>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150)
          Length = 1098

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
 Frame = -2

Query: 451 PVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEEV 272
           P T  P    + +  S+T S T+ ++ T   +               A T+ST   Q++ 
Sbjct: 261 PTTSSPAPAVSTSTSSSTPSSTTSTTTTATSV---------------AQTVSTPTTQDQT 305

Query: 271 PPAAPVLATPRLSTHPSMFTGLRLRLPTM-LPQPPRPRVTIYLPFTHFQPST 119
           P +A  +ATP +    S+ T  R   P   +PQP    +   +P +  QP+T
Sbjct: 306 PSSAVSVATPTV----SVSTPARTATPVQTVPQPHPQTLPPAVPHSVPQPTT 353

>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 895

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
 Frame = -2

Query: 451 PVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQS------QLKLMTTAPTISTR 290
           PV G+P         +T   G  I + TL  I+  +++ +      Q++   T P     
Sbjct: 361 PVPGKPTV-------TTRTRGAIIQTPTLGPIQPTRVSDAGTVVSGQIRATVTIPGY-VE 412

Query: 289 HKQEEVPPAA----PVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ 128
                 PP      P ++TP+ +T  +  +    R PT  P+ PR  PRVT   P T  +
Sbjct: 413 PTAVATPPTTTTKKPRVSTPKPATPSTDSSATTTRRPTKKPRTPRPVPRVTTKAPITRLE 472

Query: 127 ---PSTRSLT 107
              P TR  T
Sbjct: 473 TASPPTRIRT 482

>DAG1_CANFA (Q9TSZ6) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 892

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
 Frame = -2

Query: 460 VYAPVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQ 281
           +  P  G P   T ++E  TT  G    + T+           +   + T PT +T+   
Sbjct: 374 IQTPTLG-PIQPTRVSEAGTTVPGQIRPTMTIP-------GYVEPTAVATPPTTTTKK-- 423

Query: 280 EEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ---PSTR 116
                  P ++TP+ +T  +  +    R PT  P+ PR  PRVT   P T  +   P TR
Sbjct: 424 -------PRVSTPKPATPSTDSSTTTTRRPTKKPRTPRPVPRVTTKAPITRLETASPPTR 476

Query: 115 SLT 107
             T
Sbjct: 477 IRT 479

>FTF1B_DROME (Q05192) Nuclear hormone receptor FTZ-F1 beta (dHR39)|
          Length = 808

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 31/103 (30%), Positives = 41/103 (39%)
 Frame = -2

Query: 415 TERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEEVPPAAPVLATPRL 236
           TE    A    I  +   Q   Q  A ++LK+   APT S     +  PP      +P L
Sbjct: 172 TELENIAGEMQIQEKCYPQSNTQHHAATKLKV---APTQSDPINLKFEPPLGD--NSPLL 226

Query: 235 STHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSLT 107
           +      +G  L LPT     P P   I+  +TH  PS   LT
Sbjct: 227 AARSKSSSGGHLPLPTN----PSPDSAIHSVYTHSSPSQSPLT 265

>Y577_TREPA (O83586) Hypothetical protein TP0577|
          Length = 614

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 271 PPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRP 164
           PPA+  LA+P   THP +F   R     +L  PP P
Sbjct: 77  PPASSFLASPAAPTHP-LFATARTTAAQLLSTPPAP 111

>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
 Frame = +3

Query: 57  HYSRCNERALAKSITHTVKDLVDG--WKCVKGR*IVTRGRG----------GWGSMVGRR 200
           H SR   R+ +KS THT +           K R + +R R           G G    RR
Sbjct: 272 HRSRSRSRSRSKSQTHTTRSTTRSRSTSLTKTRALTSRSRSRGRSPTTCRRGGGRSPRRR 331

Query: 201 SRSPVNIDGCVLRR 242
           SRSP     C  +R
Sbjct: 332 SRSPSTSSSCTTQR 345

>DAG1_HUMAN (Q14118) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 895

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
 Frame = -2

Query: 460 VYAPVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQ 281
           +  P  G P   T ++E  TT  G    + T+           +   + T PT +T+   
Sbjct: 377 IQTPTLG-PIQPTRVSEAGTTVPGQIRPTMTIP-------GYVEPTAVATPPTTTTKK-- 426

Query: 280 EEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ---PSTR 116
                  P ++TP+ +T  +  T    R PT  P+ PR  PRVT  +  T  +   P TR
Sbjct: 427 -------PRVSTPKPATPSTDSTTTTTRRPTKKPRTPRPVPRVTTKVSITRLETASPPTR 479

Query: 115 SLT 107
             T
Sbjct: 480 IRT 482

>DAG1_MOUSE (Q62165) Dystroglycan precursor (Dystrophin-associated glycoprotein|
           1) [Contains: Alpha-dystroglycan (Alpha-DG);
           Beta-dystroglycan (Beta-DG)]
          Length = 893

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -2

Query: 313 TAPTISTRHKQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPF 140
           T PT +T+          P ++TP+ +T  +  +    R PT  P+ PR  PRVT   P 
Sbjct: 416 TPPTTTTKK---------PRVSTPKPATPSTDSSTTTTRRPTKKPRTPRPVPRVTTKAPI 466

Query: 139 THFQ---PSTRSLT 107
           T  +   P TR  T
Sbjct: 467 TRLETASPPTRIRT 480

>CD2_HUMAN (P06729) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Erythrocyte
           receptor) (Rosette receptor)
          Length = 351

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -2

Query: 349 QQLAQSQLKLMTTAPTISTRH---KQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLP 179
           Q+  ++  +L T A  ++T     K +++P + P    P  S HP    G R + P+  P
Sbjct: 240 QRSRRNDEELETRAHRVATEERGRKPQQIPASTP--QNPATSQHPPPPPGHRSQAPSHRP 297

Query: 178 QPPRPRV 158
            PP  RV
Sbjct: 298 PPPGHRV 304

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 28/115 (24%), Positives = 39/115 (33%)
 Frame = -2

Query: 445  TGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEEVPP 266
            T  PP  T  T   TT   + I++ T                 TT P+          P 
Sbjct: 1688 TPSPPTTTMTTPSPTTTPSSPITTTTTPS-------------STTTPSPPPTTMTTPSPT 1734

Query: 265  AAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSLTVC 101
              P   T  ++T P   T   L   T  P PP      + PF+   P+T  + +C
Sbjct: 1735 TTPSPPTTTMTTLPPTTTSSPL---TTTPLPPSITPPTFSPFSTTTPTTPCVPLC 1786

>SPD3_MOUSE (Q6P6N5) Sprouty-related, EVH1 domain-containing protein 3|
           (Spred-3)
          Length = 408

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = -2

Query: 421 ALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPT-ISTRHKQEEVPPAAPVLAT 245
           AL+  S T S +S SS        Q  A++   L +   +  S+ H ++E PP AP+   
Sbjct: 112 ALSRGSLTPSSSSSSSSPS-----QDTAETPCPLTSHVDSDSSSSHSRQETPPTAPIATV 166

Query: 244 PRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSL 110
              +  P + T  + R  +    PP       LPFT     + SL
Sbjct: 167 ESAAAFP-LATRPQRRRSSAQSYPP------LLPFTGIPEPSESL 204

>TYSY_PSEAE (Q9I6F1) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 264

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +1

Query: 337 ELAAAT*FVRAFLMKLRSLMQSLIFPLTPSNSAAFRLREHILTVWQDW 480
           +LAA    V      L+S++  L++ L  S + A+ L+EH +++W +W
Sbjct: 37  DLAAGFPLVTTKKCHLKSIVHELLWFLKGSTNIAY-LKEHGVSIWDEW 83

>PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor (EC 3.1.3.48)|
            (Receptor-linked protein-tyrosine phosphatase 99A)
            (DPTP99A)
          Length = 1301

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
 Frame = -2

Query: 361  QIR*QQLAQSQLKLMTTAPTISTRHKQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTML 182
            Q+   QL Q  L+          + +Q++       ++TP   T+PS+   L L  PT+ 
Sbjct: 1062 QLHMLQLQQQHLETQQQQQQQQQQQQQQQQTALNETVSTPSTDTNPSLLPILSLLPPTVA 1121

Query: 181  P-------QPPRPRVTIYLPFTHFQPSTRS 113
            P        PP P      P    Q S+ S
Sbjct: 1122 PLSSSSSTTPPTPSTPTPQPPQTIQLSSHS 1151

>ARMX4_HUMAN (Q5H9R4) Armadillo repeat-containing X-linked protein 4|
          Length = 360

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -2

Query: 271 PPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQP 173
           PP A V+A   L T  S  TGL  +LP  LPQP
Sbjct: 58  PPEAAVVAFEWLKT--STLTGLHPQLPLSLPQP 88

>LRIG3_MOUSE (Q6P1C6) Leucine-rich repeats and immunoglobulin-like domains protein|
            3 precursor
          Length = 1117

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 152  DCNPRP-RGLGKHGRETEPESSEH*RVRTEAGGSQHRRCWRHLLLLVPGTDCR 307
            DC PRP  G      E + ES E+ + RT+     HR  ++ +       DC+
Sbjct: 1059 DCQPRPCHGKSLSSPELDSESEENDKERTDFREENHRCTYQQIFHTYRTPDCQ 1111

>CGP1_SCHPO (P87049) G1/S-specific cyclin pas1|
          Length = 411

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = -2

Query: 454 APVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEE 275
           +P+    P+ T ++  ST  S  S+      Q+    + ++ ++    + T++T    E+
Sbjct: 229 SPILTMAPS-TPVSVGSTPPSTPSVLP-IAKQLAPMNVCKAHIQASNQSRTLTTASPPEQ 286

Query: 274 VPPAAPVLATPRLSTHPSMFTGL--RLRLPTMLPQPPR-PRVTIYLPFT 137
           +P     L  P++  +P +  G    L  P  LP  P  P+V +Y P T
Sbjct: 287 IP-----LMEPQVYVNPQVLPGRLSSLSKPVSLPPTPSSPKVGVYRPMT 330


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,522,398
Number of Sequences: 219361
Number of extensions: 1349757
Number of successful extensions: 4204
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4195
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)