>TAF6_HUMAN (P49848) Transcription initiation factor TFIID subunit 6|
           (Transcription initiation factor TFIID 70 kDa subunit)
           (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80)
          Length = 677

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 495 PHPRPATPRLMCVPSPVEVEA---MSCGAALPPVHYPGKGQWAALSSCASAP 641
           P P P TP L+ VP  + +     +S  AA PP   P   ++  +SS +SAP
Sbjct: 497 PQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAP 548

>IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (IL-6R-beta)|
           (Interleukin 6 signal transducer) (Membrane glycoprotein
           130) (gp130) (CD130 antigen)
          Length = 918

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 278 DTIILVH-----QESPETSMEFTMYAKRGATTSVHRAMSPFMCGFILTTLMSGLWCGRSR 442
           DT+ +VH     +E  +   EFT    + A   +   + P    F+LTTL+  L+C   R
Sbjct: 584 DTLYMVHMAAYTEEGGKDGPEFTFTTLKFAQGEIEAIVVPVCLAFLLTTLLGVLFCFNKR 643

>MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 591

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +3

Query: 471 QPPACRTE---PHPRPATPRLMCVPSPVEVEAMSCGAALPPVH 590
           QPP  +T    P P PATP    VP+PV + A + G +    H
Sbjct: 404 QPPQQKTPLPGPPPPPATPTQTLVPAPVHLVATAGGGSTVIAH 446

>MSH5_RAT (Q6MG62) MutS protein homolog 5|
          Length = 831

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -2

Query: 435 RPHHSPLISVVKMKPHMKGLIALCTLVVAPLFAYMVNSMDVSGLSWCTRIMVSCGVSGAL 256
           RPH+SP I  V++K     L+ LC     P      NS D  G     +++     SG  
Sbjct: 543 RPHYSPCIQGVRIKNGRHPLMELCARTFVP------NSTDCGGDQGRVKVITGPNSSGKS 596

Query: 255 TY 250
            Y
Sbjct: 597 IY 598


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,684,627
Number of Sequences: 219361
Number of extensions: 2099497
Number of successful extensions: 5921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5907
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)