| Clone Name | rbaal26f19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009431.1| Triticum aestivum clone wlmk1.pk0035.e4:fis, full insert mRNA sequence Length = 1652 Score = 731 bits (369), Expect = 0.0 Identities = 430/448 (95%), Gaps = 2/448 (0%) Strand = Plus / Minus Query: 1 ttgcacttattccgatcttactcgtacccaccagaatacaaggtggggggtcatactttg 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1520 ttgcacttattccgatcttactcgtacccaccagaatacaagg-ggggggtcatactttg 1462 Query: 61 ctgttcatcgtagctggaggcagaagaagaattacagccgagattttgctactgangcgg 120 ||||||||| ||||||||||||||||||||||||||||||||||| ||||| | || | Sbjct: 1461 ctgttcatcaaagctggaggcagaagaagaattacagccgagatttcgctaccgcagcag 1402 Query: 121 gtttgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcatagg 180 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 1401 gtttgaagctcgcgatcccggtgatttctcttccggtcacaaggctgttgatgtcgtagg 1342 Query: 181 tgccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatcag 240 ||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||| Sbjct: 1341 tgccctcatatgagtaaatcggttccagatcgcagaacgcctttgctactaaaaaatcag 1282 Query: 241 ccaaaattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttgc 300 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1281 ccaaaattccattgccgcccaatagctctcggcccagagaaactacctcccttgacttgc 1222 Query: 301 tggacgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcataga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1221 tggacgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcataga 1162 Query: 361 gcttgcacaagcgccagccgacaagaagcatggccctggatgttaccaagcatccgaaca 420 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 1161 gcttgcacaagcgccagccgacaaggagcatgg-cctggatgttaccaagcatccgaaca 1103 Query: 421 agcttttcttggttgatctgaaaggctg 448 |||||||||||||||| ||||||||||| Sbjct: 1102 agcttttcttggttgagctgaaaggctg 1075
>ref|XM_475647.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1293 Score = 351 bits (177), Expect = 1e-93 Identities = 292/329 (88%), Gaps = 1/329 (0%) Strand = Plus / Minus Query: 120 ggtttgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcatag 179 ||||||||||| ||||| || ||||| |||||||||||||| | |||||||||||||||| Sbjct: 1265 ggtttgaagctggcgattccggtgatctctcttccggtcaccaagctgttgatgtcatag 1206 Query: 180 gtgccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatca 239 ||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1205 gtgccttcgtacgagaagattggctccagatcacagaacgcctttgctaccagaaagtca 1146 Query: 240 gccaaaattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttg 299 ||||||||||| || || |||| |||||| || || |||||||| |||||||| | ||| Sbjct: 1145 gccaaaattccgtttccacccagtagctcacggccaagagaaaccacctccctagccttc 1086 Query: 300 ctggacgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatag 359 |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 1085 ttggatgtccatgccttgcctaaactagcatggcctggtgtcattttgcctgattcatac 1026 Query: 360 agcttgcacaagcgccagccgacaagaagcatggccctggatgttaccaagcatccgaac 419 |||||||||| ||||||||||||||||||||||| | |||||||| || ||||| ||||| Sbjct: 1025 agcttgcacaggcgccagccgacaagaagcatgg-cttggatgtttcctagcatgcgaac 967 Query: 420 aagcttttcttggttgatctgaaaggctg 448 ||||||||||||||||| |||||| |||| Sbjct: 966 aagcttttcttggttgagctgaaaagctg 938
>dbj|AK071561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099O18, full insert sequence Length = 1568 Score = 351 bits (177), Expect = 1e-93 Identities = 292/329 (88%), Gaps = 1/329 (0%) Strand = Plus / Minus Query: 120 ggtttgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcatag 179 ||||||||||| ||||| || ||||| |||||||||||||| | |||||||||||||||| Sbjct: 1387 ggtttgaagctggcgattccggtgatctctcttccggtcaccaagctgttgatgtcatag 1328 Query: 180 gtgccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatca 239 ||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1327 gtgccttcgtacgagaagattggctccagatcacagaacgcctttgctaccagaaagtca 1268 Query: 240 gccaaaattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttg 299 ||||||||||| || || |||| |||||| || || |||||||| |||||||| | ||| Sbjct: 1267 gccaaaattccgtttccacccagtagctcacggccaagagaaaccacctccctagccttc 1208 Query: 300 ctggacgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatag 359 |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 1207 ttggatgtccatgccttgcctaaactagcatggcctggtgtcattttgcctgattcatac 1148 Query: 360 agcttgcacaagcgccagccgacaagaagcatggccctggatgttaccaagcatccgaac 419 |||||||||| ||||||||||||||||||||||| | |||||||| || ||||| ||||| Sbjct: 1147 agcttgcacaggcgccagccgacaagaagcatgg-cttggatgtttcctagcatgcgaac 1089 Query: 420 aagcttttcttggttgatctgaaaggctg 448 ||||||||||||||||| |||||| |||| Sbjct: 1088 aagcttttcttggttgagctgaaaagctg 1060
>ref|XM_550215.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1979 Score = 276 bits (139), Expect = 6e-71 Identities = 295/346 (85%), Gaps = 1/346 (0%) Strand = Plus / Minus Query: 98 ccgagattttgctactgangcgggtttgaagctcgcgatcccagtgatttctcttccggt 157 ||||| |||||||| || || ||||||||||| ||||||||||| |||||||| || || Sbjct: 1422 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 1363 Query: 158 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 217 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 1362 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 1303 Query: 218 cgcctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccag 277 |||||||| |||||||||||||||||||||||||| || ||||| | |||||||| || Sbjct: 1302 tgcctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgag 1243 Query: 278 agaaactacctcccttgacttgctggacgtccatgccttgcccaaactagcatggcctgg 337 |||||| ||||| | | | | ||||| ||||| |||| || ||||||||||| ||||| Sbjct: 1242 agaaaccacctcacgagccattctggaagtccaacccttccctaaactagcatgccctgg 1183 Query: 338 tgtcattttgcctgactcatagagcttgcacaagcgccagccgacaagaagcatggccct 397 ||||||||| ||||||||||| |||||||| | |||||||| ||||||||||| | | | Sbjct: 1182 tgtcattttccctgactcataaagcttgcatagtcgccagccaacaagaagcatcg-ctt 1124 Query: 398 ggatgttaccaagcatccgaacaagcttttcttggttgatctgaaa 443 |||||||||||||||| || ||||| ||||||||||| | |||||| Sbjct: 1123 ggatgttaccaagcattcgcacaagtttttcttggttcagctgaaa 1078
>dbj|AK100550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103E08, full insert sequence Length = 1979 Score = 276 bits (139), Expect = 6e-71 Identities = 295/346 (85%), Gaps = 1/346 (0%) Strand = Plus / Minus Query: 98 ccgagattttgctactgangcgggtttgaagctcgcgatcccagtgatttctcttccggt 157 ||||| |||||||| || || ||||||||||| ||||||||||| |||||||| || || Sbjct: 1422 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 1363 Query: 158 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 217 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 1362 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 1303 Query: 218 cgcctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccag 277 |||||||| |||||||||||||||||||||||||| || ||||| | |||||||| || Sbjct: 1302 tgcctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgag 1243 Query: 278 agaaactacctcccttgacttgctggacgtccatgccttgcccaaactagcatggcctgg 337 |||||| ||||| | | | | ||||| ||||| |||| || ||||||||||| ||||| Sbjct: 1242 agaaaccacctcacgagccattctggaagtccaacccttccctaaactagcatgccctgg 1183 Query: 338 tgtcattttgcctgactcatagagcttgcacaagcgccagccgacaagaagcatggccct 397 ||||||||| ||||||||||| |||||||| | |||||||| ||||||||||| | | | Sbjct: 1182 tgtcattttccctgactcataaagcttgcatagtcgccagccaacaagaagcatcg-ctt 1124 Query: 398 ggatgttaccaagcatccgaacaagcttttcttggttgatctgaaa 443 |||||||||||||||| || ||||| ||||||||||| | |||||| Sbjct: 1123 ggatgttaccaagcattcgcacaagtttttcttggttcagctgaaa 1078
>gb|AY107473.1| Zea mays PCO132850 mRNA sequence Length = 1709 Score = 242 bits (122), Expect = 8e-61 Identities = 276/326 (84%), Gaps = 1/326 (0%) Strand = Plus / Minus Query: 123 ttgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcataggtg 182 ||||||||||||||||| ||||| ||||| || | ||| ||||| || |||||||||||| Sbjct: 1421 ttgaagctcgcgatcccggtgatctctctgccagccaccaggctattaatgtcataggtg 1362 Query: 183 ccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatcagcc 242 |||||||| ||| |||| || |||| ||||| || ||||| || || ||||||||| || Sbjct: 1361 ccctcgtacgagaaaatgggttccacgtcacaaaatgccttggcgacaagaaaatcaacc 1302 Query: 243 aaaattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttgctg 302 ||||| |||||||| |||| ||||||||| || |||||||| |||||||| | ||| || Sbjct: 1301 aaaatgccattgccacccagtagctctcgcccaagagaaaccacctccctggccttcttg 1242 Query: 303 gacgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagc 362 |||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||| Sbjct: 1241 gacgtccatgccttacctaaactagaccggcctggtgtcattttgcctgactcatacagc 1182 Query: 363 ttgcacaagcgccagccgacaagaagcatggccctggatgttaccaagcatccgaacaag 422 ||||||| ||||| || || |||||||| | |||| ||||| |||||||| || ||||| Sbjct: 1181 ttgcacagtcgccatccaacgagaagcatag-cctgaatgttgccaagcatgcggacaag 1123 Query: 423 cttttcttggttgatctgaaaggctg 448 ||||||||| |||| |||||| |||| Sbjct: 1122 cttttcttgattgagctgaaaagctg 1097
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 174 bits (88), Expect = 2e-40 Identities = 125/136 (91%), Gaps = 1/136 (0%) Strand = Plus / Plus Query: 313 ccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagc 372 ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct: 93712 ccttgcctaaactagcatggcctggtgtcattttgcctgattcatacagcttgcacaggc 93771 Query: 373 gccagccgacaagaagcatggccctggatgttaccaagcatccgaacaagcttttcttgg 432 ||||||||||||||||||||| | |||||||| || ||||| |||||||||||||||||| Sbjct: 93772 gccagccgacaagaagcatgg-cttggatgtttcctagcatgcgaacaagcttttcttgg 93830 Query: 433 ttgatctgaaaggctg 448 |||| |||||| |||| Sbjct: 93831 ttgagctgaaaagctg 93846 Score = 117 bits (59), Expect = 3e-23 Identities = 92/103 (89%) Strand = Plus / Plus Query: 120 ggtttgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcatag 179 ||||||||||| ||||| || ||||| |||||||||||||| | |||||||||||||||| Sbjct: 92772 ggtttgaagctggcgattccggtgatctctcttccggtcaccaagctgttgatgtcatag 92831 Query: 180 gtgccctcgtatgagtaaatcggctccagatcacagaacgcct 222 ||||| ||||| ||| | || |||||||||||||||||||||| Sbjct: 92832 gtgccttcgtacgagaagattggctccagatcacagaacgcct 92874 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 220 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 279 |||||||||| ||||| |||||||||||||| || || |||| |||||| || || |||| Sbjct: 93498 cctttgctaccagaaagtcagccaaaattccgtttccacccagtagctcacggccaagag 93557 Query: 280 aaactacctcccttgacttgctggacgtccatgcct 315 |||| |||||||| | ||| |||| |||||||||| Sbjct: 93558 aaaccacctccctagccttcttggatgtccatgcct 93593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 174 bits (88), Expect = 2e-40 Identities = 125/136 (91%), Gaps = 1/136 (0%) Strand = Plus / Plus Query: 313 ccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagc 372 ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct: 3671365 ccttgcctaaactagcatggcctggtgtcattttgcctgattcatacagcttgcacaggc 3671424 Query: 373 gccagccgacaagaagcatggccctggatgttaccaagcatccgaacaagcttttcttgg 432 ||||||||||||||||||||| | |||||||| || ||||| |||||||||||||||||| Sbjct: 3671425 gccagccgacaagaagcatgg-cttggatgtttcctagcatgcgaacaagcttttcttgg 3671483 Query: 433 ttgatctgaaaggctg 448 |||| |||||| |||| Sbjct: 3671484 ttgagctgaaaagctg 3671499 Score = 117 bits (59), Expect = 3e-23 Identities = 92/103 (89%) Strand = Plus / Plus Query: 120 ggtttgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcatag 179 ||||||||||| ||||| || ||||| |||||||||||||| | |||||||||||||||| Sbjct: 3670425 ggtttgaagctggcgattccggtgatctctcttccggtcaccaagctgttgatgtcatag 3670484 Query: 180 gtgccctcgtatgagtaaatcggctccagatcacagaacgcct 222 ||||| ||||| ||| | || |||||||||||||||||||||| Sbjct: 3670485 gtgccttcgtacgagaagattggctccagatcacagaacgcct 3670527 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 220 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 279 |||||||||| ||||| |||||||||||||| || || |||| |||||| || || |||| Sbjct: 3671151 cctttgctaccagaaagtcagccaaaattccgtttccacccagtagctcacggccaagag 3671210 Query: 280 aaactacctcccttgacttgctggacgtccatgcct 315 |||| |||||||| | ||| |||| |||||||||| Sbjct: 3671211 aaaccacctccctagccttcttggatgtccatgcct 3671246
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 117 bits (59), Expect = 3e-23 Identities = 108/123 (87%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 321 aaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagcgccagccg 380 ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||||||| Sbjct: 3108089 aaactagcatgccctggtgtcattttccctgactcataaagcttgcatagtcgccagcca 3108148 Query: 381 acaagaagcatggccctggatgttaccaagcatccgaacaagcttttcttggttgatctg 440 ||||||||||| | | ||||||||||||||||| || ||||| ||||||||||| | ||| Sbjct: 3108149 acaagaagcatcg-cttggatgttaccaagcattcgcacaagtttttcttggttcagctg 3108207 Query: 441 aaa 443 ||| Sbjct: 3108208 aaa 3108210 Score = 115 bits (58), Expect = 1e-22 Identities = 108/125 (86%) Strand = Plus / Plus Query: 98 ccgagattttgctactgangcgggtttgaagctcgcgatcccagtgatttctcttccggt 157 ||||| |||||||| || || ||||||||||| ||||||||||| |||||||| || || Sbjct: 3107674 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 3107733 Query: 158 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 217 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 3107734 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 3107793 Query: 218 cgcct 222 |||| Sbjct: 3107794 tgcct 3107798 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 220 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 279 ||||||| |||||||||||||||||||||||||| || ||||| | |||||||| |||| Sbjct: 3107878 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 3107937 Query: 280 aaactacctc 289 |||| ||||| Sbjct: 3107938 aaaccacctc 3107947
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 117 bits (59), Expect = 3e-23 Identities = 108/123 (87%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 321 aaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagcgccagccg 380 ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||||||| Sbjct: 51877 aaactagcatgccctggtgtcattttccctgactcataaagcttgcatagtcgccagcca 51936 Query: 381 acaagaagcatggccctggatgttaccaagcatccgaacaagcttttcttggttgatctg 440 ||||||||||| | | ||||||||||||||||| || ||||| ||||||||||| | ||| Sbjct: 51937 acaagaagcatcg-cttggatgttaccaagcattcgcacaagtttttcttggttcagctg 51995 Query: 441 aaa 443 ||| Sbjct: 51996 aaa 51998 Score = 115 bits (58), Expect = 1e-22 Identities = 108/125 (86%) Strand = Plus / Plus Query: 98 ccgagattttgctactgangcgggtttgaagctcgcgatcccagtgatttctcttccggt 157 ||||| |||||||| || || ||||||||||| ||||||||||| |||||||| || || Sbjct: 51462 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 51521 Query: 158 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 217 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 51522 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 51581 Query: 218 cgcct 222 |||| Sbjct: 51582 tgcct 51586 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 220 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 279 ||||||| |||||||||||||||||||||||||| || ||||| | |||||||| |||| Sbjct: 51666 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 51725 Query: 280 aaactacctc 289 |||| ||||| Sbjct: 51726 aaaccacctc 51735
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 117 bits (59), Expect = 3e-23 Identities = 108/123 (87%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 321 aaactagcatggcctggtgtcattttgcctgactcatagagcttgcacaagcgccagccg 380 ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||||||| Sbjct: 76129 aaactagcatgccctggtgtcattttccctgactcataaagcttgcatagtcgccagcca 76188 Query: 381 acaagaagcatggccctggatgttaccaagcatccgaacaagcttttcttggttgatctg 440 ||||||||||| | | ||||||||||||||||| || ||||| ||||||||||| | ||| Sbjct: 76189 acaagaagcatcg-cttggatgttaccaagcattcgcacaagtttttcttggttcagctg 76247 Query: 441 aaa 443 ||| Sbjct: 76248 aaa 76250 Score = 115 bits (58), Expect = 1e-22 Identities = 108/125 (86%) Strand = Plus / Plus Query: 98 ccgagattttgctactgangcgggtttgaagctcgcgatcccagtgatttctcttccggt 157 ||||| |||||||| || || ||||||||||| ||||||||||| |||||||| || || Sbjct: 75714 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 75773 Query: 158 cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 217 ||| |||||||||||||| || ||||| ||||||||||| || |||||||| |||||||| Sbjct: 75774 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 75833 Query: 218 cgcct 222 |||| Sbjct: 75834 tgcct 75838 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 220 cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 279 ||||||| |||||||||||||||||||||||||| || ||||| | |||||||| |||| Sbjct: 75918 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 75977 Query: 280 aaactacctc 289 |||| ||||| Sbjct: 75978 aaaccacctc 75987
>gb|AY110040.1| Zea mays CL716_1 mRNA sequence Length = 1802 Score = 111 bits (56), Expect = 2e-21 Identities = 255/320 (79%), Gaps = 1/320 (0%) Strand = Plus / Minus Query: 124 tgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcataggtgc 183 |||||||||||||||| |||| || || |||||||| |||||||||||||| || |||| Sbjct: 1385 tgaagctcgcgatcccggtgacctccctgccggtcaccaggctgttgatgtcgtacgtgc 1326 Query: 184 cctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatcagcca 243 ||||||| ||||| || |||||||| || ||||||||||| ||||| || || || |||| Sbjct: 1325 cctcgtacgagtagatgggctccaggtcgcagaacgccttggctacaaggaagtcggcca 1266 Query: 244 aaattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttgctgg 303 |||| || || || |||| |||||||| || || || || ||||| | | | | |||| Sbjct: 1265 aaatcccgttcccacccagcagctctcggccaagggagaccacctcgcgggccgtcctgg 1206 Query: 304 acgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagct 363 | |||| ||||| || | ||||| ||||| || |||||||| || ||||| ||||||| Sbjct: 1205 agttccaagccttccctaggctagcgtggcccggcgtcattttccccgactcgtagagct 1146 Query: 364 tgcacaagcgccagccgacaagaagcatggccctggatgttaccaagcatccgaacaagc 423 |||| | ||||||||||| || | ||| | ||||| |||||| |||||||| | ||| Sbjct: 1145 tgcagagacgccagccgacgaggaccatcg-actggacgttaccgagcatccgggcgagc 1087 Query: 424 ttttcttggttgatctgaaa 443 || |||||||| | |||||| Sbjct: 1086 ttctcttggttcagctgaaa 1067
>gb|AY600434.1| Tropaeolum majus putative short-chain acyl-CoA oxidase mRNA, complete cds Length = 1553 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 180 gtgccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatca 239 ||||| ||||||| || || ||||||| |||||| || ||||| || |||||||||||| Sbjct: 1291 gtgccttcgtatgtatagatgggctccaaatcacaaaatgccttggcaactagaaaatca 1232 Query: 240 gccaaaattccatt 253 | ||||||||||| Sbjct: 1231 gataaaattccatt 1218
>ref|NM_115043.2| Arabidopsis thaliana ACX4 (ACYL-COA OXIDASE 4); oxidoreductase AT3G51840 (ACX4) mRNA, complete cds Length = 1759 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 210 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 253 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1354 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1311
>gb|AY125536.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds Length = 1311 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 210 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 253 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1199 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1156
>gb|AY094441.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds Length = 1718 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 210 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 253 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1354 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1311
>dbj|AK222131.1| Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase, complete cds, clone: RAFL22-95-I12 Length = 853 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 210 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 253 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 507 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 464
>gb|AY087793.1| Arabidopsis thaliana clone 3844 mRNA, complete sequence Length = 1626 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 210 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 253 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1257 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1214
>dbj|AB017643.1| Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase, complete cds Length = 1593 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 210 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 253 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1238 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1195
>gb|U72505.1|ATU72505 Arabidopsis thaliana putative acyl-coA dehydrogenase G6p (AtG6) mRNA, complete cds Length = 1579 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 210 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 253 |||||||| ||||||||||| |||||||| || | ||||||||| Sbjct: 1224 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1181
>emb|Z81042.1|CEC27H6 Caenorhabditis elegans Cosmid C27H6, complete sequence Length = 24775 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 aaaattccattgccgcccaa 262 |||||||||||||||||||| Sbjct: 13010 aaaattccattgccgcccaa 12991
>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence Length = 153028 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 cacaaggctgttgatgtcat 177 |||||||||||||||||||| Sbjct: 94000 cacaaggctgttgatgtcat 93981
>emb|AL356742.12| Human DNA sequence from clone RP11-216C10 on chromosome 20 Contains the 3' end of a novel gene, complete sequence Length = 75588 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 cctgactcatagagcttgca 367 |||||||||||||||||||| Sbjct: 51187 cctgactcatagagcttgca 51168
>emb|CR857871.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0226 (from clone DKFZp459M0226) Length = 4240 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gcctttgctactagaaaatc 238 |||||||||||||||||||| Sbjct: 2882 gcctttgctactagaaaatc 2863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,381,566 Number of Sequences: 3902068 Number of extensions: 3381566 Number of successful extensions: 53545 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53467 Number of HSP's gapped (non-prelim): 64 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)