>BRCA2_RAT (O35923) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3343

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 291  QSLSILTFLKLPPRSDSRPPPCTLPSGTAQPASLPPRTVGSDDDEGIMERGTSS*GGIID 470
            ++L +L+ L LPP      P CT  S  AQ A  PPR+ G+     + + G SS      
Sbjct: 3200 RALDLLSRLPLPPPLS---PVCTFVSPAAQKAFQPPRSCGTKYPTPLKKEGPSSPWSRAP 3256

Query: 471  W-LLTVPSLSDAVLMPDEECSLVMLLAAV 554
            +   +  SL D   + DEE +L+   A V
Sbjct: 3257 FQKASGVSLLDCDSVADEELALLSTQALV 3285

>BRCA2_FELCA (Q864S8) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3372

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 27/91 (29%), Positives = 40/91 (43%)
 Frame = +3

Query: 264  QNLQAEKTLQSLSILTFLKLPPRSDSRPPPCTLPSGTAQPASLPPRTVGSDDDEGIMERG 443
            + L   KT +    L FL   P      P CT  S  AQ A  PPR+ G+  +  I +R 
Sbjct: 3202 RELDDPKTCKKRKALDFLSRLPLPPPVSPICTFVSPAAQKAFQPPRSCGTKYETPIKKRE 3261

Query: 444  TSS*GGIIDWLLTVPSLSDAVLMPDEECSLV 536
             +S   +        SL ++  + DEE +L+
Sbjct: 3262 LNS-PQMTPLKFNDTSLVESDSIADEELALI 3291

>SHAN3_HUMAN (Q9BYB0) SH3 and multiple ankyrin repeat domains protein 3 (Shank3)|
           (Proline-rich synapse-associated protein 2) (ProSAP2)
           (Fragment)
          Length = 797

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = +3

Query: 327 PRSDSRPPPCTLPS-GTAQPASLPPRTVGSDDDEGIMERGT-SS*GGIIDWLLTVPSLSD 500
           P +   P P T+PS  + +P+S PP    S  D G+ E  T SS    ++   T+ ++S 
Sbjct: 388 PLAGPGPSPTTVPSPASGKPSSEPPPAPESAADSGVEEADTRSSSDPHLETTSTISTVSS 447

Query: 501 AVLMPDEECSLVMLLAAVVDDATMPLKRPGPIMLPPLFTIP 623
              +  E   L     +  D  T  L++P P+   P    P
Sbjct: 448 MSTLSSESGELTDTHTSFADGHTFLLEKP-PVPPKPKLKSP 487

>RGA2_SCHPO (Q10164) Probable Rho-type GTPase-activating protein 2|
          Length = 1275

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +3

Query: 255 PNRQNLQAEKTLQSLSILTFLKLPPRSDSRPPPCTLPSGTAQPA-----SLPPRTVGSDD 419
           P  +N +A   L   S +     P R    PPP  + S +  P      SLPPR +  D+
Sbjct: 389 PIIENKEANNFLAPTSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSLPPRGLSEDN 448

Query: 420 DEGIMERGTSS 452
           D   +++  SS
Sbjct: 449 DSLSLQKTGSS 459

>BRCA2_MOUSE (P97929) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3329

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 28/93 (30%), Positives = 37/93 (39%)
 Frame = +3

Query: 282  KTLQSLSILTFLKLPPRSDSRPPPCTLPSGTAQPASLPPRTVGSDDDEGIMERGTSS*GG 461
            KT +    L FL   P      P CT  S  AQ A  PPR+ G+     I +  +S    
Sbjct: 3186 KTCRKRRALDFLSRLPLPSPVSPICTFVSPAAQKAFQPPRSCGTKYATPIKKEPSSPRRR 3245

Query: 462  IIDWLLTVPSLSDAVLMPDEECSLVMLLAAVVD 560
                  +  SL D   + DEE +L+   A   D
Sbjct: 3246 TPFQKTSGVSLPDCDSVADEELALLSTQALTPD 3278

>BRCA2_HUMAN (P51587) Breast cancer type 2 susceptibility protein (Fanconi anemia|
            group D1 protein)
          Length = 3418

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 26/85 (30%), Positives = 40/85 (47%)
 Frame = +3

Query: 282  KTLQSLSILTFLKLPPRSDSRPPPCTLPSGTAQPASLPPRTVGSDDDEGIMERGTSS*GG 461
            K  ++L  L+ L LPP      P CT  S  AQ A  PPR+ G+  +  I ++  +S   
Sbjct: 3266 KKRRALDFLSRLPLPPPVS---PICTFVSPAAQKAFQPPRSCGTKYETPIKKKELNSPQM 3322

Query: 462  IIDWLLTVPSLSDAVLMPDEECSLV 536
                     SL ++  + DEE +L+
Sbjct: 3323 TPFKKFNEISLLESNSIADEELALI 3347

>TERM_ADEG1 (Q64752) DNA terminal protein (Bellett protein) (pTP protein)|
          Length = 575

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +1

Query: 328 RGVTVGRHHAPFPQ---EQHSLLL---CPHVR*APMMTRASWSEAQAAEEVSSIGSSLCH 489
           RG+ VGRH    PQ   E HSLL       ++   +M  AS ++A+    +  +  +LCH
Sbjct: 116 RGIDVGRHGQVLPQLDAEHHSLLSGNGAGGLQEGVLMRTASAADAELLAAIRQLRVALCH 175

Query: 490 H 492
           +
Sbjct: 176 Y 176

>SURE_HELHP (Q7VJA8) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 264

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +3

Query: 336 DSRPPPCT-LPSGTAQPASLPPRTV------GSDDDEGIMERGTSS*GGIIDWLLTVPSL 494
           D  P  C  L   T   AS  P  V      GS+  E I   GT++ G +   +  VPS+
Sbjct: 66  DGTPSDCVYLALNTLYKASCKPDLVISGINLGSNMGEDITYSGTAA-GAMEGCIQGVPSI 124

Query: 495 SDAVLMPDEECS 530
           + + LMPD+ CS
Sbjct: 125 AISQLMPDKNCS 136

>DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2030

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +3

Query: 270  LQAEKTLQSLSILTFLKLPPRSDSRPPPCTLPSGTAQPASLP-----PRTVGSDDDEGIM 434
            L    +L   ++L  +K  P      P C +P     P +LP     PR    + DEG++
Sbjct: 1933 LPVHYSLSESAVLDSIKAQPCRSHSAPGCVIPQDPMDPPALPPKPYHPRLPALEHDEGVL 1992

Query: 435  ER 440
             R
Sbjct: 1993 LR 1994

>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1|
            light chain LC2]
          Length = 2774

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +3

Query: 264  QNLQAEKTLQSLSILTFLKLPPRSDSRPPPCTLPSGTAQPASLPPR 401
            QNLQ++    S + L    +PPR +  P P   PS T  P ++PPR
Sbjct: 1990 QNLQSDTPAFSYASLAGPAVPPRQEPDPGPNVEPSIT--PPAVPPR 2033

>DOCK3_MOUSE (Q8CIQ7) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2027

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = +3

Query: 270  LQAEKTLQSLSILTFLKLPPRSDSRPPPCTLPSGTAQPASLP-----PRTVGSDDDEGIM 434
            L    +L   ++L  +K  P      P C LP     P +LP     PR    + DEG++
Sbjct: 1930 LPVHYSLSESAVLDAIKSQPCRSHSAPGCVLPQDPMDPPALPPKPYHPRLPALEHDEGML 1989

Query: 435  ER 440
             R
Sbjct: 1990 LR 1991


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,564,089
Number of Sequences: 219361
Number of extensions: 1821105
Number of successful extensions: 5484
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5464
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)