ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26k09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL022397.1|HS11C7 Human DNA sequence from clone CTA-11C7 on ... 42 2.0
2ref|XM_632583.1| Dictyostelium discoideum hypothetical protein (... 40 7.9
3emb|CT010522.7| Mouse DNA sequence from clone RP23-310H3 on chro... 40 7.9
4gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, com... 40 7.9
5gb|AC148562.3| Callicebus moloch clone LB5-363C5, complete sequence 40 7.9
6emb|BX927365.7| Zebrafish DNA sequence from clone DKEY-161P7 in ... 40 7.9
7emb|BX571661.1| Wolinella succinogenes, complete genome; segment... 40 7.9
8emb|AL645808.13| Mouse DNA sequence from clone RP23-427P14 on ch... 40 7.9
9gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, comp... 40 7.9
10gb|AC091155.5| Homo sapiens chromosome 17, clone CTD1-2306D4, co... 40 7.9
11gb|AC108131.2| Homo sapiens chromosome 16 clone RP11-337N9, comp... 40 7.9
12gb|AC022905.7| Homo sapiens chromosome 8, clone RP11-656G20, com... 40 7.9
13dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 7.9
14dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
16gb|AC135776.3| Homo sapiens chromosome 16 clone CTD-2144E22, com... 40 7.9
17gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O1... 40 7.9
18gb|AC108868.4| Homo sapiens BAC clone RP11-448J14 from 2, comple... 40 7.9
19gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423... 40 7.9
20gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, c... 40 7.9
21dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
22dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
23dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
24dbj|AP001306.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.9
25emb|AJ238716.1|RFL238716 Ruminococcus flavefaciens cesA gene 40 7.9
26emb|BX784029.5| Zebrafish DNA sequence from clone DKEY-21H14 in ... 40 7.9
27gb|BC084082.1| Xenopus laevis hypothetical LOC494997, mRNA (cDNA... 40 7.9
28gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 40 7.9
29emb|AJ246275.1|UCO246275 unclassified coccolithophorid CCMP 300 ... 40 7.9
30emb|AJ246263.1|PCA246263 Pleurochrysis carterae 18S rRNA gene, s... 40 7.9
31emb|AJ005180.1|LEAJ5180 Lycopersicon esculentum genomic RAPD ban... 40 7.9

>emb|AL022397.1|HS11C7 Human DNA sequence from clone CTA-11C7 on chromosome 1q32.1-32.3
             Contains part of the SYT14 gene for synaptotagmin XIV,
             complete sequence
          Length = 109302

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 541   attaacaaaaccataatgtttcctt 565
             ||||||||||||| |||||||||||
Sbjct: 27937 attaacaaaaccaaaatgtttcctt 27961



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>ref|XM_632583.1| Dictyostelium discoideum hypothetical protein (DDB0218841), partial
             mRNA
          Length = 13779

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   gaattaatttttcaccatgt 495
             ||||||||||||||||||||
Sbjct: 11266 gaattaatttttcaccatgt 11247



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>emb|CT010522.7| Mouse DNA sequence from clone RP23-310H3 on chromosome 16, complete
            sequence
          Length = 169798

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 311  gcaatctttcataccccaat 330
            ||||||||||||||||||||
Sbjct: 4846 gcaatctttcataccccaat 4827



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>gb|AC111103.7| Mus musculus chromosome 16, clone RP23-187G7, complete sequence
          Length = 222348

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    gcaatctttcataccccaat 330
              ||||||||||||||||||||
Sbjct: 111964 gcaatctttcataccccaat 111983



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>gb|AC148562.3| Callicebus moloch clone LB5-363C5, complete sequence
          Length = 217859

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    caagatggcatgtggagtac 141
              ||||||||||||||||||||
Sbjct: 108942 caagatggcatgtggagtac 108923



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>emb|BX927365.7| Zebrafish DNA sequence from clone DKEY-161P7 in linkage group 23,
              complete sequence
          Length = 229608

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    tacaaatttgaagtacaaga 120
              ||||||||||||||||||||
Sbjct: 165307 tacaaatttgaagtacaaga 165326



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>emb|BX571661.1| Wolinella succinogenes, complete genome; segment 5/7
          Length = 346613

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    catgtggagtacatcaaaaa 149
              ||||||||||||||||||||
Sbjct: 237086 catgtggagtacatcaaaaa 237105



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>emb|AL645808.13| Mouse DNA sequence from clone RP23-427P14 on chromosome 13 Contains the
             gene for a novel protein similar to myosin, light
             polypeptide kinase 2 Mylk2, a novel gene, the Wrnip gene
             for Werner syndrome homolog (human) interacting protein,
             the Serpinb1a gene for serine (or cysteine) proteinase
             inhibitor clade B (ovalbumin) member 1a, a Serpinb1
             pseudogene and a CpG island, complete sequence
          Length = 190673

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   gcatgtgtggcagaagggag 442
             ||||||||||||||||||||
Sbjct: 76758 gcatgtgtggcagaagggag 76739



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>gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, complete sequence
          Length = 155472

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     acacaaatccttgatacaaa 87
              ||||||||||||||||||||
Sbjct: 139909 acacaaatccttgatacaaa 139890



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>gb|AC091155.5| Homo sapiens chromosome 17, clone CTD1-2306D4, complete sequence
          Length = 144430

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    caagatggcatgtggagtac 141
              ||||||||||||||||||||
Sbjct: 135005 caagatggcatgtggagtac 134986



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>gb|AC108131.2| Homo sapiens chromosome 16 clone RP11-337N9, complete sequence
          Length = 151941

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   atttttcaccatgtactcat 501
             ||||||||||||||||||||
Sbjct: 86374 atttttcaccatgtactcat 86393



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>gb|AC022905.7| Homo sapiens chromosome 8, clone RP11-656G20, complete sequence
          Length = 184311

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 492    atgtactcatgtgcatgatcatat 515
              |||||||||||||||||| |||||
Sbjct: 170436 atgtactcatgtgcatgagcatat 170459



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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     tttgaagtacaagaccaaga 126
               ||||||||||||||||||||
Sbjct: 1481590 tttgaagtacaagaccaaga 1481609



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 538     tatattaacaaaaccataat 557
               ||||||||||||||||||||
Sbjct: 7763204 tatattaacaaaaccataat 7763185



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 466      atatgcaacagaattaattt 485
                ||||||||||||||||||||
Sbjct: 34647379 atatgcaacagaattaattt 34647398



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>gb|AC135776.3| Homo sapiens chromosome 16 clone CTD-2144E22, complete sequence
          Length = 168546

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 482  atttttcaccatgtactcat 501
            ||||||||||||||||||||
Sbjct: 4510 atttttcaccatgtactcat 4529



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>gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O15, complete sequence
          Length = 189042

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 492   atgtactcatgtgcatgatcatat 515
             |||||||||||||||||| |||||
Sbjct: 66227 atgtactcatgtgcatgagcatat 66250



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>gb|AC108868.4| Homo sapiens BAC clone RP11-448J14 from 2, complete sequence
          Length = 109290

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aaattacaaatttgaagtac 116
              ||||||||||||||||||||
Sbjct: 106440 aaattacaaatttgaagtac 106421



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>gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4,
              complete sequence
          Length = 266544

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    gaattaatttttcaccatgt 495
              ||||||||||||||||||||
Sbjct: 134471 gaattaatttttcaccatgt 134452



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>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence
          Length = 168509

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   caagatggcatgtggagtac 141
             ||||||||||||||||||||
Sbjct: 71205 caagatggcatgtggagtac 71224



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>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1116_E04
          Length = 94096

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  atatgcaacagaattaattt 485
            ||||||||||||||||||||
Sbjct: 4330 atatgcaacagaattaattt 4349



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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0091G06
          Length = 161851

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   tatattaacaaaaccataat 557
             ||||||||||||||||||||
Sbjct: 75702 tatattaacaaaaccataat 75683



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>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G06
          Length = 122580

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 466    atatgcaacagaattaattt 485
              ||||||||||||||||||||
Sbjct: 113994 atatgcaacagaattaattt 114013



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>dbj|AP001306.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MKA23
          Length = 70100

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   aaggtcatgtcttttcgaga 392
             ||||||||||||||||||||
Sbjct: 44083 aaggtcatgtcttttcgaga 44102



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>emb|AJ238716.1|RFL238716 Ruminococcus flavefaciens cesA gene
          Length = 2952

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   aaatgcccttgtgcatacca 43
            ||||||||||||||||||||
Sbjct: 1601 aaatgcccttgtgcatacca 1582



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>emb|BX784029.5| Zebrafish DNA sequence from clone DKEY-21H14 in linkage group 4, complete
              sequence
          Length = 219903

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    aaaccataatgtttccttca 567
              ||||||||||||||||||||
Sbjct: 177962 aaaccataatgtttccttca 177981



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>gb|BC084082.1| Xenopus laevis hypothetical LOC494997, mRNA (cDNA clone MGC:82159
            IMAGE:7012549), complete cds
          Length = 2350

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    tttttctgggattttattccntaaaat 27
            |||||||||||||||||| | ||||||
Sbjct: 2333 tttttctgggattttatttcttaaaat 2307



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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    caagatggcatgtggagtac 141
              ||||||||||||||||||||
Sbjct: 308282 caagatggcatgtggagtac 308263



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>emb|AJ246275.1|UCO246275 unclassified coccolithophorid CCMP 300 18S rRNA gene
          Length = 1802

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 aagtacaagaccaagatggc 130
           ||||||||||||||||||||
Sbjct: 510 aagtacaagaccaagatggc 491



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>emb|AJ246263.1|PCA246263 Pleurochrysis carterae 18S rRNA gene, strain von Stosch
          Length = 1808

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 aagtacaagaccaagatggc 130
           ||||||||||||||||||||
Sbjct: 511 aagtacaagaccaagatggc 492



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>emb|AJ005180.1|LEAJ5180 Lycopersicon esculentum genomic RAPD band 26
          Length = 2134

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 96  caaattacaaatttgaagtacaag 119
           |||||||||||| |||||||||||
Sbjct: 429 caaattacaaatatgaagtacaag 406


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,763,258
Number of Sequences: 3902068
Number of extensions: 5763258
Number of successful extensions: 97282
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97122
Number of HSP's gapped (non-prelim): 160
length of query: 583
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 560
effective length of database: 17,143,297,704
effective search space: 9600246714240
effective search space used: 9600246714240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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