ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7k14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 94 2e-16
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 94 2e-16
3emb|AL731872.2|CNS08C8C Oryza sativa chromosome 12, . BAC OJ1003... 94 2e-16
4dbj|AK068145.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 1e-14
5gb|AY604046.1| Homo sapiens fibroblast growth factor 10 (FGF10) ... 40 2.6
6gb|AC144481.6| Medicago truncatula clone mth2-35e10, complete se... 40 2.6
7gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, comp... 40 2.6
8gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, comple... 40 2.6
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
10dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
11gb|AC158166.2| Mus musculus BAC clone RP23-339K21 from chromosom... 40 2.6
12gb|AC164566.3| Mus musculus BAC clone RP23-94P17 from chromosome... 40 2.6

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 123     taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 182
               ||||||||||||||||||||||| || | ||||||||||||||||| || || |||||||
Sbjct: 7550074 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 7550015

                                          
Query: 183     agccacttatgaactcgttagcagcct 209
               |  || |||||||||| ||||||||||
Sbjct: 7550014 aatcatttatgaactcattagcagcct 7549988



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 123     taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 182
               ||||||||||||||||||||||| || | ||||||||||||||||| || || |||||||
Sbjct: 7549953 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 7549894

                                          
Query: 183     agccacttatgaactcgttagcagcct 209
               |  || |||||||||| ||||||||||
Sbjct: 7549893 aatcatttatgaactcattagcagcct 7549867



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>emb|AL731872.2|CNS08C8C Oryza sativa chromosome 12, . BAC OJ1003_E07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 113215

 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 123   taccttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggca 182
             ||||||||||||||||||||||| || | ||||||||||||||||| || || |||||||
Sbjct: 38141 taccttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggca 38082

                                        
Query: 183   agccacttatgaactcgttagcagcct 209
             |  || |||||||||| ||||||||||
Sbjct: 38081 aatcatttatgaactcattagcagcct 38055



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>dbj|AK068145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134J07, full
            insert sequence
          Length = 1886

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 126  cttatttcaattcaggagcatatagtgcagggcaaggtgacacggtatgatcaggcaagc 185
            |||||||||||||||||||| || | ||||||||||||||||| || || ||||||||  
Sbjct: 1590 cttatttcaattcaggagcaaatggagcagggcaaggtgacacagtgtggtcaggcaaat 1531

                                    
Query: 186  cacttatgaactcgttagcagcct 209
            || |||||||||| ||||||||||
Sbjct: 1530 catttatgaactcattagcagcct 1507



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>gb|AY604046.1| Homo sapiens fibroblast growth factor 10 (FGF10) gene, complete cds
          Length = 87633

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    aaacaaatcaatgcacactt 56
             ||||||||||||||||||||
Sbjct: 48463 aaacaaatcaatgcacactt 48444



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>gb|AC144481.6| Medicago truncatula clone mth2-35e10, complete sequence
          Length = 127189

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aatctacatggcctgaaaaa 38
             ||||||||||||||||||||
Sbjct: 15239 aatctacatggcctgaaaaa 15258



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>gb|AC026418.4| Homo sapiens chromosome 5 clone CTD-2100N14, complete sequence
          Length = 153198

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tttcaattcaggagcatata 149
             ||||||||||||||||||||
Sbjct: 19818 tttcaattcaggagcatata 19799



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>gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, complete sequence
          Length = 169812

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     aaacaaatcaatgcacactt 56
              ||||||||||||||||||||
Sbjct: 144880 aaacaaatcaatgcacactt 144899



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 24       acatggcctgaaaaaacaaatcaa 47
                |||||||||| |||||||||||||
Sbjct: 21982537 acatggcctggaaaaacaaatcaa 21982514



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>dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0013G11
          Length = 151405

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 24    acatggcctgaaaaaacaaatcaa 47
             |||||||||| |||||||||||||
Sbjct: 74581 acatggcctggaaaaacaaatcaa 74558



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>gb|AC158166.2| Mus musculus BAC clone RP23-339K21 from chromosome 16, complete
             sequence
          Length = 194274

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     atacagattcgaatctacatggcc 31
             ||||||||||||| ||||||||||
Sbjct: 92282 atacagattcgaagctacatggcc 92259



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>gb|AC164566.3| Mus musculus BAC clone RP23-94P17 from chromosome 16, complete sequence
          Length = 203314

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 8      atacagattcgaatctacatggcc 31
              ||||||||||||| ||||||||||
Sbjct: 166416 atacagattcgaagctacatggcc 166439


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,551,145
Number of Sequences: 3902068
Number of extensions: 1551145
Number of successful extensions: 106070
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105954
Number of HSP's gapped (non-prelim): 116
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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