ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26i17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111787.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 5e-75
2ref|XM_473032.1| Oryza sativa (japonica cultivar-group), predic... 285 8e-74
3gb|AY107982.1| Zea mays PCO075833 mRNA sequence 178 1e-41
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 103 7e-19
5emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 103 7e-19
6emb|AJ299246.1|NTA299246 Nicotiana tabacum partial mRNA for hypo... 48 0.034
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
8dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
9dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
10gb|AC111145.7| Mus musculus chromosome 1, clone RP23-373L1, comp... 44 0.53
11gb|AC108424.14| Mus musculus chromosome 7, clone RP23-105A10, co... 42 2.1
12ref|XM_452996.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C17820g ... 42 2.1
13gb|AC157790.10| Mus musculus chromosome 7, clone RP24-151M10, co... 42 2.1
14emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 42 2.1
15emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 2.1
16emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 i... 42 2.1
17emb|AL160237.4|CNS01RH1 Human chromosome 14 DNA sequence BAC R-3... 42 2.1
18emb|AL135999.4|CNS01DVP Human chromosome 14 DNA sequence BAC R-6... 42 2.1
19emb|AL928818.8| Mouse DNA sequence from clone RP23-309M6 on chro... 42 2.1
20gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosom... 40 8.2
21gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosom... 40 8.2
22gb|AC123841.4| Mus musculus BAC clone RP23-400M7 from chromosome... 40 8.2
23gb|AC140915.6| Medicago truncatula clone mth2-10l24, complete se... 40 8.2
24emb|AL391216.10| Human DNA sequence from clone RP11-241C9 on chr... 40 8.2
25emb|AL954353.14| Mouse DNA sequence from clone RP23-156D8 on chr... 40 8.2
26gb|AC118277.5| Homo sapiens BAC clone RP11-580L23 from 4, comple... 40 8.2
27emb|BX546460.6| Zebrafish DNA sequence from clone RP71-84C10, co... 40 8.2
28gb|AC022206.3| Homo sapiens BAC clone RP11-545E8 from 16, comple... 40 8.2
29gb|AC098656.2| Homo sapiens chromosome 1 clone RP11-297I23, comp... 40 8.2
30gb|AC067982.6| Homo sapiens chromosome 8, clone RP11-125E23, com... 40 8.2
31gb|AY946008.1| Homo sapiens peripheral clock protein 2 (ERIH2) m... 40 8.2
32gb|AY946007.1| Homo sapiens peripheral clock protein 1 (ERIH1) m... 40 8.2
33dbj|AB168516.1| Macaca fascicularis testis cDNA clone: QtsA-1271... 40 8.2
34dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
35gb|AC025828.3|AC025828 Homo sapiens, clone RP11-13I24, complete ... 40 8.2
36gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold 40 8.2
37gb|AC016909.9| Homo sapiens BAC clone RP11-458A7 from 2, complet... 40 8.2
38gb|AC073263.5| Homo sapiens BAC clone RP11-287D1 from 2, complet... 40 8.2
39gb|AC156288.5| Mus musculus 6 BAC RP24-246G10 (Roswell Park Canc... 40 8.2
40gb|AC152943.1| Mus musculus 10 BAC RP23-225G5 (Roswell Park Canc... 40 8.2
41dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
42dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
43emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 i... 40 8.2
44gb|AC142557.3| Cercopithecus aethiops clone CH252-402M4, complet... 40 8.2
45gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, comple... 40 8.2
46gb|AC129184.3| Mus musculus BAC clone RP23-358F24 from 5, comple... 40 8.2 
>dbj|AK111787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095H18, full
            insert sequence
          Length = 1941

 Score =  289 bits (146), Expect = 5e-75
 Identities = 326/386 (84%)
 Strand = Plus / Minus

                                                                        
Query: 210  tgctatgtggattcttccaactcttctccaaagcgctccagccttgacacctcagcgtcg 269
            ||||||||||| ||||| |||||||||||||| || || |||||||||||||| || || 
Sbjct: 1584 tgctatgtggactcttctaactcttctccaaatcgatcaagccttgacacctctgcatca 1525

                                                                        
Query: 270  tagtcacggatgagagcgtgtttgatcgaaccgtcatcctcgctcgcgtgtatctgcctc 329
            || |||||||| ||||| || ||||| ||||||||||| || ||||| || || ||  ||
Sbjct: 1524 taatcacggatcagagcatggttgatagaaccgtcatcttcactcgcctggatttgattc 1465

                                                                        
Query: 330  ccaccaaaccatcttccgttcatcttctctacgcatttgagaccatctttgcggtctttg 389
            ||||||||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||
Sbjct: 1464 ccaccaaaccatcttccattcatcttctctatgcatttgataccatctttccggtctttg 1405

                                                                        
Query: 390  aattttaccaatacaactccttgtggatgattttcacaaaccttgacattgtcgatcaga 449
            ||||| ||||| | ||| || | ||||||||||||||| ||||||||||| || |   ||
Sbjct: 1404 aatttcaccaaaataacaccctctggatgattttcacagaccttgacattatcaactgga 1345

                                                                        
Query: 450  ccaaacttcacacattcctctctaacatctacctcaagttcaggaagaagggtttcatca 509
            |||| |||||  ||||| |||||||||||| ||||||| || |||||||| |||||||| 
Sbjct: 1344 ccaagcttcatgcattcttctctaacatctgcctcaagctcgggaagaagagtttcatcg 1285

                                                                        
Query: 510  tttctcaattcagcaggactgaacatattcgccaaaatcacctgagtaggaatcatcacc 569
              || ||||||||||||| ||||||||| |  |||||| ||   ||| | |||| |||||
Sbjct: 1284 gctcgcaattcagcaggagtgaacatatgcctcaaaataactgtagttgtaatcgtcacc 1225

                                      
Query: 570  ttcttatcatcatgtccaccccatcc 595
            ||||| ||||||||||||||||||||
Sbjct: 1224 ttcttgtcatcatgtccaccccatcc 1199
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>ref|XM_473032.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1431

 Score =  285 bits (144), Expect = 8e-74
 Identities = 324/384 (84%)
 Strand = Plus / Minus

                                                                        
Query: 212  ctatgtggattcttccaactcttctccaaagcgctccagccttgacacctcagcgtcgta 271
            ||||||||| ||||| |||||||||||||| || || |||||||||||||| || || ||
Sbjct: 1431 ctatgtggactcttctaactcttctccaaatcgatcaagccttgacacctctgcatcata 1372

                                                                        
Query: 272  gtcacggatgagagcgtgtttgatcgaaccgtcatcctcgctcgcgtgtatctgcctccc 331
             |||||||| ||||| || ||||| ||||||||||| || ||||| || || ||  ||||
Sbjct: 1371 atcacggatcagagcatggttgatagaaccgtcatcttcactcgcctggatttgattccc 1312

                                                                        
Query: 332  accaaaccatcttccgttcatcttctctacgcatttgagaccatctttgcggtctttgaa 391
            ||||||||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 1311 accaaaccatcttccattcatcttctctatgcatttgataccatctttccggtctttgaa 1252

                                                                        
Query: 392  ttttaccaatacaactccttgtggatgattttcacaaaccttgacattgtcgatcagacc 451
            ||| ||||| | ||| || | ||||||||||||||| ||||||||||| || |   ||||
Sbjct: 1251 tttcaccaaaataacaccctctggatgattttcacagaccttgacattatcaactggacc 1192

                                                                        
Query: 452  aaacttcacacattcctctctaacatctacctcaagttcaggaagaagggtttcatcatt 511
            || |||||  ||||| |||||||||||| ||||||| || |||||||| ||||||||   
Sbjct: 1191 aagcttcatgcattcttctctaacatctgcctcaagctcgggaagaagagtttcatcggc 1132

                                                                        
Query: 512  tctcaattcagcaggactgaacatattcgccaaaatcacctgagtaggaatcatcacctt 571
            || ||||||||||||| ||||||||| |  |||||| ||   ||| | |||| |||||||
Sbjct: 1131 tcgcaattcagcaggagtgaacatatgcctcaaaataactgtagttgtaatcgtcacctt 1072

                                    
Query: 572  cttatcatcatgtccaccccatcc 595
            ||| ||||||||||||||||||||
Sbjct: 1071 cttgtcatcatgtccaccccatcc 1048
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>gb|AY107982.1| Zea mays PCO075833 mRNA sequence
          Length = 617

 Score =  178 bits (90), Expect = 1e-41
 Identities = 222/266 (83%)
 Strand = Plus / Plus

                                                                       
Query: 213 tatgtggattcttccaactcttctccaaagcgctccagccttgacacctcagcgtcgtag 272
           |||||||||||||| |||||||||||||| || ||||| ||||||||||| || ||||| 
Sbjct: 348 tatgtggattcttctaactcttctccaaatcggtccagtcttgacacctctgcatcgtaa 407

                                                                       
Query: 273 tcacggatgagagcgtgtttgatcgaaccgtcatcctcgctcgcgtgtatctgcctccca 332
           |||||||| ||||  || || |  ||||| ||||| || ||||| || || |||  ||||
Sbjct: 408 tcacggataagagtatggttaacagaaccatcatcttcactcgcatggatttgctgccca 467

                                                                       
Query: 333 ccaaaccatcttccgttcatcttctctacgcatttgagaccatctttgcggtctttgaat 392
            |||||||||| |||||||||||||||| |||||||  ||||||||| |  |||||||||
Sbjct: 468 gcaaaccatctaccgttcatcttctctatgcatttggcaccatcttttctatctttgaat 527

                                                                       
Query: 393 tttaccaatacaactccttgtggatgattttcacaaaccttgacattgtcgatcagacca 452
           || ||||| |  || || ||||||||||||||||||||||||||||| || |   |||||
Sbjct: 528 ttcaccaaaatgacaccctgtggatgattttcacaaaccttgacattatccacaggacca 587

                                     
Query: 453 aacttcacacattcctctctaacatc 478
           ||||| |  |||||||||||||||||
Sbjct: 588 aacttgatgcattcctctctaacatc 613
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  103 bits (52), Expect = 7e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                            
Query: 337      accatcttccgttcatcttctctacgcatttgagaccatctttgcggtctttgaatttta 396
                |||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||| |
Sbjct: 24814258 accatcttccattcatcttctctatgcatttgataccatctttccggtctttgaatttca 24814199

                                                    
Query: 397      ccaatacaactccttgtggatgattttcacaaacct 432
                |||| | ||| || | ||||||||||||||| ||||
Sbjct: 24814198 ccaaaataacaccctctggatgattttcacagacct 24814163



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                            
Query: 210      tgctatgtggattcttccaactcttctccaaagcgctccagccttgacacctcagcgtcg 269
                ||||||||||| ||||| |||||||||||||| || || |||||||||||||| || || 
Sbjct: 24814664 tgctatgtggactcttctaactcttctccaaatcgatcaagccttgacacctctgcatca 24814605

                                                                            
Query: 270      tagtcacggatgagagcgtgtttgatcgaaccgtcatcctcgctcgcgtgtatctgcctc 329
                || |||||||| ||||| || ||||| ||||||||||| || ||||| || || ||  ||
Sbjct: 24814604 taatcacggatcagagcatggttgatagaaccgtcatcttcactcgcctggatttgattc 24814545

                          
Query: 330      ccaccaaacc 339
                ||||||||||
Sbjct: 24814544 ccaccaaacc 24814535



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 448      gaccaaacttcacacattcctctctaacatctacctcaagttcaggaagaagggtttcat 507
                |||||| |||||  ||||| |||||||||||| ||||||| || |||||||| |||||||
Sbjct: 24813219 gaccaagcttcatgcattcttctctaacatctgcctcaagctcgggaagaagagtttcat 24813160

                 
Query: 508      c 508
                |
Sbjct: 24813159 c 24813159



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 515      caattcagcaggactgaacatattcgccaaaatcacctgagtaggaatcatcaccttctt 574
                ||||||||||||| ||||||||| |  |||||| ||   ||| | |||| ||||||||||
Sbjct: 24813002 caattcagcaggagtgaacatatgcctcaaaataactgtagttgtaatcgtcaccttctt 24812943

                               
Query: 575      atcatcatgtccacc 589
                 ||||||||||||||
Sbjct: 24812942 gtcatcatgtccacc 24812928
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
             complete sequence
          Length = 170765

 Score =  103 bits (52), Expect = 7e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                         
Query: 337   accatcttccgttcatcttctctacgcatttgagaccatctttgcggtctttgaatttta 396
             |||||||||| ||||||||||||| |||||||| ||||||||| |||||||||||||| |
Sbjct: 75974 accatcttccattcatcttctctatgcatttgataccatctttccggtctttgaatttca 75915

                                                 
Query: 397   ccaatacaactccttgtggatgattttcacaaacct 432
             |||| | ||| || | ||||||||||||||| ||||
Sbjct: 75914 ccaaaataacaccctctggatgattttcacagacct 75879



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                         
Query: 210   tgctatgtggattcttccaactcttctccaaagcgctccagccttgacacctcagcgtcg 269
             ||||||||||| ||||| |||||||||||||| || || |||||||||||||| || || 
Sbjct: 76380 tgctatgtggactcttctaactcttctccaaatcgatcaagccttgacacctctgcatca 76321

                                                                         
Query: 270   tagtcacggatgagagcgtgtttgatcgaaccgtcatcctcgctcgcgtgtatctgcctc 329
             || |||||||| ||||| || ||||| ||||||||||| || ||||| || || ||  ||
Sbjct: 76320 taatcacggatcagagcatggttgatagaaccgtcatcttcactcgcctggatttgattc 76261

                       
Query: 330   ccaccaaacc 339
             ||||||||||
Sbjct: 76260 ccaccaaacc 76251



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                         
Query: 448   gaccaaacttcacacattcctctctaacatctacctcaagttcaggaagaagggtttcat 507
             |||||| |||||  ||||| |||||||||||| ||||||| || |||||||| |||||||
Sbjct: 74935 gaccaagcttcatgcattcttctctaacatctgcctcaagctcgggaagaagagtttcat 74876

              
Query: 508   c 508
             |
Sbjct: 74875 c 74875



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                         
Query: 515   caattcagcaggactgaacatattcgccaaaatcacctgagtaggaatcatcaccttctt 574
             ||||||||||||| ||||||||| |  |||||| ||   ||| | |||| ||||||||||
Sbjct: 74718 caattcagcaggagtgaacatatgcctcaaaataactgtagttgtaatcgtcaccttctt 74659

                            
Query: 575   atcatcatgtccacc 589
              ||||||||||||||
Sbjct: 74658 gtcatcatgtccacc 74644
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>emb|AJ299246.1|NTA299246 Nicotiana tabacum partial mRNA for hypothetical protein (ORF1),
           clone 3aT7
          Length = 763

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 390 aattttaccaatacaactccttgtggatgattttcacaaacctt 433
           ||||| ||||| ||||| ||||||||||||||||| || |||||
Sbjct: 83  aatttgaccaaaacaaccccttgtggatgattttcgcacacctt 40
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 134     ttttctgttttgttcttgtataatttc 160
               |||| ||||||||||||||||||||||
Sbjct: 8969539 ttttatgttttgttcttgtataatttc 8969565
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>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0045M11
          Length = 159148

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 134    ttttctgttttgttcttgtataatttc 160
              |||| ||||||||||||||||||||||
Sbjct: 129846 ttttatgttttgttcttgtataatttc 129872
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>dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0051H02
          Length = 136520

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 134   ttttctgttttgttcttgtataatttc 160
             |||| ||||||||||||||||||||||
Sbjct: 13135 ttttatgttttgttcttgtataatttc 13161
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>gb|AC111145.7| Mus musculus chromosome 1, clone RP23-373L1, complete sequence
          Length = 165789

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 131   ctcttttctgttttgttcttgt 152
             ||||||||||||||||||||||
Sbjct: 72365 ctcttttctgttttgttcttgt 72344
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>gb|AC108424.14| Mus musculus chromosome 7, clone RP23-105A10, complete sequence
          Length = 198191

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   tcttttctgttttgttcttgt 152
             |||||||||||||||||||||
Sbjct: 33709 tcttttctgttttgttcttgt 33689
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>ref|XM_452996.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C17820g predicted mRNA
          Length = 1947

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 387  ttgaattttaccaatacaactccttgtgg 415
            ||||||||||| ||||| |||||||||||
Sbjct: 1376 ttgaattttacaaataccactccttgtgg 1404
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>gb|AC157790.10| Mus musculus chromosome 7, clone RP24-151M10, complete sequence
          Length = 167728

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 132    tcttttctgttttgttcttgt 152
              |||||||||||||||||||||
Sbjct: 127530 tcttttctgttttgttcttgt 127510
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 246     tccagccttgacacctcagcg 266
               |||||||||||||||||||||
Sbjct: 1696357 tccagccttgacacctcagcg 1696377
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 387     ttgaattttaccaatacaactccttgtgg 415
               ||||||||||| ||||| |||||||||||
Sbjct: 1587939 ttgaattttacaaataccactccttgtgg 1587967
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>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5,
             complete sequence
          Length = 165851

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   ttttctgttttgttcttgtat 154
             |||||||||||||||||||||
Sbjct: 81305 ttttctgttttgttcttgtat 81285
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>emb|AL160237.4|CNS01RH1 Human chromosome 14 DNA sequence BAC R-388E23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 206533

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    tgctcttttctgttttgttct 149
              |||||||||||||||||||||
Sbjct: 168935 tgctcttttctgttttgttct 168955
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>emb|AL135999.4|CNS01DVP Human chromosome 14 DNA sequence BAC R-66N24 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196311

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    tgctcttttctgttttgttct 149
              |||||||||||||||||||||
Sbjct: 192537 tgctcttttctgttttgttct 192517
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>emb|AL928818.8| Mouse DNA sequence from clone RP23-309M6 on chromosome 2, complete
             sequence
          Length = 69399

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   tcttttctgttttgttcttgt 152
             |||||||||||||||||||||
Sbjct: 36609 tcttttctgttttgttcttgt 36629
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>gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosome 9, complete sequence
          Length = 176237

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    cttttctgttttgttcttgt 152
              ||||||||||||||||||||
Sbjct: 124929 cttttctgttttgttcttgt 124948
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>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence
          Length = 167384

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   attttcacaaaccttgacat 438
             ||||||||||||||||||||
Sbjct: 87109 attttcacaaaccttgacat 87128
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>gb|AC123841.4| Mus musculus BAC clone RP23-400M7 from chromosome 13, complete sequence
          Length = 203062

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    catttggacaaagtttagct 49
             ||||||||||||||||||||
Sbjct: 69178 catttggacaaagtttagct 69159
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>gb|AC140915.6| Medicago truncatula clone mth2-10l24, complete sequence
          Length = 120364

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   ttgaattttaccaatacaac 406
             ||||||||||||||||||||
Sbjct: 42998 ttgaattttaccaatacaac 42979
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>emb|AL391216.10| Human DNA sequence from clone RP11-241C9 on chromosome 1 Contains the
             5' end of the ESSRG gene for estrogen-related receptor
             gamma and two CpG islands, complete sequence
          Length = 101542

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   cagctgctcttttctgtttt 144
             ||||||||||||||||||||
Sbjct: 55503 cagctgctcttttctgtttt 55522
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>emb|AL954353.14| Mouse DNA sequence from clone RP23-156D8 on chromosome 11 Contains a
              pseudogene similar to part of striatin (calmodulin binding
              protein) (Strn), complete sequence
          Length = 188920

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 321    atctgcctcccaccaaaccatctt 344
              ||||| ||||||||||||||||||
Sbjct: 164667 atctgactcccaccaaaccatctt 164690
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>gb|AC118277.5| Homo sapiens BAC clone RP11-580L23 from 4, complete sequence
          Length = 15674

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  gattcttccaactcttctcc 238
            ||||||||||||||||||||
Sbjct: 5946 gattcttccaactcttctcc 5965
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>emb|BX546460.6| Zebrafish DNA sequence from clone RP71-84C10, complete sequence
          Length = 143360

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   ctcttttctgttttgttctt 150
             ||||||||||||||||||||
Sbjct: 93704 ctcttttctgttttgttctt 93723
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>gb|AC022206.3| Homo sapiens BAC clone RP11-545E8 from 16, complete sequence
          Length = 183224

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 509   atttctcaattcagcaggactgaa 532
             |||||| |||||||||||||||||
Sbjct: 69926 atttctaaattcagcaggactgaa 69949
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>gb|AC098656.2| Homo sapiens chromosome 1 clone RP11-297I23, complete sequence
          Length = 172210

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 520    cagcaggactgaacatattc 539
              ||||||||||||||||||||
Sbjct: 147092 cagcaggactgaacatattc 147111
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>gb|AC067982.6| Homo sapiens chromosome 8, clone RP11-125E23, complete sequence
          Length = 147875

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    ctcttttctgttttgttctt 150
              ||||||||||||||||||||
Sbjct: 140748 ctcttttctgttttgttctt 140729
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>gb|AY946008.1| Homo sapiens peripheral clock protein 2 (ERIH2) mRNA, complete cds
          Length = 5526

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 aacttcacacattcctctct 472
           ||||||||||||||||||||
Sbjct: 509 aacttcacacattcctctct 490
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>gb|AY946007.1| Homo sapiens peripheral clock protein 1 (ERIH1) mRNA, complete cds
          Length = 1569

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 aacttcacacattcctctct 472
           ||||||||||||||||||||
Sbjct: 509 aacttcacacattcctctct 490
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>dbj|AB168516.1| Macaca fascicularis testis cDNA clone: QtsA-12711, similar to human
            hypothetical protein FLJ35757 (FLJ35757), mRNA, RefSeq:
            NM_152598.1
          Length = 2410

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 216  gtggattcttccaactcttctcca 239
            ||||||||||||||||| ||||||
Sbjct: 1321 gtggattcttccaactcctctcca 1344
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 87      cagtcatatagtatgaataatcgg 110
               |||||||||| |||||||||||||
Sbjct: 4869995 cagtcatataatatgaataatcgg 4869972
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>gb|AC025828.3|AC025828 Homo sapiens, clone RP11-13I24, complete sequence
          Length = 152843

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   ctcttttctgttttgttctt 150
             ||||||||||||||||||||
Sbjct: 41745 ctcttttctgttttgttctt 41726
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>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    tttgaattttaccaatacaa 405
              ||||||||||||||||||||
Sbjct: 448690 tttgaattttaccaatacaa 448671
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>gb|AC016909.9| Homo sapiens BAC clone RP11-458A7 from 2, complete sequence
          Length = 155535

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   aacttcacacattcctctct 472
             ||||||||||||||||||||
Sbjct: 60439 aacttcacacattcctctct 60458
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>gb|AC073263.5| Homo sapiens BAC clone RP11-287D1 from 2, complete sequence
          Length = 183279

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 126   agctgctcttttctgttttgttct 149
             |||| |||||||||||||||||||
Sbjct: 87462 agcttctcttttctgttttgttct 87439
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>gb|AC156288.5| Mus musculus 6 BAC RP24-246G10 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 166923

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   ctcttttctgttttgttctt 150
             ||||||||||||||||||||
Sbjct: 40384 ctcttttctgttttgttctt 40365
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>gb|AC152943.1| Mus musculus 10 BAC RP23-225G5 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 198492

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  ctcttttctgttttgttctt 150
            ||||||||||||||||||||
Sbjct: 9461 ctcttttctgttttgttctt 9480
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>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1122_A12
          Length = 149011

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    cagtcatatagtatgaataatcgg 110
             |||||||||| |||||||||||||
Sbjct: 29249 cagtcatataatatgaataatcgg 29226
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>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056D04
          Length = 158118

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    cagtcatatagtatgaataatcgg 110
             |||||||||| |||||||||||||
Sbjct: 74789 cagtcatataatatgaataatcgg 74766
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>emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 in linkage group 4,
             complete sequence
          Length = 157921

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    atgaataatcggacaaacagatga 122
             |||||||| |||||||||||||||
Sbjct: 10387 atgaataaacggacaaacagatga 10364
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>gb|AC142557.3| Cercopithecus aethiops clone CH252-402M4, complete sequence
          Length = 150854

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   tttgaattttaccaatacaa 405
             ||||||||||||||||||||
Sbjct: 63383 tttgaattttaccaatacaa 63364
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>gb|AC133935.3| Mus musculus BAC clone RP24-387M21 from 3, complete sequence
          Length = 182101

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   ttttgttcttgtataatttc 160
             ||||||||||||||||||||
Sbjct: 92237 ttttgttcttgtataatttc 92218
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>gb|AC129184.3| Mus musculus BAC clone RP23-358F24 from 5, complete sequence
          Length = 203369

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   ttcaggaagaagggtttcat 507
             ||||||||||||||||||||
Sbjct: 54480 ttcaggaagaagggtttcat 54499


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,849,675
Number of Sequences: 3902068
Number of extensions: 5849675
Number of successful extensions: 114670
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114422
Number of HSP's gapped (non-prelim): 240
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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