD   L+ V G +   P GA
Sbjct: 155 RQTLIPGYTHLQRAQPLC--LAHHLLAYIEMIQRDRDRLKDVRGRVNISPLGA 205

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>NFAC2_HUMAN (Q13469) Nuclear factor of activated T-cells, cytoplasmic 2 (T cell|
           transcription factor NFAT1) (NFAT pre-existing subunit)
           (NF-ATp)
          Length = 925

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
 Frame = +2

Query: 161 PLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMP----TYTPATAPQYAPSLHIFFS 328
           PL  +AA  R  L +P    + +  C    S+  S      T++P T+P  +P+      
Sbjct: 141 PLAGVAASPRFTLPVPGFEGYREPLCLSPASSGSSASFISDTFSPYTSPCVSPNNGGPDD 200

Query: 329 VCSSLRFETLPLW---RQSKASSAATLQAPTAPILR-----KPSTVRLSSGLPRSMAMS- 481
           +C   +F+ +P     R S   S  T  A  + + R     +P++   S G  R  + + 
Sbjct: 201 LCP--QFQNIPAHYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRHSCAE 258

Query: 482 --TLLDPAASPARGILPVPEPSRPVS 553
               L P ASP R   P P+PS  V+
Sbjct: 259 ALVALPPGASPQRSRSPSPQPSSHVA 284

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>ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1)
          Length = 487

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
 Frame = +2

Query: 356 LPLWRQSKASSA----ATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGIL 523
           +PL + ++ +SA    A+LQ P   +    S+V +   +P S   ST++  A S  R I+
Sbjct: 133 IPLAQTAQPTSAIVRPASLQVPNVLLTSSDSSVIIQQAVP-SPTSSTVITQAPSSNRPIV 191

Query: 524 PVPEP-----------SRPVSLPIS 565
           PVP P           + PV++P S
Sbjct: 192 PVPGPFPLLLHLPNGQTMPVAIPAS 216

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>FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hFz5) (FzE5)|
          Length = 585

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 30/93 (32%), Positives = 37/93 (39%)
 Frame = +2

Query: 275 YTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSS 454
           YTP   P Y   L    SVC   +    PL RQ   +    +     P+L + + V L  
Sbjct: 90  YTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEV-LCM 148

Query: 455 GLPRSMAMSTLLDPAASPARGILPVPEPSRPVS 553
              RS A  T   P   PA+  LP P P  P S
Sbjct: 149 DYNRSEA--TTAPPRPFPAKPTLPGP-PGAPAS 178

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>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1) (MXBP protein)
          Length = 487

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
 Frame = +2

Query: 356 LPLWRQSKASSA----ATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGIL 523
           +PL + ++ +SA    A+LQ P   +    S+V +   +P S   ST++  A S  R I+
Sbjct: 133 VPLAQTAQPTSAIVRPASLQVPNVLLTSSDSSVIIQQAVP-SPTSSTVITQAPSSNRPIV 191

Query: 524 PVPEP-----------SRPVSLPIS 565
           PVP P           + PV++P S
Sbjct: 192 PVPGPFPLLLHLPNGQTMPVAIPAS 216

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>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1) (HB16)
          Length = 487

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
 Frame = +2

Query: 356 LPLWRQSKASSA----ATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGIL 523
           +PL + ++ +SA    A+LQ P   +    S+V +   +P S   ST++  A S  R I+
Sbjct: 133 VPLAQTAQPTSAIVRPASLQVPNVLLTSSDSSVIIQQAVP-SPTSSTVITQAPSSNRPIV 191

Query: 524 PVPEP-----------SRPVSLPIS 565
           PVP P           + PV++P S
Sbjct: 192 PVPGPFPLLLHLPNGQTMPVAIPAS 216

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>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +2

Query: 377  KASSAATLQAPTAPILRKPSTVRLSSGLPR------SMAMSTLLDPAASPARGILPVPEP 538
            K  ++ T   PT  ++ K STV + S  P       S+  S+ LD  A P+    P P P
Sbjct: 2275 KEPASETPAVPTPRVVSKTSTVSMPSSAPALTSKVFSLFRSSSLDSPAQPSPPSPPPPPP 2334

Query: 539  SRPVSLP 559
              P  LP
Sbjct: 2335 PPPPPLP 2341

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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
 Frame = +2

Query: 209  PINAFFQSYCPRTLSTPYSMPTYTPA------TAPQYAPSLHIFFSVCSSLRFETLPLWR 370
            P +  ++ Y P +     S PTY+P       T+PQY+P+    +S  S     + P + 
Sbjct: 1709 PTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPT-SPQYSPSSPTYTPSSPTYN 1767

Query: 371  QSKASSAATLQ-APTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRP 547
             +   + ++ Q +PT+P    P++   +   P+    S    P+ +   G      PS P
Sbjct: 1768 PTSPRAFSSPQYSPTSPTY-SPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPSSP 1826

Query: 548  VSLPIS 565
               P S
Sbjct: 1827 TYSPSS 1832

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>ARLY_SYNPX (Q7TTY1) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 471

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
 Frame = +1

Query: 76  VARLGEVVDELDGGRDGASGDGVLGDLVPFVVARGRDQGAACDASNQRVFPVILSADPFH 255
           +A +G V  +L  GR   S +  +G  +   + R  D+    D   QR+   +L     H
Sbjct: 101 IALVGSVGKKLHTGR---SRNDQVGTDLRLWLRRRLDE---IDGDLQRLQRALLDQADRH 154

Query: 256 --SILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGHPAGA 408
             +++  Y H   + P+C  LAH L   +E+  RD   L  V G +   P GA
Sbjct: 155 QSTMIPGYTHLQRAQPLC--LAHHLLAYIEMLQRDRQRLGDVRGRVNICPLGA 205

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>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type|
           coiled-coil domain protein 1)
          Length = 970

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
 Frame = +2

Query: 206 PPINAFFQSYCPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLP-LWRQSKA 382
           PP+ A  ++      S P S+PT  PA+ P+ AP       V SS     LP L  + +A
Sbjct: 554 PPLPAVIRN----APSRPPSLPTPRPASQPRKAP-------VISST--PKLPALAAREEA 600

Query: 383 SSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASP-ARGILPVPEP 538
           S++  LQ P AP  RKP+   + +   R   +   L P+  P ++    VP P
Sbjct: 601 STSRLLQPPEAP--RKPANTLVKTA-SRPAPLVQQLSPSLLPNSKSPREVPSP 650

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>ATF2_CHICK (O93602) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2)
          Length = 487

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
 Frame = +2

Query: 392 ATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEP----------- 538
           A+LQ P   +    S+V +   +P S   ST++  A S  R I+PVP P           
Sbjct: 149 ASLQVPNVLLTSSDSSVIIQQAIP-SPTSSTVITQAPSSNRPIVPVPGPFPLLLHLPNGQ 207

Query: 539 SRPVSLPIS 565
           + PV++P S
Sbjct: 208 TMPVAIPAS 216

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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
 Frame = +2

Query: 131  PVMASWAILFPLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQYAPS 310
            P   S++   P  S  +   +P + P  +A   SY P + S   + P+Y+P T+P Y+P+
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTS-PSYSATSPSYSPTSPSYSPTSPSYSP-TSPSYSPT 1637

Query: 311  LHIFFSVCSSLRFETLPLWRQSKASSAAT--LQAPTAPILRKPSTVRLSSGLPRSMAMST 484
                +S  S     T P +  +  S + T    +PT+P    P++   S   P     S 
Sbjct: 1638 -SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSP 1695

Query: 485  LLDPAASPARGILPVPEPSRPVSLPIS 565
               P +       P   P+ P   P S
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPSYSPTS 1722

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>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 25/95 (26%), Positives = 38/95 (40%)
 Frame = +2

Query: 263  SMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTV 442
            S+P +TPA     +P  ++       L   T+P           +   PT+ +  KPS+ 
Sbjct: 3141 SLPGFTPANTALTSPKPNLM-----GLPSTTVP-----------SPGLPTSGLPNKPSSA 3184

Query: 443  RLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRP 547
             LSS  P    M+    P   P +   PV +P  P
Sbjct: 3185 SLSSPTPAQATMAMAPQPPPQPQQPQPPVQQPPPP 3219

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>TBX3_MOUSE (P70324) T-box transcription factor TBX3 (T-box protein 3)|
          Length = 741

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 5/166 (3%)
 Frame = +2

Query: 98   LMNSTAVAMAP-----PVMASWAILFPLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPY 262
            ++ S  +AM+P     P   ++       S AA   +    P +N    S  PR   +PY
Sbjct: 584  VLASQGLAMSPFGSLFPYPYTYMAAAAAASTAAASSSVHRHPFLN--LNSMRPRLRYSPY 641

Query: 263  SMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTV 442
            S+P   P +               SSL    LP    S AS+A  L    A +   P++V
Sbjct: 642  SIPVPVPDS---------------SSLLATALP----SMASAAGPLDGKAAALAASPASV 682

Query: 443  RLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVSLPISRLALG 580
             + SG   +   STL   + S +  +    E +      I RL  G
Sbjct: 683  AVDSGSELNSRSSTLSSGSVSLSPKLCSEKEAATNELQSIQRLVSG 728

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>NFAC2_MOUSE (Q60591) Nuclear factor of activated T-cells, cytoplasmic 2 (T cell|
           transcription factor NFAT1) (NFAT pre-existing subunit)
           (NF-ATp)
          Length = 1064

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
 Frame = +2

Query: 164 LLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMP----TYTPATAPQYAPSLHIFFSV 331
           L  +AA  R  L +P    + +  C    S+  S      T++P T+P  +P+      +
Sbjct: 144 LAGVAASPRFTLPVPGYEGYREPLCLSPASSGSSASFISDTFSPYTSPCVSPNNAGPDDL 203

Query: 332 CSSLRFETLPLW---RQSKASSAATLQAPTAPILR-----KPSTVRLSSGLPRSMAMSTL 487
           C   +F+ +P     R S   S  T  A  + + R     +P++   S G  R  + +  
Sbjct: 204 CP--QFQNIPAHYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRHSCAEA 261

Query: 488 LD---PAASPARGILPVPEPSRPVS 553
           L    PAASP R   P P+PS  V+
Sbjct: 262 LVAPLPAASPQRSRSPSPQPSPHVA 286

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>TBX3_RAT (Q7TST9) T-box transcription factor TBX3 (T-box protein 3)|
          Length = 743

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 31/114 (27%), Positives = 45/114 (39%)
 Frame = +2

Query: 239 PRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAP 418
           PR   +PYS+P   P +               SSL    LP    S AS+A  L   +A 
Sbjct: 636 PRLRYSPYSIPVPVPDS---------------SSLLATALP----SMASAAGPLDGKSAV 676

Query: 419 ILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVSLPISRLALG 580
           +   P++V + SG   +   STL   + S +  +    E +      I RL  G
Sbjct: 677 LAASPASVAVDSGSELNSRSSTLSSGSVSLSPKLCSEKEAATSELQSIQRLVSG 730

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>CASB_PIG (P39037) Beta-casein precursor|
          Length = 232

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 398 LQAPTAPILRKPSTVRLSSGLP---RSMAMSTLL---DPAASPARGILPVPEPSRPVSLP 559
           L  P A +L  P  V     +P   R M    LL   DP   P +G  PVP+P  PV  P
Sbjct: 177 LSLPQAKVLPVPQQV-----VPFPQRDMPFQALLLYQDPLLGPLQGFYPVPQPVAPVYNP 231

Query: 560 I 562
           +
Sbjct: 232 V 232

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>ARLY_HALMA (Q5UZ47) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 499

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 391 GHPAGADGADLEEAVDGAVEQRVAEVDGDVH 483
           GH A  DG D+ EA++ AV +RV    G +H
Sbjct: 83  GHDALPDGEDVHEAIESAVIERVGPDGGKMH 113

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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 407 PTAPILRK--PSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRP 547
           P AP+ R   P +    +  PR  A S     AASPA    P PEP+RP
Sbjct: 407 PGAPLARAGPPPSPPAPAAAPRPSASSASSSAAASPA----PAPEPARP 451

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>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1222

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
 Frame = +2

Query: 185  IRAPLAMP-PINAFFQSYCPRTLSTPYSMPTYTPAT-APQYAPSLHIFFSVCSSLRFETL 358
            I +P   P P +    + CP+  S+   +P+ + A+  P  +PSL       S L F   
Sbjct: 824  ITSPSCHPYPFSQVSSNPCPQAPSS--LLPSSSGASQVPFPSPSL----PTSSPLPFS-- 875

Query: 359  PLWRQSKASSAATLQAPTAPILRKPSTVR---LSSGLPRSMAMSTLLDPAASPARGILPV 529
            P + Q     A+    P+ P L  PST     LS     S+A+ T+     SP+ G+L  
Sbjct: 876  PSYPQVPLHPASLPTCPSPPPL--PSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQ 933

Query: 530  PEPSRPVSLPISRLALGS 583
              P+ P  LP   L L S
Sbjct: 934  SPPAPPGPLPSMPLPLAS 951

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>DCP1A_MOUSE (Q91YD3) mRNA decapping enzyme 1A (EC 3.-.-.-) (Transcription|
           factor SMIF) (MAD homolog 4-interacting transcription
           coactivator 1) (Smad4-interacting transcriptional
           co-activator)
          Length = 602

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
 Frame = +2

Query: 170 SLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQYAPSLHIFFS---VCSS 340
           +++A +   +  P + +  Q+  P   S P  +P+  P       P+     S   +  S
Sbjct: 466 AVSASLSNMVLAPTLQSMQQNQDPEVFSQPKVLPSAIPIAGSPLVPATTTAVSSVLLSPS 525

Query: 341 LRFETLPLWR--QSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLL 490
           +  +T+P     + KASS + L   TA   RKPS +     L +S    TL+
Sbjct: 526 VFQQTVPRAADLERKASSPSPLTVGTAESQRKPSII-----LSKSQLQDTLI 572

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>EF1D1_ARATH (P48006) Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation|
           factor 1B-beta 1) (eEF-1B beta 1)
          Length = 231

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -2

Query: 345 RKLEQTLKKMCKEGAYWGAVAGVYVGMEYGVERVR 241
           +KLE+ +K +  EG +WGA   V VG  YG+++++
Sbjct: 159 KKLEEAVKSIQMEGLFWGASKLVPVG--YGIKKLQ 191

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>RIMK_XANOR (Q5H3K7) Ribosomal protein S6 modification protein|
          Length = 295

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
 Frame = +1

Query: 94  VVDELDGGRDGAS-GDGVLGDLVPFVVARGRDQGAACD-ASNQRVFPVILSADPFHSILH 267
           +V E  G  +GA     V+GD V   VA  R Q A  D  SN  +    + AD       
Sbjct: 175 IVQEFIGEAEGADLRCFVVGDRV---VAAMRRQAAEGDFRSNLHLGGTAVVADATELERE 231

Query: 268 AYIHSSNSTPICALLAHFLQCL---LELALRDTPTLEAVEGVLGGHPAGADGADLEEAV 435
             + S+ +  +       ++     L L +  TP LE VEGV G   AGA    LE++V
Sbjct: 232 VAVRSARALGLAVAGVDLIRSKRGPLVLEVNSTPGLEGVEGVCGVDVAGAIVQHLEQSV 290

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>NCPR_CATRO (Q05001) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)|
           (P450R)
          Length = 714

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 11/131 (8%)
 Frame = +2

Query: 164 LLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAP-----------QYAPS 310
           LL + AE   P A PP+  FF +  PR     YS+ + +P  AP           +  P 
Sbjct: 464 LLEVMAEF--PSAKPPLGVFFAAIAPRLQPRFYSISS-SPRMAPSRIHVTCALVYEKTPG 520

Query: 311 LHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLL 490
             I   VCS+     +PL      S         API  + S  +L +  P+   +    
Sbjct: 521 GRIHKGVCSTWMKNAIPLEESRDCS--------WAPIFVRQSNFKLPAD-PKVPVIMIGP 571

Query: 491 DPAASPARGIL 523
               +P RG L
Sbjct: 572 GTGLAPFRGFL 582

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>FZD5_MOUSE (Q9EQD0) Frizzled 5 precursor (Frizzled-5) (Fz-5) (mFz5)|
          Length = 577

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 26/87 (29%), Positives = 34/87 (39%)
 Frame = +2

Query: 275 YTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSS 454
           YTP   P Y   L    SVC   +    PL RQ   +    +     P+L   + V L  
Sbjct: 90  YTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGGDAEV-LCM 148

Query: 455 GLPRSMAMSTLLDPAASPARGILPVPE 535
              RS    T   P + PA+  LP P+
Sbjct: 149 DYNRS---ETTASPKSFPAKPTLPGPQ 172

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>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1222

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +2

Query: 359  PLWRQSKASSAATLQAPTAPILRKPSTVR---LSSGLPRSMAMSTLLDPAASPARGILPV 529
            P + Q   S  +    P+ P L  PST     LS     S+A+ T+     SP+ G+L  
Sbjct: 876  PSYPQDPLSPTSLPVCPSPPSL--PSTTAAPLLSLASAFSLAVMTVAQSLLSPSPGLLSQ 933

Query: 530  PEPSRPVSLPISRLALGS 583
              P+ P  LP   L+L S
Sbjct: 934  SPPAPPGPLPSLPLSLAS 951

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>ARLY_THET2 (Q72GZ4) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 462

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 244 DPFHSILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGHPAGA 408
           DP + +L  Y H   + P+  LLAH+     E+  RD   LE  +  L   P GA
Sbjct: 149 DPLY-VLPGYTHLQRAQPV--LLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGA 200

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>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 915

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 11/161 (6%)
 Frame = +2

Query: 107 STAVAMAPPVMASWAILFPLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYT-- 280
           +TA A   PV A+          A    +  A P ++ F     P   S P   PT +  
Sbjct: 454 ATAPATPAPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMK--PPETSAPVVTPTASTA 511

Query: 281 ---PATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKP---STV 442
              PATAP  AP+  +  +  ++           + A++A T  AP A  +      S  
Sbjct: 512 PPVPATAPSPAPTA-VAATAATTTAAAAATTTATTSAAAATTAAAPPALDIFGDLFDSAP 570

Query: 443 RLSSGLPRSMAMSTLL---DPAASPARGILPVPEPSRPVSL 556
            +++     +A S  L   D  +SP RG  PVPE S    L
Sbjct: 571 EVAAASKPDVAPSIDLFGTDAFSSPPRGASPVPESSLTADL 611

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>MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)|
          Length = 978

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
 Frame = +2

Query: 161 PLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSS 340
           PL S  + +++P++ PP      S+C  ++ +P S P   P  +   +P+ ++  S CS 
Sbjct: 260 PLSSPLSSMKSPISSPP------SHC--SVKSPVSSPNNVPLRSSVSSPA-NLNNSRCS- 309

Query: 341 LRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGI 520
                  +   S  ++ +TL +PTA      STV  S G P S A S     A++ A  I
Sbjct: 310 -------VSSPSNTNNRSTLSSPTA------STVG-SIGSPISNAFSYTTSGASAGAGAI 355

Query: 521 LP-VPEP 538
              VP P
Sbjct: 356 QDMVPSP 362

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>CF150_HUMAN (Q8N884) Protein C6orf150|
          Length = 522

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 22/63 (34%), Positives = 26/63 (41%)
 Frame = +2

Query: 374 SKASSAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVS 553
           S A+SA   +    P  R+P+  R  S   R    ST   P   P      VP P  PVS
Sbjct: 94  SDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGP----WDVPSPGLPVS 149

Query: 554 LPI 562
            PI
Sbjct: 150 API 152

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>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)|
          Length = 768

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
 Frame = +2

Query: 332 CSSLRFETLP----LWRQSKASSAATLQAPTAP-----------ILRKPSTVRLSSGLP 463
           CSSL    L     L RQS AS  +   +P  P           ++ KPSTV+LSSG+P
Sbjct: 352 CSSLPSGRLQVDVTLRRQSNASDDSLSLSPGTPPSLLNNSTHRQMMSKPSTVKLSSGIP 410

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>YOPE_YEREN (P31492) Outer membrane virulence protein yopE|
          Length = 219

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 233 YCPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKAS-SAATLQ 403
           +  R  S     P  TPA  P   PS   F      L  ETLP + Q  +S  A TLQ
Sbjct: 73  FIQRMFSEGSHKPVVTPALTPAQMPSPTSFSDSIKQLAAETLPKYMQQLSSLDAETLQ 130

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>CASZ1_HUMAN (Q86V15) Castor homolog 1 zinc finger protein (Castor-related|
           protein)
          Length = 1044

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = +2

Query: 359 PLWRQSKAS-SAATLQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPE 535
           P  +QS AS +AAT      P   KP   ++S  LP+ +  S  L  A S +   LP P 
Sbjct: 620 PTSQQSSASLAAATAATEAGPSATKPPNSKISGLLPQGLPGSIPLALALSNSG--LPTPT 677

Query: 536 PSRPV-------SLPISRLAL 577
           P  P+       SLP+   +L
Sbjct: 678 PYFPILAGRGSTSLPVGTPSL 698

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>LIVH_SALTY (P0A2J1) High-affinity branched-chain amino acid transport system|
           permease protein livH (LIV-I protein H)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 429 FLKIGAVG-ACRVAAEDAFDCLQSGSVSKRKLEQTLKKMCKEGAYWGAVAGVYVGMEYGV 253
           F++   +G ACR  AED    L+  S+     ++ +      GA   AVAGV +G  YGV
Sbjct: 174 FIRYSRMGRACRACAED----LKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGV 229

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>LIVH_SALTI (P0A2J2) High-affinity branched-chain amino acid transport system|
           permease protein livH (LIV-I protein H)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 429 FLKIGAVG-ACRVAAEDAFDCLQSGSVSKRKLEQTLKKMCKEGAYWGAVAGVYVGMEYGV 253
           F++   +G ACR  AED    L+  S+     ++ +      GA   AVAGV +G  YGV
Sbjct: 174 FIRYSRMGRACRACAED----LKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGV 229

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>LIVH_ECOLI (P0AEX7) High-affinity branched-chain amino acid transport system|
           permease protein livH (LIV-I protein H)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 429 FLKIGAVG-ACRVAAEDAFDCLQSGSVSKRKLEQTLKKMCKEGAYWGAVAGVYVGMEYGV 253
           F++   +G ACR  AED    L+  S+     ++ +      GA   AVAGV +G  YGV
Sbjct: 174 FIRYSRMGRACRACAED----LKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGV 229

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>LIVH_ECO57 (P0AEX8) High-affinity branched-chain amino acid transport system|
           permease protein livH (LIV-I protein H)
          Length = 308

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 429 FLKIGAVG-ACRVAAEDAFDCLQSGSVSKRKLEQTLKKMCKEGAYWGAVAGVYVGMEYGV 253
           F++   +G ACR  AED    L+  S+     ++ +      GA   AVAGV +G  YGV
Sbjct: 174 FIRYSRMGRACRACAED----LKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGV 229

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>GP10_DICDI (Q06885) Glycoprotein gp100 precursor (P29F8)|
          Length = 544

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
 Frame = +2

Query: 224 FQSYCPRTLSTPYSMPTYTPATAPQYA--PSLHIFFSVCSSLRFETLPLWRQSKASSAAT 397
           F    P    TP S PT TP + P     P++             T+P    S  S   +
Sbjct: 113 FSKQTPTPTPTPTSKPTSTPTSTPSQTIPPTVS-----------PTVPPQTTSPTSKPTS 161

Query: 398 LQAPTAPILRKPSTVRLSSGLPRSMAMSTLLDPAAS--PARGILPVPEPSRPVS 553
              PT+      +    S  +P     +T   P  S  P +  +P P P+RP S
Sbjct: 162 TPTPTSTPTPTSTPTPTSQTIPPP---TTTPKPTKSSKPTKTPVPTPTPTRPSS 212

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>YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5|
          Length = 1216

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 32/112 (28%), Positives = 45/112 (40%)
 Frame = +2

Query: 236  CPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTA 415
            C R+ +T     T  P+T  + A +     S   +   E +P    SK    +T Q PT+
Sbjct: 814  CARSHTT-----TVEPSTPLETASTSQSTPSATLTSTTENIP--STSKIPETSTTQRPTS 866

Query: 416  PILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVSLPISRL 571
            PIL   +T   SS        ST   P  S    + P   P   +S PI +L
Sbjct: 867  PILTSGATSTSSS------TESTTTSPTTSTTTTLPPTTTPYN-LSAPIPKL 911

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>KDSA_ERWCT (Q6D547) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)|
           (Phospho-2-dehydro-3-deoxyoctonate aldolase)
           (3-deoxy-D-manno-octulosonic acid 8-phosphate
           synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
           synthase) (KDOPS)
          Length = 284

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 139 GVLGDLVPFVVARGRDQGAACD-ASNQRVFPVILSADPFHSILHAYIHSSNSTPICALLA 315
           G +G++V   +  G DQ   CD  SN     +++    F+ + HA    SN +P+   + 
Sbjct: 146 GQMGNIVDKFIEGGNDQIILCDRGSNFGYDNLVVDMLGFNVMKHA----SNGSPVIFDVT 201

Query: 316 HFLQC 330
           H LQC
Sbjct: 202 HALQC 206

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>CARB_PSEPK (Q88DU6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1073

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 31/122 (25%), Positives = 44/122 (36%)
 Frame = +1

Query: 217 RVFPVILSADPFHSILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGH 396
           R   ++   D     L   +  SN +P+  LL HFL C +E+ +                
Sbjct: 722 RAMEIVYELDELKRYLREAVQVSNDSPV--LLDHFLNCAIEMDV---------------- 763

Query: 397 PAGADGADLEEAVDGAVEQRVAEVDGDVHLXXXXXXXXXXHPSGSGTFSAGLPPYLSSST 576
            A  DG D+   V GA+ Q + +    VH               SG  +  LPPY  S  
Sbjct: 764 DAVCDGTDV---VIGAIMQHIEQ--AGVH---------------SGDSACSLPPYSLSKE 803

Query: 577 RQ 582
            Q
Sbjct: 804 VQ 805

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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 28/111 (25%), Positives = 41/111 (36%)
 Frame = +2

Query: 233  YCPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPT 412
            Y P + S   S P YTPA +P+Y+P+                      K S  +   +PT
Sbjct: 1839 YTPTSPSYSPSSPEYTPA-SPKYSPT--------------------SPKYSPTSPKYSPT 1877

Query: 413  APILRKPSTVRLSSGLPRSMAMSTLLDPAASPARGILPVPEPSRPVSLPIS 565
            +P    P+T + S   P     S +  P +       P   P+ P   P S
Sbjct: 1878 SPTY-SPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTS 1927

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>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein) (Phosphoprotein F1-20)
          Length = 901

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 19/169 (11%)
 Frame = +2

Query: 107 STAVAMAPPVMASWAILFPLLSLAAEIRAPLAMPPINAFFQSYCPRTLSTPYSMPTYT-- 280
           +TA A   PV A+          A    +  A P ++ F     P   S P   PT +  
Sbjct: 454 ATAPATPAPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMK--PPETSAPVVTPTASTA 511

Query: 281 ---PATAPQYAPSLHIFFSVCSSLRFETLPLWRQSKASSAATLQAPTAPILRKPSTVRLS 451
              PATAP  AP+     +V ++    T      + A++ AT  A  A     P  + + 
Sbjct: 512 PPVPATAPSPAPT-----AVAATAATTTAA----AAATTTATTSAAAATTAAAPPALDIF 562

Query: 452 SGL----------PRSMAMSTL----LDPAASPARGILPVPEPSRPVSL 556
             L          P+  A  ++     D  +SP RG  PVPE S    L
Sbjct: 563 GDLFDSAPEVAAAPKPDAAPSIDLFGTDAFSSPPRGASPVPESSLTADL 611

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>SOCS6_MOUSE (Q9JLY0) Suppressor of cytokine signaling 6 (SOCS-6) (Suppressor of|
           cytokine signaling 4) (SOCS-4) (Cytokine-inducible SH2
           protein 4) (CIS-4)
          Length = 533

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 414 AVGACRVAAEDAFDCLQS-GSVSKRKLEQTLKKMCKEGAYWGAV 286
           A G  RV     +D +QS G +    L + LKK+ K+G YWG +
Sbjct: 349 APGVARV-----YDSVQSSGPMVVTSLTEELKKLAKQGWYWGPI 387

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>K0319_MOUSE (Q5SZV5) Protein KIAA0319 precursor|
          Length = 1081

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
 Frame = +2

Query: 350 ETLPLWRQSKASSAATLQAPT-----APILRKPSTVRLSSGL---PRSMAMSTLLDPAAS 505
           ETL L  Q   SS   +  P+     A +   P+T   +S     PRS   ST   P ++
Sbjct: 262 ETLQLQEQPSNSSGKEVPMPSHNPSPASLESSPATTEKNSNFTVTPRSRKHSTPTFPTST 321

Query: 506 PARGILPVPEPSRPVS 553
              G+ P P P  P +
Sbjct: 322 VLTGLTPPPWPLSPTA 337

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>CNKR1_HUMAN (Q969H4) Connector enhancer of kinase suppressor of ras 1|
           (Connector enhancer of KSR1) (hCNK1) (Connector enhancer
           of KSR-like) (CNK homolog protein 1)
          Length = 720

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 239 PRTLSTPYSM-PTYTPATAPQYAPSLHIF-FSVCSSLRFETLPLWRQSKASSAATLQAPT 412
           P+ L +P+   P+ + A     APS  +F F + S+      P W  S +     L  P 
Sbjct: 295 PQVLDSPHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPP 354

Query: 413 APILRKPSTVRLSSGLPRS 469
            P    P+ V  + GLP S
Sbjct: 355 EPPAILPAGVAGTPGLPES 373

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>CARB_PSESM (Q87WP4) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1073

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 29/115 (25%), Positives = 42/115 (36%)
 Frame = +1

Query: 217 RVFPVILSADPFHSILHAYIHSSNSTPICALLAHFLQCLLELALRDTPTLEAVEGVLGGH 396
           R   ++   D     L   +  SN +P+  LL HFL C +E+ +                
Sbjct: 722 RAMEIVYQEDELKRYLREAVQVSNDSPV--LLDHFLNCAIEMDV---------------- 763

Query: 397 PAGADGADLEEAVDGAVEQRVAEVDGDVHLXXXXXXXXXXHPSGSGTFSAGLPPY 561
            A  DG D+   V GA+ Q + +    VH               SG  +  LPPY
Sbjct: 764 DAVCDGTDV---VIGAIMQHIEQ--AGVH---------------SGDSACSLPPY 798

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>SOCS6_HUMAN (O14544) Suppressor of cytokine signaling 6 (SOCS-6) (Suppressor of|
           cytokine signaling 4) (SOCS-4) (Cytokine-inducible SH2
           protein 4) (CIS-4)
          Length = 535

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 414 AVGACRVAAEDAFDCLQS-GSVSKRKLEQTLKKMCKEGAYWGAV 286
           A G  RV     +D +QS G +    L + LKK+ K+G YWG +
Sbjct: 351 APGVARV-----YDSVQSSGPMVVTSLTEELKKLAKQGWYWGPI 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,689,121
Number of Sequences: 219361
Number of extensions: 1401192
Number of successful extensions: 6498
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 6049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6435
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result