ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal26f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 254 3e-64
2gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 254 3e-64
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 254 3e-64
4gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare str... 254 3e-64
5dbj|AK100495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
6ref|NM_111789.2| Arabidopsis thaliana protein binding AT3G09550 ... 60 8e-06
7gb|BT012564.1| Arabidopsis thaliana At3g09550 gene, complete cds 60 8e-06
8gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11... 60 8e-06
9ref|NM_190495.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
11dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
12gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence 42 1.9
13gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence 42 1.9
14gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, comp... 40 7.4
15emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080 40 7.4
16emb|AJ421825.1|SAU421825 Stigmatella aurantiaca ORF8, ORF7, ORF6... 40 7.4
17gb|AF064860.2| Homo sapiens chromosome 21 clone PAC 70I24 map 21... 40 7.4
18gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, comp... 40 7.4
19gb|AC108448.12| Homo sapiens chromosome 11, clone CTD-2544D21, c... 40 7.4
20emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-1... 40 7.4
21dbj|AK114784.1| Ciona intestinalis cDNA, clone:cieg017c10, full ... 40 7.4
22gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21... 40 7.4 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  254 bits (128), Expect = 3e-64
 Identities = 250/290 (86%), Gaps = 3/290 (1%)
 Strand = Plus / Minus

                                                                           
Query: 258     tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 314
               |||||||||||||||||||||||||||||| |||||   ||| ||||| || | ||||||
Sbjct: 9579958 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 9579899

                                                                           
Query: 315     gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 374
               ||||||||| |||| |||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 9579898 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 9579839

                                                                           
Query: 375     cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 434
                 ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || ||
Sbjct: 9579838 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 9579779

                                                                           
Query: 435     ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 494
               ||||||||||||||||||||||  |||||||   || || || || |||| ||| |||||
Sbjct: 9579778 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 9579719

                                                                 
Query: 495     gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataa 544
               ||| ||||| || ||||| || |||||||||||||||||||| |||||||
Sbjct: 9579718 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataa 9579669



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 99      acaccagcttattggaatgtatac 122
               ||||||||||||||||| ||||||
Sbjct: 9580098 acaccagcttattggaacgtatac 9580075
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>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence,
           complete sequence
          Length = 165113

 Score =  254 bits (128), Expect = 3e-64
 Identities = 250/290 (86%), Gaps = 3/290 (1%)
 Strand = Plus / Minus

                                                                       
Query: 258 tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 314
           |||||||||||||||||||||||||||||| |||||   ||| ||||| || | ||||||
Sbjct: 857 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 798

                                                                       
Query: 315 gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 374
           ||||||||| |||| |||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 797 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 738

                                                                       
Query: 375 cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 434
             ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || ||
Sbjct: 737 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 678

                                                                       
Query: 435 ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 494
           ||||||||||||||||||||||  |||||||   || || || || |||| ||| |||||
Sbjct: 677 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 618

                                                             
Query: 495 gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataa 544
           ||| ||||| || ||||| || |||||||||||||||||||| |||||||
Sbjct: 617 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataa 568



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 99  acaccagcttattggaatgtatac 122
           ||||||||||||||||| ||||||
Sbjct: 997 acaccagcttattggaacgtatac 974
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  254 bits (128), Expect = 3e-64
 Identities = 250/290 (86%), Gaps = 3/290 (1%)
 Strand = Plus / Minus

                                                                           
Query: 258     tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 314
               |||||||||||||||||||||||||||||| |||||   ||| ||||| || | ||||||
Sbjct: 9578079 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 9578020

                                                                           
Query: 315     gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 374
               ||||||||| |||| |||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 9578019 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 9577960

                                                                           
Query: 375     cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 434
                 ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || ||
Sbjct: 9577959 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 9577900

                                                                           
Query: 435     ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 494
               ||||||||||||||||||||||  |||||||   || || || || |||| ||| |||||
Sbjct: 9577899 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 9577840

                                                                 
Query: 495     gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataa 544
               ||| ||||| || ||||| || |||||||||||||||||||| |||||||
Sbjct: 9577839 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataa 9577790



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 99      acaccagcttattggaatgtatac 122
               ||||||||||||||||| ||||||
Sbjct: 9578219 acaccagcttattggaacgtatac 9578196
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>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009C19, from chromosome 3, complete sequence
          Length = 131709

 Score =  254 bits (128), Expect = 3e-64
 Identities = 250/290 (86%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                         
Query: 258   tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 314
             |||||||||||||||||||||||||||||| |||||   ||| ||||| || | ||||||
Sbjct: 32728 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 32787

                                                                         
Query: 315   gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 374
             ||||||||| |||| |||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 32788 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 32847

                                                                         
Query: 375   cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 434
               ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || ||
Sbjct: 32848 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 32907

                                                                         
Query: 435   ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 494
             ||||||||||||||||||||||  |||||||   || || || || |||| ||| |||||
Sbjct: 32908 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 32967

                                                               
Query: 495   gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataa 544
             ||| ||||| || ||||| || |||||||||||||||||||| |||||||
Sbjct: 32968 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataa 33017



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    acaccagcttattggaatgtatac 122
             ||||||||||||||||| ||||||
Sbjct: 32588 acaccagcttattggaacgtatac 32611
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>dbj|AK100495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099A04, full
            insert sequence
          Length = 2618

 Score =  254 bits (128), Expect = 3e-64
 Identities = 250/290 (86%), Gaps = 3/290 (1%)
 Strand = Plus / Minus

                                                                        
Query: 258  tcatatggcgtatatccggtctatctcggaatctga---ctccgagttgtggttccatga 314
            |||||||||||||||||||||||||||||| |||||   ||| ||||| || | ||||||
Sbjct: 2256 tcatatggcgtatatccggtctatctcggagtctgaaaactctgagttttgctgccatga 2197

                                                                        
Query: 315  gtttgagccgctccgccttgttgatttcaccttcttcctaattgaacgtgtgcgcttgga 374
            ||||||||| |||| |||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 2196 gtttgagccactcctccttgtagatttcaccttcttcctgatcgaacgtgtgcgcttgga 2137

                                                                        
Query: 375  cttcaccacatagtatgtcatcgtaccgagcacgccagccatgatcaccccaccaatgag 434
              ||||||||||||| ||||| ||||| ||||| |||||||||||||| || || || ||
Sbjct: 2136 tctcaccacatagtaggtcattgtaccaagcacaccagccatgatcactccgccgattag 2077

                                                                        
Query: 435  ggtcaccagaagcgccgcccacctgaagtgccgacccaccactatgtaagaggaggatat 494
            ||||||||||||||||||||||  |||||||   || || || || |||| ||| |||||
Sbjct: 2076 ggtcaccagaagcgccgcccactggaagtgcttcccaactacaatataagcggatgatat 2017

                                                              
Query: 495  gaatgccaccgtggtgcataccgaagccagccacatcaacttgttgataa 544
            ||| ||||| || ||||| || |||||||||||||||||||| |||||||
Sbjct: 2016 gaacgccactgtagtgcacacagaagccagccacatcaacttattgataa 1967



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 99   acaccagcttattggaatgtatac 122
            ||||||||||||||||| ||||||
Sbjct: 2396 acaccagcttattggaacgtatac 2373
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>ref|NM_111789.2| Arabidopsis thaliana protein binding AT3G09550 mRNA, complete cds
          Length = 1730

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 465  ccgacccaccactatgtaagaggaggatatgaatgccaccgtggtgcataccgaagccag 524
            |||||| ||||| ||||| || ||||| ||||||||||| |||||||| || ||||| ||
Sbjct: 1359 ccgaccaaccacaatgtacgatgaggaaatgaatgccacggtggtgcagacagaagcgag 1300

                  
Query: 525  ccacat 530
            ||||||
Sbjct: 1299 ccacat 1294
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>gb|BT012564.1| Arabidopsis thaliana At3g09550 gene, complete cds
          Length = 1311

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 465  ccgacccaccactatgtaagaggaggatatgaatgccaccgtggtgcataccgaagccag 524
            |||||| ||||| ||||| || ||||| ||||||||||| |||||||| || ||||| ||
Sbjct: 1095 ccgaccaaccacaatgtacgatgaggaaatgaatgccacggtggtgcagacagaagcgag 1036

                  
Query: 525  ccacat 530
            ||||||
Sbjct: 1035 ccacat 1030
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>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete
             sequence
          Length = 107603

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                         
Query: 465   ccgacccaccactatgtaagaggaggatatgaatgccaccgtggtgcataccgaagccag 524
             |||||| ||||| ||||| || ||||| ||||||||||| |||||||| || ||||| ||
Sbjct: 32356 ccgaccaaccacaatgtacgatgaggaaatgaatgccacggtggtgcagacagaagcgag 32297

                   
Query: 525   ccacat 530
             ||||||
Sbjct: 32296 ccacat 32291
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>ref|NM_190495.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1752

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 365  tgcgcttggacttcaccacatagtatgtcatcgtaccgagcacgccagccat 416
            ||||||| || |||||||||||||||||||| ||||| || || ||||||||
Sbjct: 1642 tgcgctttgatttcaccacatagtatgtcattgtacccagaacaccagccat 1591
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 365      tgcgcttggacttcaccacatagtatgtcatcgtaccgagcacgccagccat 416
                ||||||| || |||||||||||||||||||| ||||| || || ||||||||
Sbjct: 35878630 tgcgctttgatttcaccacatagtatgtcattgtacccagaacaccagccat 35878681
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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506B12
          Length = 170759

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                  
Query: 365    tgcgcttggacttcaccacatagtatgtcatcgtaccgagcacgccagccat 416
              ||||||| || |||||||||||||||||||| ||||| || || ||||||||
Sbjct: 143088 tgcgctttgatttcaccacatagtatgtcattgtacccagaacaccagccat 143139
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>gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence
          Length = 163065

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 159  aaagctgtttatactgagtgc 179
            |||||||||||||||||||||
Sbjct: 9909 aaagctgtttatactgagtgc 9929
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>gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence
          Length = 169462

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   aaagctgtttatactgagtgc 179
             |||||||||||||||||||||
Sbjct: 92217 aaagctgtttatactgagtgc 92237
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>gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, complete sequence
          Length = 227081

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    ggaatctgactccgagttgt 304
              ||||||||||||||||||||
Sbjct: 175618 ggaatctgactccgagttgt 175637
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>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tatacccacagcacctggag 154
             ||||||||||||||||||||
Sbjct: 76123 tatacccacagcacctggag 76142
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>emb|AJ421825.1|SAU421825 Stigmatella aurantiaca ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, ORF2, ORF1,
             stiA gene, stiB gene, stiC gene, stiD gene, stiE gene,
             stiF gene, stiG gene, stiH gene, stiJ gene, stiK gene,
             stiL gene and ORF9
          Length = 66808

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    tctgctcctggctcctgccc 90
             ||||||||||||||||||||
Sbjct: 55508 tctgctcctggctcctgccc 55489
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>gb|AF064860.2| Homo sapiens chromosome 21 clone PAC 70I24 map 21q22.3, complete
            sequence
          Length = 170121

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 135  tatacccacagcacctggag 154
            ||||||||||||||||||||
Sbjct: 2714 tatacccacagcacctggag 2733
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>gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, complete sequence
          Length = 176226

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 accccatatacccacagcac 148
           ||||||||||||||||||||
Sbjct: 466 accccatatacccacagcac 485
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>gb|AC108448.12| Homo sapiens chromosome 11, clone CTD-2544D21, complete sequence
          Length = 198599

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   accccatatacccacagcac 148
             ||||||||||||||||||||
Sbjct: 57855 accccatatacccacagcac 57836
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>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence
          Length = 188320

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    tatacccacagcacctggag 154
              ||||||||||||||||||||
Sbjct: 121185 tatacccacagcacctggag 121204
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>dbj|AK114784.1| Ciona intestinalis cDNA, clone:cieg017c10, full insert sequence
          Length = 1922

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  cacatcaacttgttgataac 545
            ||||||||||||||||||||
Sbjct: 1311 cacatcaacttgttgataac 1330
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>gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21q22.2, complete
             sequence
          Length = 132088

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tatacccacagcacctggag 154
             ||||||||||||||||||||
Sbjct: 80363 tatacccacagcacctggag 80382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,779,692
Number of Sequences: 3902068
Number of extensions: 3779692
Number of successful extensions: 60340
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60237
Number of HSP's gapped (non-prelim): 93
length of query: 549
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 526
effective length of database: 17,143,297,704
effective search space: 9017374592304
effective search space used: 9017374592304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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