ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal26i17 |
|---|---|
| Clone Library Name | barley_pub |
>UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2| Length = 367 Score = 76.6 bits (187), Expect = 5e-14 Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 6/127 (4%) Frame = -1 Query: 580 DDKKVMIPTQVILANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQGVV 401 D +K V+L ++F+ EL LL +L+ D+ EE K G + NV + + P GVV Sbjct: 241 DKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVV 300 Query: 400 LVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSI------KHALIRDYDAEVSRLERF 239 V+F + ++ CV M GR+F GR + AS DG + KH L D + E RLE+F Sbjct: 301 TVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTL-DDEEDEEKRLEKF 359 Query: 238 GEELEES 218 + LE S Sbjct: 360 ADWLENS 366
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 55.8 bits (133), Expect = 9e-08 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Frame = -1 Query: 547 ILANMFSPAELRNDETLLPELEVDVREEC-VKFGLIDNVKVCENHPQGVVLVKFKDRKDG 371 +L NMF+PAE + ELE DV+EEC K+G + ++ V N G + VKF++ Sbjct: 510 LLENMFNPAE-ETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNE-LGQIFVKFENADFA 567 Query: 370 LKCVEKMNGRWFGGRQIHAS 311 K + ++ RWFGGR I AS Sbjct: 568 EKAITGLHQRWFGGRTIKAS 587
>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor| 38 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 264 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Frame = -1 Query: 478 DVREECV-KFGLIDNVKVCEN---HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 314 DV EC K+G I+ + VC+N H G V +KF++ D K +N RWFGGR +++ Sbjct: 86 DVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYS 144
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/78 (35%), Positives = 43/78 (55%) Frame = -1 Query: 544 LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQGVVLVKFKDRKDGLK 365 L+NMF+P + + E++ DV EEC K G + ++ V +N QG V VK + Sbjct: 428 LSNMFNP-QTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA 486 Query: 364 CVEKMNGRWFGGRQIHAS 311 V ++GRWF G+ I A+ Sbjct: 487 AVNALHGRWFAGKMITAA 504
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/78 (35%), Positives = 43/78 (55%) Frame = -1 Query: 544 LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQGVVLVKFKDRKDGLK 365 L+NMF+P + + E++ DV EEC K G + ++ V +N QG V VK + Sbjct: 428 LSNMFNP-QTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA 486 Query: 364 CVEKMNGRWFGGRQIHAS 311 V ++GRWF G+ I A+ Sbjct: 487 AVNALHGRWFAGKMITAA 504
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 47.8 bits (112), Expect = 2e-05 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 7/98 (7%) Frame = -1 Query: 559 PTQVI-LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV------CENHPQGVV 401 PT+V+ L NM +P ELR++E LE D++EEC K+G++ +V++ E G V Sbjct: 316 PTEVLCLLNMVTPDELRDEEEYEDILE-DIKEECTKYGVVRSVEIPRPIEGVEVPGCGKV 374 Query: 400 LVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIKH 287 V+F D K + + GR F R + S D H Sbjct: 375 FVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYH 412
>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 239 Score = 46.6 bits (109), Expect = 6e-05 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = -1 Query: 457 KFGLIDNVKVCEN---HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 314 K+G ++ + VC+N H G V VKF+ +D K V +N RWF G+ IHA Sbjct: 91 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 141
>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 238 Score = 46.6 bits (109), Expect = 6e-05 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = -1 Query: 457 KFGLIDNVKVCEN---HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 314 K+G ++ + VC+N H G V VKF+ +D K V +N RWF G+ IHA Sbjct: 91 KYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 141
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 46.2 bits (108), Expect = 7e-05 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Frame = -1 Query: 589 GGHDDKKVMIPTQVI-LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV----- 428 GGH PT+V+ L NM P EL +DE E+ DVR+EC K+GL+ ++++ Sbjct: 371 GGH-------PTEVLCLMNMVLPEELLDDEEY-EEIVEDVRDECSKYGLVKSIEIPRPVD 422 Query: 427 -CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 320 E G + V+F D K ++ + GR F R + Sbjct: 423 GVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 459
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 46.2 bits (108), Expect = 7e-05 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Frame = -1 Query: 589 GGHDDKKVMIPTQVI-LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV----- 428 GGH PT+V+ L NM P EL +DE E+ DVR+EC K+GL+ ++++ Sbjct: 371 GGH-------PTEVLCLMNMVLPEELLDDEEY-EEIVEDVRDECSKYGLVKSIEIPRPVD 422 Query: 427 -CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 320 E G + V+F D K ++ + GR F R + Sbjct: 423 GVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVV 459
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 45.8 bits (107), Expect = 9e-05 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Frame = -1 Query: 583 HDDKKVMIPTQVI-LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHP-Q 410 H + VM+PT V+ L N+ L N+E +E DV+EEC K+G + ++ V + +P + Sbjct: 311 HIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVE-DVKEECQKYGPVVSLLVPKENPGR 369 Query: 409 GVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 G V V++ + D + + GR F G+ + A+ Sbjct: 370 GQVFVEYANAGDSKAAQKLLTGRMFDGKFVVAT 402
>YN26_YEAST (P53830) Hypothetical 32.3 kDa protein in SEC21-MRPL10 intergenic| region Length = 285 Score = 45.8 bits (107), Expect = 9e-05 Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Frame = -1 Query: 580 DDKKVMIPTQVILANMFSPAE-LRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQGV 404 D+ VI AN+F+ + ND+ + +++ D+ E C + G +D++ V N +G Sbjct: 175 DESLAKADRTVIFANVFNIYKSYTNDD--INDIQEDLLEGCEEIGQVDSISVSPN--KGE 230 Query: 403 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 314 V FK+ K L+C + M GR+F G+++ A Sbjct: 231 ATVVFKNNKVALQCCKIMTGRYFDGQKLLA 260
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 6/87 (6%) Frame = -1 Query: 544 LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV---CENHP---QGVVLVKFKD 383 L NM + ELR+DE LE DVREEC K+G++ ++++ ++HP G V V+F Sbjct: 393 LMNMVTEDELRSDEDYEEILE-DVREECSKYGIVRSLEIPRPYDDHPVPGVGKVFVEFAT 451 Query: 382 RKDGLKCVEKMNGRWFGGRQIHASEDD 302 D + + GR F R + S D Sbjct: 452 TSDCQRAQAALTGRKFANRTVVTSYYD 478
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Frame = -1 Query: 583 HDDKKVMIPTQVI-LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHP-Q 410 H + VM+PT V+ L N+ L N++ +E DV+EEC K+G + ++ V + +P + Sbjct: 311 HIEDLVMLPTPVLRLLNVLDDDYLENEDEYEDVVE-DVKEECQKYGPVVSLLVPKENPGR 369 Query: 409 GVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 G V V++ + D + + GR F G+ + A+ Sbjct: 370 GQVFVEYANAGDSKAAQKLLTGRMFDGKFVVAT 402
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Frame = -1 Query: 583 HDDKKVMIPTQVI-LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHP-Q 410 H + VM+PT V+ L N+ L N++ +E DV+EEC K+G + ++ V + +P + Sbjct: 311 HIEDLVMLPTPVLRLLNVLDDDYLENEDEYEDVVE-DVKEECQKYGPVVSLLVPKENPGR 369 Query: 409 GVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 G V V++ + D + + GR F G+ + A+ Sbjct: 370 GQVFVEYANAGDSKAAQKLLTGRMFDGKFVVAT 402
>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 401 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 6/88 (6%) Frame = -1 Query: 559 PTQVILA-NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCE-----NHPQGVVL 398 PT+V+L NM E+ D LEV+ +EEC K+G + + E + + Sbjct: 303 PTKVVLLRNMVGAGEVDED------LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIF 356 Query: 397 VKFKDRKDGLKCVEKMNGRWFGGRQIHA 314 ++F+ + +K V +NGR+FGGR + A Sbjct: 357 LEFERVESAIKAVVDLNGRYFGGRVVKA 384
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 6/88 (6%) Frame = -1 Query: 559 PTQVILA-NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCE-----NHPQGVVL 398 PT+V+L NM E+ D LEV+ +EEC K+G + + E + + Sbjct: 307 PTKVVLLRNMVGAGEVDED------LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIF 360 Query: 397 VKFKDRKDGLKCVEKMNGRWFGGRQIHA 314 ++F+ + +K V +NGR+FGGR + A Sbjct: 361 LEFERVESAIKAVVDLNGRYFGGRVVKA 388
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 44.3 bits (103), Expect = 3e-04 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 11/97 (11%) Frame = -1 Query: 550 VILANMFSPAELRNDETLLPELEVDVREECVKFG-----LIDNVKVCENHPQGV------ 404 +IL NM P ++ DETL E++ EEC KFG +I N K EN Sbjct: 539 IILRNMVGPEDV--DETLQEEIQ----EECSKFGTVSRVIIFNEKQTENEDDDEAEIIVK 592 Query: 403 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSI 293 + V+F + ++ E ++GR+FGGR++ A D I Sbjct: 593 IFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGI 629
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%) Frame = -1 Query: 544 LANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKV---CENHP---QGVVLVKFKD 383 L NM + EL+ D+ LE DVR+EC K+G++ ++++ E+HP G V V+F Sbjct: 402 LMNMVTEDELKADDEYEEILE-DVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFAS 460 Query: 382 RKDGLKCVEKMNGRWFGGRQIHASEDD 302 D + + GR F R + S D Sbjct: 461 TSDCQRAQAALTGRKFANRTVVTSYYD 487
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Frame = -1 Query: 559 PTQVILA-NMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCEN-------HPQGV 404 PT+V+L NM P ++ + ELE +V EC K+G + V + E H Sbjct: 281 PTRVLLLRNMVGPGQVDD------ELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVR 334 Query: 403 VLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 + V+F ++ K + ++GR+FGGR + A+ Sbjct: 335 IFVQFSRPEETTKALVDLDGRYFGGRTVRAT 365
>U2AF1_SCHPO (Q09176) Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor| 23 kDa subunit) (U2 snRNP auxiliary factor small subunit) (U2AF23) Length = 216 Score = 38.1 bits (87), Expect = 0.020 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -1 Query: 466 ECVKFGLIDNVKVCEN---HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHA 314 E K+G ++ + VC+N H G V V+FK + ++ +N RW+ R ++A Sbjct: 83 EFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYA 136
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 36.6 bits (83), Expect = 0.057 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Frame = -1 Query: 499 LLPELEV-DVREECVKFGLIDNVKVCEN----HPQGVVLVKFKDRKDGLKCVEKMNGRWF 335 L PE+ D++ FG I + +V ++ +G V F ++ D +++M G+W Sbjct: 113 LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 172 Query: 334 GGRQIHAS 311 GGRQI + Sbjct: 173 GGRQIRTN 180
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 35.4 bits (80), Expect = 0.13 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = -1 Query: 499 LLPELEV-DVREECVKFGLIDNVKVCEN----HPQGVVLVKFKDRKDGLKCVEKMNGRWF 335 L PE+ D++ FG I + +V ++ +G V F ++ D + M G+W Sbjct: 104 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 163 Query: 334 GGRQIHAS 311 GGRQI + Sbjct: 164 GGRQIRTN 171
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Frame = -1 Query: 478 DVREECVKFGLIDNVKVCEN----HPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 D++ FG I + +V ++ +G V F ++ D +++M G+W GGRQI + Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 35.4 bits (80), Expect = 0.13 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = -1 Query: 499 LLPELEV-DVREECVKFGLIDNVKVCEN----HPQGVVLVKFKDRKDGLKCVEKMNGRWF 335 L PE+ D++ FG I + +V ++ +G V F ++ D + M G+W Sbjct: 121 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180 Query: 334 GGRQIHAS 311 GGRQI + Sbjct: 181 GGRQIRTN 188
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 33.9 bits (76), Expect = 0.37 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -1 Query: 478 DVREECVKFGLIDNVKV----CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 D+R E ++G I +V + P+G V+F+D +D + +N +W GRQI Sbjct: 25 DLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQ 84 Query: 310 EDDGSIK 290 G K Sbjct: 85 FAQGDRK 91
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 33.5 bits (75), Expect = 0.49 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -1 Query: 478 DVREECVKFGLIDNVKV----CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 D+R E ++G I +V V P+G V+F+D +D + ++ +W GRQI Sbjct: 25 DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQ 84 Query: 310 EDDGSIK 290 G K Sbjct: 85 FAQGDRK 91
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 33.5 bits (75), Expect = 0.49 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -1 Query: 478 DVREECVKFGLIDNVKV----CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 D+R E ++G I +V V P+G V+F+D +D + ++ +W GRQI Sbjct: 25 DLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQ 84 Query: 310 EDDGSIK 290 G K Sbjct: 85 FAQGDRK 91
>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) Length = 462 Score = 33.5 bits (75), Expect = 0.49 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = -1 Query: 478 DVREECVKFGLIDNVKVC---ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 320 DV E G + KV E H +G V V+++ +D NGRW+ GRQ+ Sbjct: 246 DVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQL 301
>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) (NY-REN-20 antigen) Length = 482 Score = 32.7 bits (73), Expect = 0.83 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -1 Query: 478 DVREECVKFGLIDNVKVC---ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 320 DV E G + KV E H +G V V+++ ++ + NGRW+ GRQ+ Sbjct: 242 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQL 297
>U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) (SP2) Length = 428 Score = 32.7 bits (73), Expect = 0.83 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -1 Query: 478 DVREECVKFGLIDNVKVC---ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 320 DV E G + KV E H +G V V+++ ++ + NGRW+ GRQ+ Sbjct: 233 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQL 288
>U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) Length = 479 Score = 32.7 bits (73), Expect = 0.83 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -1 Query: 478 DVREECVKFGLIDNVKVC---ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 320 DV E G + KV E H +G V V+++ ++ + NGRW+ GRQ+ Sbjct: 247 DVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQL 302
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = -1 Query: 412 QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIKHALIRDYDAEVSRLER 242 QG +K++D++ + V+ +NG GGR + K +L + Y+A L+R Sbjct: 72 QGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRSLQKYYEAVKEELDR 128
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -1 Query: 457 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 317 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -1 Query: 478 DVREECVKFGLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDG 299 D+ E K+G +++V + N P G V+F+ R D K + +NG G Q+ G Sbjct: 22 DLEGEFTKYGKLNSVWIAFN-PPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEISKG 80
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -1 Query: 457 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 317 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -1 Query: 457 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 317 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -1 Query: 457 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 317 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -1 Query: 457 KFGLIDNVKVCENHP---QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 317 KFG +VKV + +G V F+ +D K V++MNG+ G+QI+ Sbjct: 213 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
>IF2_ANAMM (Q5PAJ5) Translation initiation factor IF-2| Length = 832 Score = 31.6 bits (70), Expect = 1.8 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 12/122 (9%) Frame = -1 Query: 550 VILANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQGVVLVKFK----D 383 V+ N+ A+ R+ L+ + +VD+R V + LID+VK GVV K K + Sbjct: 685 VLAFNVKVDAQARD---LVRQKDVDIRHHRVIYDLIDDVK-------GVVCGKLKPIIRE 734 Query: 382 RKDGLKCVEKMNGRWFGGRQIHASEDDGSI-KHALIRDY-------DAEVSRLERFGEEL 227 + GL V ++ GG I +G++ + AL++ Y + +V L RF +++ Sbjct: 735 VQVGLLVVREVFSSGKGGTVIGCYVSEGAVSRGALVKIYRNDAVTCEGKVKVLRRFKDDV 794 Query: 226 EE 221 +E Sbjct: 795 KE 796
>RS8_STRPM (Q48VT5) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -1 Query: 451 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 302 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>RS8_STRP8 (P66636) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -1 Query: 451 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 302 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>RS8_STRP6 (Q5XEC1) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -1 Query: 451 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 302 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>RS8_STRP3 (P66635) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -1 Query: 451 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 302 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>RS8_STRP1 (P66634) 30S ribosomal protein S8| Length = 132 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = -1 Query: 451 GLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDD 302 G + NV+V E+ QG++ V K K+G + + + G +++A DD Sbjct: 44 GFVKNVEVIEDDKQGIIRVFLKYGKNGERVITNLKRISKPGLRVYAKRDD 93
>SNX41_YEAST (Q04053) Sorting nexin-41| Length = 625 Score = 30.8 bits (68), Expect = 3.2 Identities = 25/93 (26%), Positives = 42/93 (45%) Frame = +2 Query: 323 LPPTKPSSVHLLYAFETIFAVFEFYQYNSLWMIFTNLDIVDQTKLHTFLSNIYLKFRKKG 502 L PTKPS +H + + ++ YNS+W + K H +SN+ + + Sbjct: 257 LSPTKPSPLHSILPIPSNSSL---RNYNSIWQQHITV------KSHNEISNLPTEILQNE 307 Query: 503 FIISQFSRTEHIRQNHLSRNHHLLIIMSTPSQH 601 SQF+ E++ QN+ HLL + + H Sbjct: 308 ---SQFTHIENLFQNYKRIITHLLKNIRSNKSH 337
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = -1 Query: 484 EVDVREECVKFGLIDNVKV---CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIH 317 E DVRE KFG++ V V + H +G +++++ L + +G F GR +H Sbjct: 321 EDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAAFQ-TDGTVFQGRIVH 378
>TEGU_HCMV (P07387) Tegument protein (67 kDa phosphorylated protein)| Length = 549 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 231 SSPKRSSLDTSAS*SRMRACLIEPSSSLACICLPPNHLP 347 SSP R S++ + CL+ S++CI PPN P Sbjct: 400 SSPLREGTSGSSAHRPKQQCLLHCHQSISCILFPPNSSP 438
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 30.4 bits (67), Expect = 4.1 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -1 Query: 457 KFGLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDG 299 K+G + NV V N P G V+F+DR+D ++G G +I G Sbjct: 33 KYGPLRNVWVARN-PPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSG 84
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 30.0 bits (66), Expect = 5.4 Identities = 24/90 (26%), Positives = 39/90 (43%) Frame = -1 Query: 589 GGHDDKKVMIPTQVILANMFSPAELRNDETLLPELEVDVREECVKFGLIDNVKVCENHPQ 410 GG +D+KV + N+ P ++R E +V + K+G I V + Sbjct: 4 GGSEDQKVYV------GNL--PGDVR---------EKEVEDIFHKYGRIKYVDIKSGRGP 46 Query: 409 GVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 320 V+F+D +D V +G F GR+I Sbjct: 47 AFAFVEFEDHRDAEDAVRARDGYEFDGRRI 76
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 30.0 bits (66), Expect = 5.4 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 11/91 (12%) Frame = -1 Query: 454 FGLIDNVKVC--ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIKHAL 281 FG I + KV EN +G V F+ ++ K +EKMNG R++ G K Sbjct: 122 FGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----GRFKSR- 176 Query: 280 IRDYDAEVSR---------LERFGEELEEST 215 ++ +AE+ ++ FGEE+++ + Sbjct: 177 -KEREAELGAKAKEFTNVYIKNFGEEVDDES 206
>EFTU_FLAFE (P42476) Elongation factor Tu (EF-Tu)| Length = 395 Score = 30.0 bits (66), Expect = 5.4 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -1 Query: 571 KVMIPTQVILANMFSPAELRNDETLLPELEVDVREECVKFGLI-DNVKVCENHPQGVV 401 +V +P V+ N +L +DE LL +E++VREE K G DN + + G + Sbjct: 125 QVGVPKMVVFLNK---VDLVDDEELLELVEIEVREELTKRGFDGDNTPIIKGSATGAL 179
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 29.6 bits (65), Expect = 7.0 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 12/96 (12%) Frame = -1 Query: 571 KVMIPTQVILANMFSPAELRNDETL-------LPELEVDVREECVK-----FGLIDNVKV 428 KV + V+ P E + E + + L V EE ++ FG ++ VK Sbjct: 313 KVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKK 372 Query: 427 CENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQI 320 +++ V F+DR +K +++MNG+ G +I Sbjct: 373 LKDY----AFVHFEDRGAAVKAMDEMNGKEIEGEEI 404
>ASXL1_HUMAN (Q8IXJ9) Putative Polycomb group protein ASXL1 (Additional sex| combs-like protein 1) Length = 1541 Score = 29.6 bits (65), Expect = 7.0 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -3 Query: 446 DRQCQGL*KSSTRSCIGK--IQRPQRWSQMRREDERKMVWWEADTRERG 306 D+ CQ L S+++ + + +++PQ +R E E WE+D E+G Sbjct: 756 DQPCQALPLLSSQTSVAERLVEQPQLHPDVRTECESGTTSWESDDEEQG 804
>Y2992_CORGL (Q8NLF0) UPF0176 protein Cgl2992/cg3319| Length = 312 Score = 29.6 bits (65), Expect = 7.0 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = -1 Query: 493 PELEVDVREECVKFGLIDNVKVCEN 419 P+L V VR+E V FG D +KV EN Sbjct: 85 PKLSVKVRDEIVAFGAPDELKVDEN 109
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 29.3 bits (64), Expect = 9.2 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -1 Query: 454 FGLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDG 299 +G + +V V N P G V+F+D +D V +++GR G ++ +G Sbjct: 33 YGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 29.3 bits (64), Expect = 9.2 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -1 Query: 454 FGLIDNVKVCENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDG 299 +G + +V V N P G V+F+D +D V +++GR G ++ +G Sbjct: 33 YGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 83
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -1 Query: 478 DVREECVKFGLIDNVKVCENHP----QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHAS 311 D++ +FG + + K+ + +G V FKD K +E+MNG+ GR I + Sbjct: 21 DLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80 Query: 310 E 308 E Sbjct: 81 E 81
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 29.3 bits (64), Expect = 9.2 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -1 Query: 424 ENHPQGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASEDDGSIK 290 E +G V FKD LK + NG++ G R + S +K Sbjct: 66 EGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVK 110
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 29.3 bits (64), Expect = 9.2 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = -1 Query: 457 KFGLIDNVKVCENHP----QGVVLVKFKDRKDGLKCVEKMNGRWFGGRQIHASE 308 +FG I + K+ + +G V FKD K +E MNG+ GR I +E Sbjct: 28 QFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNE 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,819,217 Number of Sequences: 219361 Number of extensions: 1677778 Number of successful extensions: 4591 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 4434 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4585 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
