| Clone Name | rbaal27a04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483211.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1507 Score = 611 bits (308), Expect = e-171 Identities = 454/503 (90%) Strand = Plus / Minus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 1293 tcagatcctggacgggatgagcggcgtcgaattcgacaggtacgccgccgccgccgccac 1234 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccaccccgccgag 294 |||| ||| |||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 1233 gccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactcag 1174 Query: 295 gcaacccagaagttgcagctcgttgaggtggccgaggtggccgatcctgaagaccttgcc 354 | ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1173 ggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgcc 1114 Query: 355 ggcgaccttgttgagcccgagcccgaggctgaggttgtaccgcttccatgcgtgcttgac 414 ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 1113 ggcgaccttgttgaggccgaggccgaggctgaggttgtaccgcttccaggcgtgcttcac 1054 Query: 415 gatctcgctgctgtcgatgtatggcggcacgacgacggcggtgaccgtgtcgctgaagtt 474 ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1053 gatctcggcgctgtcgatgtacggcggcacgacgacggcggtgacggtgtcgctgaacca 994 Query: 475 ctcctccttctcggtgcagttcttgagcccccacgctgccaccgccagccttgttgcggt 534 ||||||||||| ||||||||||||||||||||||| |||| |||||||| || ||||| Sbjct: 993 ctcctccttctgcgtgcagttcttgagcccccacgcctccacggccagcctggtggcggt 934 Query: 535 gccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggaggtcgag 594 ||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct: 933 gccgaggcggttgtgcctcttgatgacgttctcgaggccttcctcgaagatgaggtcgag 874 Query: 595 gccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtgcccat 654 | ||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 873 ggcggtgcggaggccgtagaggagctggatggatggggtgtagggccagtaggtgcccat 814 Query: 655 cttgtagaacttgangtagtcct 677 |||||||||||||| |||||||| Sbjct: 813 cttgtagaacttgaggtagtcct 791
>ref|XM_507283.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1345_D02.38 mRNA Length = 1567 Score = 611 bits (308), Expect = e-171 Identities = 454/503 (90%) Strand = Plus / Minus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 1285 tcagatcctggacgggatgagcggcgtcgaattcgacaggtacgccgccgccgccgccac 1226 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccaccccgccgag 294 |||| ||| |||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 1225 gccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactcag 1166 Query: 295 gcaacccagaagttgcagctcgttgaggtggccgaggtggccgatcctgaagaccttgcc 354 | ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1165 ggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgcc 1106 Query: 355 ggcgaccttgttgagcccgagcccgaggctgaggttgtaccgcttccatgcgtgcttgac 414 ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 1105 ggcgaccttgttgaggccgaggccgaggctgaggttgtaccgcttccaggcgtgcttcac 1046 Query: 415 gatctcgctgctgtcgatgtatggcggcacgacgacggcggtgaccgtgtcgctgaagtt 474 ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1045 gatctcggcgctgtcgatgtacggcggcacgacgacggcggtgacggtgtcgctgaacca 986 Query: 475 ctcctccttctcggtgcagttcttgagcccccacgctgccaccgccagccttgttgcggt 534 ||||||||||| ||||||||||||||||||||||| |||| |||||||| || ||||| Sbjct: 985 ctcctccttctgcgtgcagttcttgagcccccacgcctccacggccagcctggtggcggt 926 Query: 535 gccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggaggtcgag 594 ||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct: 925 gccgaggcggttgtgcctcttgatgacgttctcgaggccttcctcgaagatgaggtcgag 866 Query: 595 gccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtgcccat 654 | ||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 865 ggcggtgcggaggccgtagaggagctggatggatggggtgtagggccagtaggtgcccat 806 Query: 655 cttgtagaacttgangtagtcct 677 |||||||||||||| |||||||| Sbjct: 805 cttgtagaacttgaggtagtcct 783
>dbj|AK099206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049F20, full insert sequence Length = 1321 Score = 611 bits (308), Expect = e-171 Identities = 454/503 (90%) Strand = Plus / Minus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 1059 tcagatcctggacgggatgagcggcgtcgaattcgacaggtacgccgccgccgccgccac 1000 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccaccccgccgag 294 |||| ||| |||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 999 gccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactcag 940 Query: 295 gcaacccagaagttgcagctcgttgaggtggccgaggtggccgatcctgaagaccttgcc 354 | ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 939 ggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgcc 880 Query: 355 ggcgaccttgttgagcccgagcccgaggctgaggttgtaccgcttccatgcgtgcttgac 414 ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 879 ggcgaccttgttgaggccgaggccgaggctgaggttgtaccgcttccaggcgtgcttcac 820 Query: 415 gatctcgctgctgtcgatgtatggcggcacgacgacggcggtgaccgtgtcgctgaagtt 474 ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 819 gatctcggcgctgtcgatgtacggcggcacgacgacggcggtgacggtgtcgctgaacca 760 Query: 475 ctcctccttctcggtgcagttcttgagcccccacgctgccaccgccagccttgttgcggt 534 ||||||||||| ||||||||||||||||||||||| |||| |||||||| || ||||| Sbjct: 759 ctcctccttctgcgtgcagttcttgagcccccacgcctccacggccagcctggtggcggt 700 Query: 535 gccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggaggtcgag 594 ||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct: 699 gccgaggcggttgtgcctcttgatgacgttctcgaggccttcctcgaagatgaggtcgag 640 Query: 595 gccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtgcccat 654 | ||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 639 ggcggtgcggaggccgtagaggagctggatggatggggtgtagggccagtaggtgcccat 580 Query: 655 cttgtagaacttgangtagtcct 677 |||||||||||||| |||||||| Sbjct: 579 cttgtagaacttgaggtagtcct 557
>dbj|AK065126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P06, full insert sequence Length = 1507 Score = 611 bits (308), Expect = e-171 Identities = 454/503 (90%) Strand = Plus / Minus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 1293 tcagatcctggacgggatgagcggcgtcgaattcgacaggtacgccgccgccgccgccac 1234 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccaccccgccgag 294 |||| ||| |||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 1233 gccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactcag 1174 Query: 295 gcaacccagaagttgcagctcgttgaggtggccgaggtggccgatcctgaagaccttgcc 354 | ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1173 ggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgcc 1114 Query: 355 ggcgaccttgttgagcccgagcccgaggctgaggttgtaccgcttccatgcgtgcttgac 414 ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 1113 ggcgaccttgttgaggccgaggccgaggctgaggttgtaccgcttccaggcgtgcttcac 1054 Query: 415 gatctcgctgctgtcgatgtatggcggcacgacgacggcggtgaccgtgtcgctgaagtt 474 ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1053 gatctcggcgctgtcgatgtacggcggcacgacgacggcggtgacggtgtcgctgaacca 994 Query: 475 ctcctccttctcggtgcagttcttgagcccccacgctgccaccgccagccttgttgcggt 534 ||||||||||| ||||||||||||||||||||||| |||| |||||||| || ||||| Sbjct: 993 ctcctccttctgcgtgcagttcttgagcccccacgcctccacggccagcctggtggcggt 934 Query: 535 gccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggaggtcgag 594 ||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct: 933 gccgaggcggttgtgcctcttgatgacgttctcgaggccttcctcgaagatgaggtcgag 874 Query: 595 gccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtgcccat 654 | ||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 873 ggcggtgcggaggccgtagaggagctggatggatggggtgtagggccagtaggtgcccat 814 Query: 655 cttgtagaacttgangtagtcct 677 |||||||||||||| |||||||| Sbjct: 813 cttgtagaacttgaggtagtcct 791
>dbj|AK064774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A23, full insert sequence Length = 1567 Score = 611 bits (308), Expect = e-171 Identities = 454/503 (90%) Strand = Plus / Minus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 1285 tcagatcctggacgggatgagcggcgtcgaattcgacaggtacgccgccgccgccgccac 1226 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccaccccgccgag 294 |||| ||| |||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 1225 gccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccactccactcag 1166 Query: 295 gcaacccagaagttgcagctcgttgaggtggccgaggtggccgatcctgaagaccttgcc 354 | ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1165 ggcacccatcaattgcagctcgttgaggtggccgaggtggccgatcctgaacaccttgcc 1106 Query: 355 ggcgaccttgttgagcccgagcccgaggctgaggttgtaccgcttccatgcgtgcttgac 414 ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 1105 ggcgaccttgttgaggccgaggccgaggctgaggttgtaccgcttccaggcgtgcttcac 1046 Query: 415 gatctcgctgctgtcgatgtatggcggcacgacgacggcggtgaccgtgtcgctgaagtt 474 ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1045 gatctcggcgctgtcgatgtacggcggcacgacgacggcggtgacggtgtcgctgaacca 986 Query: 475 ctcctccttctcggtgcagttcttgagcccccacgctgccaccgccagccttgttgcggt 534 ||||||||||| ||||||||||||||||||||||| |||| |||||||| || ||||| Sbjct: 985 ctcctccttctgcgtgcagttcttgagcccccacgcctccacggccagcctggtggcggt 926 Query: 535 gccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggaggtcgag 594 ||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct: 925 gccgaggcggttgtgcctcttgatgacgttctcgaggccttcctcgaagatgaggtcgag 866 Query: 595 gccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtgcccat 654 | ||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 865 ggcggtgcggaggccgtagaggagctggatggatggggtgtagggccagtaggtgcccat 806 Query: 655 cttgtagaacttgangtagtcct 677 |||||||||||||| |||||||| Sbjct: 805 cttgtagaacttgaggtagtcct 783
>gb|AY107617.1| Zea mays PCO084394 mRNA sequence Length = 1016 Score = 422 bits (213), Expect = e-115 Identities = 431/504 (85%) Strand = Plus / Minus Query: 174 ctcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgcca 233 ||||||| || || |||||||| |||||||| || || ||||||||||||||||| |||| Sbjct: 766 ctcagatcctagatgggatgagcggcgtggagtttgacaggtacgccgccgcggctgcca 707 Query: 234 cgccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccaccccgccga 293 ||||||| || || ||||| |||||||| | |||||||||||||||||||| |||| | Sbjct: 706 cgccgctacctagtttcactgggtaccccacatccttgagcaccatctccacaccgctca 647 Query: 294 ggcaacccagaagttgcagctcgttgaggtggccgaggtggccgatcctgaagaccttgc 353 | || ||||||||||||||||||||||||| |||||| |||||||||||||||||||| | Sbjct: 646 gacatcccagaagttgcagctcgttgaggttgccgagatggccgatcctgaagaccttcc 587 Query: 354 cggcgaccttgttgagcccgagcccgaggctgaggttgtaccgcttccatgcgtgcttga 413 ||||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||| ||| Sbjct: 586 cggcgactttgttgaggccgaggccgagactgaggttgtaccgcttccacgcgtgcctga 527 Query: 414 cgatctcgctgctgtcgatgtatggcggcacgacgacggcggtgaccgtgtcgctgaagt 473 ||| |||| ||||||||||| |||||||||||| |||||||||| ||||||||||| Sbjct: 526 cgacctcggcgctgtcgatgttgggcggcacgacggcggcggtgacggtgtcgctgaacc 467 Query: 474 tctcctccttctcggtgcagttcttgagcccccacgctgccaccgccagccttgttgcgg 533 ||||||||||| | |||||| ||||||||||||| | || || ||||| || || | Sbjct: 466 actcctccttctggcagcagttgctgagcccccacgcctcgacggcgagcctggtggctg 407 Query: 534 tgccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggaggtcga 593 | || ||||| |||||||| | | ||||||||| || || |||||||||| |||||||| Sbjct: 406 tcccaaggcggttgtgcctcctcacgacgttgtccagcccttcctcgaagatgaggtcga 347 Query: 594 ggccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtgccca 653 | ||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 346 gcgcggtgcggaggccgtagaggagctggatggagggcgtgtagggccagtacgtgccca 287 Query: 654 tcttgtagaacttgangtagtcct 677 | | ||||||| ||| |||||||| Sbjct: 286 tgtcgtagaacctgaggtagtcct 263
>emb|AJ234439.1|HVU234439 Hordeum vulgare partial mRNA; clone cMWG0725 Length = 383 Score = 349 bits (176), Expect = 7e-93 Identities = 199/203 (98%), Gaps = 3/203 (1%) Strand = Plus / Minus Query: 1 ctcctttagcntagatgggtgtgtgaaaattaactttacatacagagnagnagtataata 60 |||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 201 ctcctttagcatagatgggtgtgtgaaaattaactttacatacagag-ag-agtataata 144 Query: 61 ctacgcctgctctgctgtgctctgccgtgtgcccagcagcagacccaagcagggcacact 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143 ctacgcctgctctgctgtgctctgccgtgtgcccagcagcagacccaagcagggcacact 84 Query: 121 gtacgtgtttgttcttctcctcgcga-cccccttgcttttgtgcgtggaatttgctcaga 179 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 83 gtacgtgtttgttcttctcctcgcgaccccccttgcttttgtgcgtggaatttgctcaga 24 Query: 180 ttctggaggggatgaggggcgtg 202 ||||||||||||||||||||||| Sbjct: 23 ttctggaggggatgaggggcgtg 1
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 287 bits (145), Expect = 2e-74 Identities = 196/213 (92%) Strand = Plus / Plus Query: 313 ctcgttgaggtggccgaggtggccgatcctgaagaccttgccggcgaccttgttgagccc 372 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 24821413 ctcgttgaggtggccgaggtggccgatcctgaacaccttgccggcgaccttgttgaggcc 24821472 Query: 373 gagcccgaggctgaggttgtaccgcttccatgcgtgcttgacgatctcgctgctgtcgat 432 ||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| Sbjct: 24821473 gaggccgaggctgaggttgtaccgcttccaggcgtgcttcacgatctcggcgctgtcgat 24821532 Query: 433 gtatggcggcacgacgacggcggtgaccgtgtcgctgaagttctcctccttctcggtgca 492 ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct: 24821533 gtacggcggcacgacgacggcggtgacggtgtcgctgaaccactcctccttctgcgtgca 24821592 Query: 493 gttcttgagcccccacgctgccaccgccagcct 525 |||||||||||||||||| |||| |||||||| Sbjct: 24821593 gttcttgagcccccacgcctccacggccagcct 24821625 Score = 208 bits (105), Expect = 2e-50 Identities = 137/148 (92%) Strand = Plus / Plus Query: 530 gcggtgccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggagg 589 |||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||| Sbjct: 24821723 gcggtgccgaggcggttgtgcctcttgatgacgttctcgaggccttcctcgaagatgagg 24821782 Query: 590 tcgaggccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtg 649 |||||| ||| ||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 24821783 tcgagggcggtgcggaggccgtagaggagctggatggatggggtgtagggccagtaggtg 24821842 Query: 650 cccatcttgtagaacttgangtagtcct 677 ||||||||||||||||||| |||||||| Sbjct: 24821843 cccatcttgtagaacttgaggtagtcct 24821870 Score = 141 bits (71), Expect = 3e-30 Identities = 101/111 (90%) Strand = Plus / Plus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 24821183 tcagatcctggacgggatgagcggcgtcgaattcgacaggtacgccgccgccgccgccac 24821242 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccac 285 |||| ||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 24821243 gccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccac 24821293 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 ctcctcgaagaggaggtcgag 594 ||||||||||||||||||||| Sbjct: 9175029 ctcctcgaagaggaggtcgag 9175049 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 4755695 acgccgccgccgccgccacgccgc 4755718
>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1345_D02 Length = 159613 Score = 287 bits (145), Expect = 2e-74 Identities = 196/213 (92%) Strand = Plus / Plus Query: 313 ctcgttgaggtggccgaggtggccgatcctgaagaccttgccggcgaccttgttgagccc 372 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 122214 ctcgttgaggtggccgaggtggccgatcctgaacaccttgccggcgaccttgttgaggcc 122273 Query: 373 gagcccgaggctgaggttgtaccgcttccatgcgtgcttgacgatctcgctgctgtcgat 432 ||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| Sbjct: 122274 gaggccgaggctgaggttgtaccgcttccaggcgtgcttcacgatctcggcgctgtcgat 122333 Query: 433 gtatggcggcacgacgacggcggtgaccgtgtcgctgaagttctcctccttctcggtgca 492 ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct: 122334 gtacggcggcacgacgacggcggtgacggtgtcgctgaaccactcctccttctgcgtgca 122393 Query: 493 gttcttgagcccccacgctgccaccgccagcct 525 |||||||||||||||||| |||| |||||||| Sbjct: 122394 gttcttgagcccccacgcctccacggccagcct 122426 Score = 208 bits (105), Expect = 2e-50 Identities = 137/148 (92%) Strand = Plus / Plus Query: 530 gcggtgccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggagg 589 |||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||| Sbjct: 122524 gcggtgccgaggcggttgtgcctcttgatgacgttctcgaggccttcctcgaagatgagg 122583 Query: 590 tcgaggccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtg 649 |||||| ||| ||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 122584 tcgagggcggtgcggaggccgtagaggagctggatggatggggtgtagggccagtaggtg 122643 Query: 650 cccatcttgtagaacttgangtagtcct 677 ||||||||||||||||||| |||||||| Sbjct: 122644 cccatcttgtagaacttgaggtagtcct 122671 Score = 141 bits (71), Expect = 3e-30 Identities = 101/111 (90%) Strand = Plus / Plus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 121984 tcagatcctggacgggatgagcggcgtcgaattcgacaggtacgccgccgccgccgccac 122043 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccac 285 |||| ||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 122044 gccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccac 122094
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 287 bits (145), Expect = 2e-74 Identities = 196/213 (92%) Strand = Plus / Plus Query: 313 ctcgttgaggtggccgaggtggccgatcctgaagaccttgccggcgaccttgttgagccc 372 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 25859 ctcgttgaggtggccgaggtggccgatcctgaacaccttgccggcgaccttgttgaggcc 25918 Query: 373 gagcccgaggctgaggttgtaccgcttccatgcgtgcttgacgatctcgctgctgtcgat 432 ||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| Sbjct: 25919 gaggccgaggctgaggttgtaccgcttccaggcgtgcttcacgatctcggcgctgtcgat 25978 Query: 433 gtatggcggcacgacgacggcggtgaccgtgtcgctgaagttctcctccttctcggtgca 492 ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct: 25979 gtacggcggcacgacgacggcggtgacggtgtcgctgaaccactcctccttctgcgtgca 26038 Query: 493 gttcttgagcccccacgctgccaccgccagcct 525 |||||||||||||||||| |||| |||||||| Sbjct: 26039 gttcttgagcccccacgcctccacggccagcct 26071 Score = 208 bits (105), Expect = 2e-50 Identities = 137/148 (92%) Strand = Plus / Plus Query: 530 gcggtgccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggagg 589 |||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||| Sbjct: 26169 gcggtgccgaggcggttgtgcctcttgatgacgttctcgaggccttcctcgaagatgagg 26228 Query: 590 tcgaggccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtg 649 |||||| ||| ||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 26229 tcgagggcggtgcggaggccgtagaggagctggatggatggggtgtagggccagtaggtg 26288 Query: 650 cccatcttgtagaacttgangtagtcct 677 ||||||||||||||||||| |||||||| Sbjct: 26289 cccatcttgtagaacttgaggtagtcct 26316 Score = 141 bits (71), Expect = 3e-30 Identities = 101/111 (90%) Strand = Plus / Plus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct: 25629 tcagatcctggacgggatgagcggcgtcgaattcgacaggtacgccgccgccgccgccac 25688 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccac 285 |||| ||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 25689 gccggagccgagcttcaccgggtagccgatgtccttgagcaccatctccac 25739
>gb|DQ177463.1| Spirodela polyrrhiza serine-glyoxylate aminotransferase mRNA, complete cds Length = 1378 Score = 170 bits (86), Expect = 4e-39 Identities = 397/501 (79%) Strand = Plus / Minus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||||||||||||||| || || ||| ||||||||||| |||||||| Sbjct: 1241 tcagatcctggaggggatgaggggggtattgttgaggagatacgccgccgctgccgccac 1182 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccaccccgccgag 294 |||||||| |||||| |||||||||| | |||| | | |||||||||||| |||| || Sbjct: 1181 cccgctgcctagcttcgccgggtaccccacgtcccttaacaccatctccacgccgctcag 1122 Query: 295 gcaacccagaagttgcagctcgttgaggtggccgaggtggccgatcctgaagaccttgcc 354 ||| |||| |||||||||||||||| || ||||| || || || ||||| ||||| || Sbjct: 1121 gcaccccaacagttgcagctcgttgacgttaccgagatgccctattctgaacacctttcc 1062 Query: 355 ggcgaccttgttgagcccgagcccgaggctgaggttgtaccgcttccatgcgtgcttgac 414 || |||||||| ||||| | || | ||| |||||| | ||||||||||| | |||| Sbjct: 1061 agctaccttgttcagccccaagcccaagctcaggttgaagcgcttccatgccctcctgac 1002 Query: 415 gatctcgctgctgtcgatgtatggcggcacgacgacggcggtgaccgtgtcgctgaagtt 474 |||||| ||||||||||| || || || || || || || ||||| ||||| Sbjct: 1001 gatctctgaactgtcgatgtagcctggaaccaccaccgctgtcactgtgtcactgaacca 942 Query: 475 ctcctccttctcggtgcagttcttgagcccccacgctgccaccgccagccttgttgcggt 534 ||||||||||| ||||||||||| || ||||| ||| |||| || ||||||||||| || Sbjct: 941 ctcctccttctgcgtgcagttcttcaggccccaggcttccacagcaagccttgttgccgt 882 Query: 535 gccgaggcgtgtgtgcctcttgatgacgttgtcgaggccctcctcgaagaggaggtcgag 594 || ||||| |||||||| ||| ||||| ||||||||||||||||| | |||||| || Sbjct: 881 ccccaggcggctgtgcctccggatcacgttctcgaggccctcctcgaatatgaggtccag 822 Query: 595 gccggcgcgtaggccgtagaggagctggatggacggcgtgtagggccagtaggtgcccat 654 | || || || || || || || || |||||||| ||||| |||||||| || ||||| Sbjct: 821 agcagctcgaagcccataaagcagttgaatggacggggtgtacggccagtaagtccccat 762 Query: 655 cttgtagaacttgangtagtc 675 |||||||||||||| |||||| Sbjct: 761 cttgtagaacttgaggtagtc 741
>gb|L34038.1|RICRMSO Oryza sativa manganese superoxide dismutase (rmsod1) mRNA, complete cds Length = 951 Score = 103 bits (52), Expect = 7e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 605 aggccgtagaggagctggatggacggcgtgtagggccagtaggtgcccatcttgtagaac 664 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 63 aggccgtagaggagctggatggatggggtgtagggccagtaggtgcccatcttgtagaac 4
>gb|AY053359.1| Spirodela polyrhiza serine-glyoxylate aminotransferase (SGAT) mRNA, partial cds Length = 320 Score = 99.6 bits (50), Expect = 1e-17 Identities = 122/146 (83%) Strand = Plus / Minus Query: 175 tcagattctggaggggatgaggggcgtggaattcgagaggtacgccgccgcggccgccac 234 |||||| ||||||||||||||||| || || ||| ||||||||||| |||||||| Sbjct: 183 tcagatcctggaggggatgaggggggtattgttgaggagatacgccgccgctgccgccac 124 Query: 235 gccgctgccaagcttcaccgggtacccgatgtccttgagcaccatctccaccccgccgag 294 |||||||| ||||||||||||||||| | |||| | | |||||||||||| |||| || Sbjct: 123 cccgctgcctagcttcaccgggtaccccacgtcccttaacaccatctccacgccgctcag 64 Query: 295 gcaacccagaagttgcagctcgttga 320 ||| |||| |||||||||||||||| Sbjct: 63 gcaccccaacagttgcagctcgttga 38
>dbj|D86125.1| Hyphomicrobium methylovorum DNA for serine-glyoxylate aminotransferase, complete cds Length = 2303 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 325 gccgaggtggccgatcctgaagaccttgccggcgaccttgttgagcccgagcccga 380 ||||||||||||||| | |||||| |||||||||||||||||||| ||||| |||| Sbjct: 1957 gccgaggtggccgatgcggaagactttgccggcgaccttgttgaggccgagaccga 1902
>gb|AE007302.1| Sinorhizobium meliloti 1021 plasmid pSymA section 108 of 121 of the complete plasmid sequence Length = 10507 Score = 56.0 bits (28), Expect = 2e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 313 ctcgttgaggtggccgaggtggccgatcctgaagaccttgccggcgaccttgttgagccc 372 |||||| |||| ||||||||||||||||||||| ||| ||| || |||||| ||||||| Sbjct: 4606 ctcgttcaggtcgccgaggtggccgatcctgaaaacccggcccgccaccttgctgagccc 4665
>gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete sequence Length = 113836 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Plus Query: 611 tagaggagctggatggacggcgtgtagggccagtaggtgcccatcttgtagaacttgang 670 ||||| ||||| ||||| || ||||| ||||| || || ||||||||||||||||| | | Sbjct: 63281 tagagaagctgaatggaaggagtgtatggccaataagttcccatcttgtagaacttcagg 63340 Query: 671 tagtc 675 ||||| Sbjct: 63341 tagtc 63345
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 418 ctcgctgctgtcgatgtatggc 439 |||||||||||||||||||||| Sbjct: 1677290 ctcgctgctgtcgatgtatggc 1677311
>gb|AF039000.1|AF039000 Fritillaria agrestis putative serine-glyoxylate aminotransferase (SGA) mRNA, complete cds Length = 1487 Score = 44.1 bits (22), Expect = 0.59 Identities = 43/50 (86%) Strand = Plus / Minus Query: 266 tccttgagcaccatctccaccccgccgaggcaacccagaagttgcagctc 315 |||||||| ||||||||||| || | ||||||||||| | ||||||||| Sbjct: 1233 tccttgagtaccatctccacaccactcaggcaacccagcaattgcagctc 1184 Score = 42.1 bits (21), Expect = 2.3 Identities = 47/56 (83%) Strand = Plus / Minus Query: 620 tggatggacggcgtgtagggccagtaggtgcccatcttgtagaacttgangtagtc 675 |||||||| || |||||||||||||| || || || ||||| ||||| | |||||| Sbjct: 879 tggatggaaggtgtgtagggccagtaagtaccaattttgtaaaactttaggtagtc 824
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgcc 237 |||||||||||||||||||||| Sbjct: 4363069 acgccgccgcggccgccacgcc 4363090
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgcc 237 |||||||||||||||||||||| Sbjct: 4295847 acgccgccgcggccgccacgcc 4295868
>ref|XM_481004.1| Oryza sativa (japonica cultivar-group), mRNA Length = 492 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 574 ctcctcgaagaggaggtcgag 594 ||||||||||||||||||||| Sbjct: 282 ctcctcgaagaggaggtcgag 262
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 ccgccgcggccgccacgccgc 239 ||||||||||||||||||||| Sbjct: 248577 ccgccgcggccgccacgccgc 248557
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgc 236 ||||||||||||||||||||| Sbjct: 34756737 acgccgccgcggccgccacgc 34756757 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 ggcggcacgacgacggcggtg 457 ||||||||||||||||||||| Sbjct: 19963293 ggcggcacgacgacggcggtg 19963313
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 acgccgccgcggccgccacgc 236 ||||||||||||||||||||| Sbjct: 105913 acgccgccgcggccgccacgc 105893
>ref|XM_842631.1| Leishmania major strain Friedlin flagellar radial spoke protein (LMJ_0701) partial mRNA Length = 1773 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 ccgccgcggccgccacgccgc 239 ||||||||||||||||||||| Sbjct: 277 ccgccgcggccgccacgccgc 297
>ref|XM_502224.1| Yarrowia lipolytica CLIB122, YALI0C24398g predicted mRNA Length = 798 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 agcccgagcccgaggctgagg 388 ||||||||||||||||||||| Sbjct: 593 agcccgagcccgaggctgagg 613
>ref|XM_505045.1| Yarrowia lipolytica CLIB122, YALI0F05720g predicted mRNA Length = 366 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 gctgaagttctcctccttctc 486 ||||||||||||||||||||| Sbjct: 207 gctgaagttctcctccttctc 227
>emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chromosome 1p35.1-36.13 Contains the C1QA gene for complement component 1( q subcomponent, alpha polypeptide), the C1QG gene for complement component 1 (q subcomponent, gamma polypeptide), the C1QB gene for complement component 1 (q subcomponent, beta polypeptide), the 5' end of the EPHB2 gene for EphB2 and a CpG island, complete sequence Length = 87320 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 gcctgctctgctgtgctctgc 85 ||||||||||||||||||||| Sbjct: 53126 gcctgctctgctgtgctctgc 53106
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 319 gaggtggccgaggtggccgat 339 ||||||||||||||||||||| Sbjct: 3036008 gaggtggccgaggtggccgat 3035988 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gaggtggccgaggtggccga 338 |||||||||||||||||||| Sbjct: 3036044 gaggtggccgaggtggccga 3036025 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gaggtggccgaggtggccga 338 |||||||||||||||||||| Sbjct: 3036035 gaggtggccgaggtggccga 3036016 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gaggtggccgaggtggccga 338 |||||||||||||||||||| Sbjct: 3036026 gaggtggccgaggtggccga 3036007 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gaggtggccgaggtggccga 338 |||||||||||||||||||| Sbjct: 3036017 gaggtggccgaggtggccga 3035998
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 gcttgacgatctcgctgctgtcgat 432 |||||||||||||||||| |||||| Sbjct: 80887 gcttgacgatctcgctgccgtcgat 80911
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgc 236 ||||||||||||||||||||| Sbjct: 34846809 acgccgccgcggccgccacgc 34846829 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 ggcggcacgacgacggcggtg 457 ||||||||||||||||||||| Sbjct: 19956321 ggcggcacgacgacggcggtg 19956341
>gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genomic sequence, complete sequence Length = 137297 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 ggcggcacgacgacggcggtg 457 ||||||||||||||||||||| Sbjct: 115582 ggcggcacgacgacggcggtg 115602
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 ctcctcgaagaggaggtcgag 594 ||||||||||||||||||||| Sbjct: 110523 ctcctcgaagaggaggtcgag 110543
>dbj|AP001547.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-802F5, complete sequence Length = 144493 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gcctgctctgctgtgctctgc 85 ||||||||||||||||||||| Sbjct: 115464 gcctgctctgctgtgctctgc 115484
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 acgccgccgcggccgccacgc 236 ||||||||||||||||||||| Sbjct: 3418066 acgccgccgcggccgccacgc 3418046
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 gctgaagttctcctccttctc 486 ||||||||||||||||||||| Sbjct: 850887 gctgaagttctcctccttctc 850907
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 agcccgagcccgaggctgagg 388 ||||||||||||||||||||| Sbjct: 3252873 agcccgagcccgaggctgagg 3252853
>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map near S2137, complete sequence Length = 197516 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 175326 acgccgccgccgccgccacgccgc 175303
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cgccgccgcggccgccacgc 236 |||||||||||||||||||| Sbjct: 3198014 cgccgccgcggccgccacgc 3198033
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 cggcacgacgacggcggtga 458 |||||||||||||||||||| Sbjct: 2380719 cggcacgacgacggcggtga 2380738
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 620 tggatggacggcgtgtaggg 639 |||||||||||||||||||| Sbjct: 1175094 tggatggacggcgtgtaggg 1175113
>ref|XM_364410.1| Magnaporthe grisea 70-15 hypothetical protein (MG09255.4) partial mRNA Length = 4989 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 gagcccgagcccgaggctga 386 |||||||||||||||||||| Sbjct: 4123 gagcccgagcccgaggctga 4142
>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence Length = 175566 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 gcctgctctgctgtgctctg 84 |||||||||||||||||||| Sbjct: 7163 gcctgctctgctgtgctctg 7144
>ref|XM_865675.1| PREDICTED: Bos taurus similar to Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4), transcript variant 1 (LOC613955), mRNA Length = 1425 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcggccgccacgccgctgcc 243 |||||||||||||||||||| Sbjct: 110 gcggccgccacgccgctgcc 129
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cgccgccgcggccgccacgc 236 |||||||||||||||||||| Sbjct: 783136 cgccgccgcggccgccacgc 783117
>gb|AC148021.2| Mus musculus BAC clone RP23-9A7 from chromosome 19, complete sequence Length = 213178 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gcctgctctgctgtgctctg 84 |||||||||||||||||||| Sbjct: 6242 gcctgctctgctgtgctctg 6261
>gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, complete sequence Length = 171912 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 109 gcagggcacactgtacgtgtttgttctt 136 ||||| ||||||||| |||||||||||| Sbjct: 106185 gcaggacacactgtaggtgtttgttctt 106158
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ggtggccgaggtggccgatc 340 |||||||||||||||||||| Sbjct: 1519686 ggtggccgaggtggccgatc 1519705
>gb|AC140378.2| Mus musculus BAC clone RP24-84M18 from chromosome 19, complete sequence Length = 194681 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 gcctgctctgctgtgctctg 84 |||||||||||||||||||| Sbjct: 74034 gcctgctctgctgtgctctg 74015
>gb|AC124517.4| Mus musculus BAC clone RP23-387K15 from chromosome 13, complete sequence Length = 198825 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cctgctctgctgtgctctgc 85 |||||||||||||||||||| Sbjct: 75886 cctgctctgctgtgctctgc 75905
>gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosome 6, complete sequence Length = 210092 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 tctggaggggatgaggggcgtgga 204 ||||||||||||| |||||||||| Sbjct: 114645 tctggaggggatggggggcgtgga 114622
>ref|XM_844389.1| PREDICTED: Canis familiaris similar to DnaJ (Hsp40) homolog, subfamily C, member 1, transcript variant 1 (LOC607587), mRNA Length = 2085 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gaggtggccgaggtggccga 338 |||||||||||||||||||| Sbjct: 326 gaggtggccgaggtggccga 307
>gb|AC160107.2| Mus musculus BAC clone RP24-252N17 from chromosome 13, complete sequence Length = 178725 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 cctgctctgctgtgctctgc 85 |||||||||||||||||||| Sbjct: 6551 cctgctctgctgtgctctgc 6532
>emb|BX928753.10| Zebrafish DNA sequence from clone DKEY-5J3 in linkage group 17, complete sequence Length = 159225 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tgtgaaaattaactttacat 41 |||||||||||||||||||| Sbjct: 101036 tgtgaaaattaactttacat 101055
>gb|BT009343.1| Triticum aestivum clone wlm4.pk0021.h10:fis, full insert mRNA sequence Length = 1639 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacg 235 |||||||||||||||||||| Sbjct: 458 acgccgccgcggccgccacg 477
>emb|BX571872.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 14/17 Length = 348498 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 aaaattaactttacatacag 45 |||||||||||||||||||| Sbjct: 280903 aaaattaactttacatacag 280922
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gaggtggccgaggtggccga 338 |||||||||||||||||||| Sbjct: 219949 gaggtggccgaggtggccga 219968
>emb|AL663020.4|OSJN00220 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0049H08, complete sequence Length = 186642 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tggcggcacgacgacggcggtgac 459 ||||| |||||||||||||||||| Sbjct: 116929 tggcgacacgacgacggcggtgac 116906
>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05, complete sequence Length = 149134 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 tggcggcacgacgacggcgg 455 |||||||||||||||||||| Sbjct: 6500 tggcggcacgacgacggcgg 6481
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 ttgacgatctcgctgctgtcgatg 433 ||||||||||||| |||||||||| Sbjct: 418774 ttgacgatctcgccgctgtcgatg 418751
>emb|AL355532.10| Human DNA sequence from clone RP11-487F5 on chromosome 6 Contains the 3' part of the GRIK2 (glutamate receptor, ionotropic, kainate 2) gene, ESTs, STSs and GSSs, complete sequence Length = 181302 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tgcccagcagcagacccaagcagg 113 ||||||| |||||||||||||||| Sbjct: 29784 tgcccagaagcagacccaagcagg 29807
>emb|BX927328.10| Zebrafish DNA sequence from clone CH211-10M4 in linkage group 17, complete sequence Length = 197949 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tgtgaaaattaactttacat 41 |||||||||||||||||||| Sbjct: 30137 tgtgaaaattaactttacat 30156
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 gagcccgagcccgaggctga 386 |||||||||||||||||||| Sbjct: 1928458 gagcccgagcccgaggctga 1928477
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cggcggtgaccgtgtcgctg 469 |||||||||||||||||||| Sbjct: 4339463 cggcggtgaccgtgtcgctg 4339444
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tggcggcacgacgacggcggtgac 459 ||||| |||||||||||||||||| Sbjct: 17744553 tggcgacacgacgacggcggtgac 17744530 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 tggcggcacgacgacggcgg 455 |||||||||||||||||||| Sbjct: 6843629 tggcggcacgacgacggcgg 6843610
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 cgccgccgcggccgccacgccgct 240 ||||||||| |||||||||||||| Sbjct: 19481570 cgccgccgccgccgccacgccgct 19481593
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 8094707 acgccgccgccgccgccacgccgc 8094684
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tggcggcacgacgacggcggtgac 459 ||||| |||||||||||||||||| Sbjct: 13542497 tggcgacacgacgacggcggtgac 13542474
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 10827636 acgccgccgccgccgccacgccgc 10827659
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 cgacgacggcggtgaccgtg 463 |||||||||||||||||||| Sbjct: 25401954 cgacgacggcggtgaccgtg 25401973 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 9795031 acgccgccgccgccgccacgccgc 9795054
>gb|AC067738.17| Homo sapiens 3 BAC RP11-381H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 82883 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 agacccaagcagggcacactgtac 124 |||||||||||| ||||||||||| Sbjct: 20379 agacccaagcagtgcacactgtac 20356
>gb|AC027661.1| Oryza sativa (japonica cultivar-group) BAC nbxb0049A03 chromosome 10, complete sequence Length = 162101 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tggcggcacgacgacggcggtgac 459 ||||| |||||||||||||||||| Sbjct: 11499 tggcgacacgacgacggcggtgac 11476
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 85273 acgccgccgccgccgccacgccgc 85296
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ccgcggccgccacgccgctg 241 |||||||||||||||||||| Sbjct: 610583 ccgcggccgccacgccgctg 610602
>dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19 Length = 164483 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 cgacgacggcggtgaccgtg 463 |||||||||||||||||||| Sbjct: 75963 cgacgacggcggtgaccgtg 75982
>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0018O23 Length = 142143 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 38395 acgccgccgccgccgccacgccgc 38418
>dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0028O21 Length = 134543 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 4011 acgccgccgccgccgccacgccgc 4034
>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0455A11 Length = 158629 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 113711 acgccgccgccgccgccacgccgc 113734
>dbj|AK107643.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F04, full insert sequence Length = 2051 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 cgacgacggcggtgaccgtg 463 |||||||||||||||||||| Sbjct: 9 cgacgacggcggtgaccgtg 28
>dbj|AK099684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072A20, full insert sequence Length = 1406 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 cgccgccgcggccgccacgccgct 240 ||||||||| |||||||||||||| Sbjct: 73 cgccgccgccgccgccacgccgct 96
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cggcggtgaccgtgtcgctg 469 |||||||||||||||||||| Sbjct: 4346303 cggcggtgaccgtgtcgctg 4346284
>dbj|AP006198.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-410D4, complete sequence Length = 139671 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tgcccagcagcagacccaagcagg 113 ||||||| |||||||||||||||| Sbjct: 66739 tgcccagaagcagacccaagcagg 66762
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 564 tgtcgaggccctcctcgaagaggaggtc 591 |||||| ||||||||| ||||||||||| Sbjct: 2193162 tgtcgacgccctcctccaagaggaggtc 2193189 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 agttgcagctcgttgaggtggccg 328 ||||||||||||||||||| |||| Sbjct: 594728 agttgcagctcgttgaggtcgccg 594751
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 436 tggcggcacgacgacggcggtgac 459 ||||| |||||||||||||||||| Sbjct: 13549839 tggcgacacgacgacggcggtgac 13549816
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 acgccgccgcggccgccacgccgc 239 |||||||||| ||||||||||||| Sbjct: 8164537 acgccgccgccgccgccacgccgc 8164514
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 cgccgccgcggccgccacgccgct 240 ||||||||| |||||||||||||| Sbjct: 19407783 cgccgccgccgccgccacgccgct 19407806
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tccatgcgtgcttgacgatc 418 |||||||||||||||||||| Sbjct: 230822 tccatgcgtgcttgacgatc 230803
>emb|AL954828.3|CNS08CD4 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163490 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 cgccgccgcggccgccacgccgct 240 ||||||||| |||||||||||||| Sbjct: 159264 cgccgccgccgccgccacgccgct 159287
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 cgccgccgcggccgccacgccgct 240 ||||||||| |||||||||||||| Sbjct: 13751 cgccgccgccgccgccacgccgct 13774
>gb|AF005899.1|AF005899 Salmonella gallinarum virulence plasmid minor fimbrial subunit genes, complete cds Length = 3252 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 atggcggcacgacgacggcg 454 |||||||||||||||||||| Sbjct: 1983 atggcggcacgacgacggcg 2002
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ccgccgcggccgccacgccg 238 |||||||||||||||||||| Sbjct: 2677509 ccgccgcggccgccacgccg 2677528
>dbj|AP002530.2| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 3/4 Length = 300000 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tgcccagcagcagacccaagcagg 113 ||||||| |||||||||||||||| Sbjct: 152035 tgcccagaagcagacccaagcagg 152058
>dbj|AB042030.1| Homo sapiens genomic DNA, chromosome 6q21, BAC clone:610J6, complete sequence Length = 111927 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tgcccagcagcagacccaagcagg 113 ||||||| |||||||||||||||| Sbjct: 87059 tgcccagaagcagacccaagcagg 87082 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,189,413 Number of Sequences: 3902068 Number of extensions: 5189413 Number of successful extensions: 121259 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117487 Number of HSP's gapped (non-prelim): 3764 length of query: 677 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 654 effective length of database: 17,143,297,704 effective search space: 11211716698416 effective search space used: 11211716698416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)