ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal26l03 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 209 bits (533), Expect = 3e-54 Identities = 109/138 (78%), Positives = 109/138 (78%) Frame = -1 Query: 490 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPSLVIXXXXXXXVQTAQPYGPGGGVAFK 311 MSACVM LQRSKLGGVRPSARPSLVI VQTAQPYGPGGGVAFK Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60 Query: 310 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTXX 131 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT Sbjct: 61 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLA 120 Query: 130 XXXXXXXXLVYSTSALAS 77 LVYSTSALAS Sbjct: 121 GILLGGALLVYSTSALAS 138
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 128 bits (322), Expect = 7e-30 Identities = 61/92 (66%), Positives = 70/92 (76%) Frame = -1 Query: 355 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 176 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 175 VGGKTGLFLWAVTXXXXXXXXXXLVYSTSALA 80 VGG TGL +WAVT LVY+TSALA Sbjct: 106 VGGTTGLAIWAVTLVGILAGGALLVYNTSALA 137
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 128 bits (322), Expect = 7e-30 Identities = 61/92 (66%), Positives = 70/92 (76%) Frame = -1 Query: 355 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 176 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 175 VGGKTGLFLWAVTXXXXXXXXXXLVYSTSALA 80 VGG TGL +WAVT LVY+TSALA Sbjct: 106 VGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 125 bits (315), Expect = 5e-29 Identities = 59/92 (64%), Positives = 70/92 (76%) Frame = -1 Query: 355 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 176 +T +PYG G ++ ++GVDASGR KGKGVYQF DKYGANVDGYSPIY ++WSPSGDVY Sbjct: 44 KTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103 Query: 175 VGGKTGLFLWAVTXXXXXXXXXXLVYSTSALA 80 VGG TGL +WAVT LV++TSALA Sbjct: 104 VGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 123 bits (309), Expect = 2e-28 Identities = 64/139 (46%), Positives = 81/139 (58%), Gaps = 2/139 (1%) Frame = -1 Query: 490 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPS--LVIXXXXXXXVQTAQPYGPGGGVA 317 M+ VM +S + G+ +R S + ++ +P G GGG+ Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60 Query: 316 FKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 137 ++GVD+SGR GKGVYQF DKYGANVDGYSPIY EEW+P+GDVY GG TGL +WAVT Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120 Query: 136 XXXXXXXXXXLVYSTSALA 80 LVY+TSALA Sbjct: 121 LAGLLAGGALLVYNTSALA 139
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 121 bits (304), Expect = 9e-28 Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 3/140 (2%) Frame = -1 Query: 490 MSACVMXXXXXXXXXXXXLQRSKLGGVRPS---ARPSLVIXXXXXXXVQTAQPYGPGGGV 320 M+A VM ++++ G+ PS ARPS I ++T +P+G G + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGL-PSLTRARPSFKIVASGVKKIKTDKPFGINGSM 59 Query: 319 AFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAV 140 ++GVDASGR KG GVY++ DKYGANVDGYSPIY EWS SGDVY GG TGL +WAV Sbjct: 60 DLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAV 119 Query: 139 TXXXXXXXXXXLVYSTSALA 80 T LVY+TSALA Sbjct: 120 TLAGILAGGALLVYNTSALA 139
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 117 bits (292), Expect = 2e-26 Identities = 56/92 (60%), Positives = 66/92 (71%) Frame = -1 Query: 355 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 176 +T +P+G G + ++GVDASGR KG GVY+F DKYGANVDGYSPIY +EWS SGDVY Sbjct: 49 KTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108 Query: 175 VGGKTGLFLWAVTXXXXXXXXXXLVYSTSALA 80 GG TGL +WAVT LVY+TSALA Sbjct: 109 KGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 32.0 bits (71), Expect = 0.94 Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 9/103 (8%) Frame = +3 Query: 111 APPSRIPA---RVTAQRNSPVFPPT*TSPLGD-----HSSGVYIGLYPSTFAPYLSANW* 266 APP+ +PA V A PV P P+G + P A L+A+W Sbjct: 341 APPAHVPAVPAPVGAPDGGPVRLPGAAVPIGPGPRVADMRAAAVAAPPPESA--LAASWS 398 Query: 267 TPFPLATLPDASTPSLNATPPPG-P*GWAVWTFFAFLATMTND 392 P P D + P+ PP P GW W F M+ND Sbjct: 399 RPRPGVNGADPAVPAPAPAPPEASPAGWRPWRF-----RMSND 436
>EKI1_HUMAN (Q9HBU6) Ethanolamine kinase 1 (EC 2.7.1.82) (EKI 1)| Length = 452 Score = 30.4 bits (67), Expect = 2.7 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Frame = +1 Query: 4 VLTVIIRTIIHIVWCIAWFAAHRLRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKR 183 VL V + ++ +V +AW A+ + P + + + Q+E RE A S LQH R Sbjct: 71 VLVVAVAVVVVVVSAVAWAMANYIHVPPGSPEVPKLNVTVQDQEEHRCREGALSLLQHLR 130 Query: 184 RH---LETTLLVCI*GCTHQ 234 H E TL + G T++ Sbjct: 131 PHWDPQEVTLQLFTDGITNK 150
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 328 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 236 GGV +G A+ R+A+G + FADK GA+ Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 29.6 bits (65), Expect = 4.7 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = -3 Query: 308 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRLCWRKDGAVS-LGS 141 R R ++GS +GEG P+ VW W Q ++ R + +K KD V LG+ Sbjct: 63 RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115 Query: 140 DSCWNSA 120 + C++S+ Sbjct: 116 EHCYDSS 122
>ALB2_PEA (P08688) Albumin-2 (PA2)| Length = 231 Score = 29.6 bits (65), Expect = 4.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 325 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 230 G F+ G+DA+ R +GK VY F A +D Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145
>ZN440_HUMAN (Q8IYI8) Zinc finger protein 440| Length = 595 Score = 29.6 bits (65), Expect = 4.7 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 15/101 (14%) Frame = +1 Query: 52 AWFAAHRLRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETTLLVC------ 213 ++ A HR+ K +P E+Q+ + S+ +H+R H+ C Sbjct: 238 SYSATHRIHKRTH-----TGEKPYEYQECGKAFHSPRSYRRHERIHMGEKAYQCKECGKA 292 Query: 214 --------I*GCTHQHL-LHTCRQTGKHPSPWLPFQTHRRL 309 I TH L+ C+Q GK S FQTH RL Sbjct: 293 FTCPRYVRIHERTHSRKNLYECKQCGKALSSLTSFQTHVRL 333
>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| Length = 3034 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -3 Query: 386 GHSGQEGEEGPDCPTLRAWWWSGVQGRRRCVWKGSQGEGCLPVCRQVWSKC 234 GH GQ E D P + WW + V G C + +G P C + +C Sbjct: 1954 GHYGQYCENKVDLPCPKGWWGNPVCGPCHC----AVSQGFDPDCNKTNGQC 2000
>POLG_HCVGL (Q5EG65) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23)] (Fragment) Length = 828 Score = 29.6 bits (65), Expect = 4.7 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 90 APWLPKPMCSKPSYAPND 37 A WLP P S+PS+ PND Sbjct: 93 AGWLPSPRGSRPSWGPND 110
>METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 403 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -1 Query: 355 QTAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDG 227 QT QPYG V E V+A RVA G+ QFA G ++ G Sbjct: 138 QTGQPYGARFPVVTVEDWVNAQARVADRFGIRQFAAVMGGSLGG 181
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -1 Query: 307 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 188 G+ A+GR G F+ ++ G+SP Y+P WSP+ Sbjct: 27 GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 29.3 bits (64), Expect = 6.1 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = +3 Query: 156 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 323 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 259 Query: 324 PPPG 335 PP G Sbjct: 260 PPGG 263
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 29.3 bits (64), Expect = 6.1 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +3 Query: 114 PPSRIPARVTAQRNSPV---FPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 284 PP A T SP+ P SP G G+ P + SA+ P PLA Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570 Query: 285 TLPDASTPSLNATPPPG 335 P +P+LN PPG Sbjct: 571 RPPSTPSPTLNPGSPPG 587
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 126 IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 257 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638
>BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin| reductase subunit Z) Length = 487 Score = 28.9 bits (63), Expect = 7.9 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = +2 Query: 239 CSILVGKLVNTLPLGYPSRRIDAFLERHSTTRP 337 C+ L L N LPLG RIDA R +RP Sbjct: 396 CNALFDALFNILPLGTELDRIDATPSRRGDSRP 428
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 28.9 bits (63), Expect = 7.9 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +1 Query: 94 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 201 Y R + +P + QQ+ L + P QH+++H ++T Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,295,715 Number of Sequences: 219361 Number of extensions: 1840243 Number of successful extensions: 6269 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5698 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6242 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
