ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal25p24 |
|---|---|
| Clone Library Name | barley_pub |
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 32.3 bits (72), Expect = 0.93 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Frame = -2 Query: 398 PVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEEV 219 P T P + + S+T S T+ ++ T + A T+ST Q++ Sbjct: 261 PTTSSPAPAVSTSTSSSTPSSTTSTTTTATSV---------------AQTVSTPTTQDQT 305 Query: 218 PPAAPVLATPRLSTHPSMFTGLRLRLPTM-LPQPPRPRVTIYLPFTHFQPST 66 P +A +ATP + S+ T R P +PQP + +P + QP+T Sbjct: 306 PSSAVSVATPTV----SVSTPARTATPVQTVPQPHPQTLPPAVPHSVPQPTT 353
>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 32.0 bits (71), Expect = 1.2 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 15/130 (11%) Frame = -2 Query: 398 PVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQS------QLKLMTTAPTISTR 237 PV G+P +T G I + TL I+ +++ + Q++ T P Sbjct: 361 PVPGKPTV-------TTRTRGAIIQTPTLGPIQPTRVSDAGTVVSGQIRATVTIPGY-VE 412 Query: 236 HKQEEVPPAA----PVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ 75 PP P ++TP+ +T + + R PT P+ PR PRVT P T + Sbjct: 413 PTAVATPPTTTTKKPRVSTPKPATPSTDSSATTTRRPTKKPRTPRPVPRVTTKAPITRLE 472 Query: 74 ---PSTRSLT 54 P TR T Sbjct: 473 TASPPTRIRT 482
>DAG1_CANFA (Q9TSZ6) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 892 Score = 30.8 bits (68), Expect = 2.7 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Frame = -2 Query: 407 VYAPVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQ 228 + P G P T ++E TT G + T+ + + T PT +T+ Sbjct: 374 IQTPTLG-PIQPTRVSEAGTTVPGQIRPTMTIP-------GYVEPTAVATPPTTTTKK-- 423 Query: 227 EEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ---PSTR 63 P ++TP+ +T + + R PT P+ PR PRVT P T + P TR Sbjct: 424 -------PRVSTPKPATPSTDSSTTTTRRPTKKPRTPRPVPRVTTKAPITRLETASPPTR 476 Query: 62 SLT 54 T Sbjct: 477 IRT 479
>POLK_MOUSE (Q9QUG2) DNA polymerase kappa (EC 2.7.7.7) (DINB protein) (DINP)| Length = 852 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = -1 Query: 510 GYPAVKDEDTERVLRRLKEALDETLTLIQSCQTV--SICSRNRKAAELDGVNGKINDCIR 337 G A++ + + L++L E+ ET CQT +C R ++ L+ N +++C+ Sbjct: 588 GQQALQILEPSQALKKLSESF-ETSENSNDCQTFICPVCFREQEGVSLEAFNEHVDECLD 646 Query: 336 DLNFIRNARTNQVAAASS 283 + N++ + + ASS Sbjct: 647 GPSTSENSKISCYSHASS 664
>FTF1B_DROME (Q05192) Nuclear hormone receptor FTZ-F1 beta (dHR39)| Length = 808 Score = 30.4 bits (67), Expect = 3.5 Identities = 31/103 (30%), Positives = 41/103 (39%) Frame = -2 Query: 362 TERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEEVPPAAPVLATPRL 183 TE A I + Q Q A ++LK+ APT S + PP +P L Sbjct: 172 TELENIAGEMQIQEKCYPQSNTQHHAATKLKV---APTQSDPINLKFEPPLGD--NSPLL 226 Query: 182 STHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSLT 54 + +G L LPT P P I+ +TH PS LT Sbjct: 227 AARSKSSSGGHLPLPTN----PSPDSAIHSVYTHSSPSQSPLT 265
>Y577_TREPA (O83586) Hypothetical protein TP0577| Length = 614 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -2 Query: 218 PPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRP 111 PPA+ LA+P THP +F R +L PP P Sbjct: 77 PPASSFLASPAAPTHP-LFATARTTAAQLLSTPPAP 111
>DAG1_HUMAN (Q14118) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 30.0 bits (66), Expect = 4.6 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Frame = -2 Query: 407 VYAPVTGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQ 228 + P G P T ++E TT G + T+ + + T PT +T+ Sbjct: 377 IQTPTLG-PIQPTRVSEAGTTVPGQIRPTMTIP-------GYVEPTAVATPPTTTTKK-- 426 Query: 227 EEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPFTHFQ---PSTR 63 P ++TP+ +T + T R PT P+ PR PRVT + T + P TR Sbjct: 427 -------PRVSTPKPATPSTDSTTTTTRRPTKKPRTPRPVPRVTTKVSITRLETASPPTR 479 Query: 62 SLT 54 T Sbjct: 480 IRT 482
>CD2_HUMAN (P06729) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Erythrocyte receptor) (Rosette receptor) Length = 351 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -2 Query: 296 QQLAQSQLKLMTTAPTISTRH---KQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLP 126 Q+ ++ +L T A ++T K +++P + P P S HP G R + P+ P Sbjct: 240 QRSRRNDEELETRAHRVATEERGRKPQQIPASTP--QNPATSQHPPPPPGHRSQAPSHRP 297 Query: 125 QPPRPRV 105 PP RV Sbjct: 298 PPPGHRV 304
>DAG1_MOUSE (Q62165) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 893 Score = 30.0 bits (66), Expect = 4.6 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -2 Query: 260 TAPTISTRHKQEEVPPAAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPR--PRVTIYLPF 87 T PT +T+ P ++TP+ +T + + R PT P+ PR PRVT P Sbjct: 416 TPPTTTTKK---------PRVSTPKPATPSTDSSTTTTRRPTKKPRTPRPVPRVTTKAPI 466 Query: 86 THFQ---PSTRSLT 54 T + P TR T Sbjct: 467 TRLETASPPTRIRT 480
>CCD46_HUMAN (Q8N8E3) Coiled-coil domain-containing protein 46| Length = 955 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = -1 Query: 492 DEDTERVLRRLKEALDETLTLIQSCQTVSICSRNRKAAELDGVNGKINDCIRDLNFIRNA 313 D D +++L R ++E TL +S Q + + + K+ IRD IR Sbjct: 280 DADVQKILERKNNEIEELKTLYRSKQ-------HETEETIRKLEKKVQTLIRDCQVIRET 332 Query: 312 RTNQVAAASSVPAQT 268 + +Q+A + Q+ Sbjct: 333 KEDQIAELKKICEQS 347
>PUR1_PYRHO (O57979) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 449 Score = 30.0 bits (66), Expect = 4.6 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = -3 Query: 538 HSGQRTAQLRIPCGERR---GHGESAEEAQGGPRRNLDAHPVLPDCKY 404 H GQ A + + G+ R GHG +E +GG R L+ +PV+ +Y Sbjct: 33 HRGQEGAGISVWDGDIRTVKGHGLVSEVFKGGSIRRLNGNPVIGHVRY 80
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.6 bits (65), Expect = 6.0 Identities = 28/115 (24%), Positives = 39/115 (33%) Frame = -2 Query: 392 TGRPPN*TALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPTISTRHKQEEVPP 213 T PP T T TT + I++ T TT P+ P Sbjct: 1688 TPSPPTTTMTTPSPTTTPSSPITTTTTPS-------------STTTPSPPPTTMTTPSPT 1734 Query: 212 AAPVLATPRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSLTVC 48 P T ++T P T L T P PP + PF+ P+T + +C Sbjct: 1735 TTPSPPTTTMTTLPPTTTSSPL---TTTPLPPSITPPTFSPFSTTTPTTPCVPLC 1786
>MORC3_HUMAN (Q14149) MORC family CW-type zinc finger 3 (Zinc finger CW-type| coiled-coil domain protein 3) Length = 939 Score = 29.6 bits (65), Expect = 6.0 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = -1 Query: 495 KDEDTERVLRRLKEALDETLTLIQSCQTV-------SICSRNRKAAELDGVNGKINDCIR 337 K E + ++ + ++AL+E L + C + S CS N +E+D + +++D R Sbjct: 762 KSESPDHMVSQYQQALEEIERLKKQCSALQHVKAECSQCSNNESKSEMDEMAVQLDDVFR 821 Query: 336 DLN 328 L+ Sbjct: 822 QLD 824
>TYSY_PSEAE (Q9I6F1) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 264 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +2 Query: 284 ELAAAT*FVRAFLMKLRSLMQSLIFPLTPSNSAAFRLREHILTVWQDW 427 +LAA V L+S++ L++ L S + A+ L+EH +++W +W Sbjct: 37 DLAAGFPLVTTKKCHLKSIVHELLWFLKGSTNIAY-LKEHGVSIWDEW 83
>SORC3_HUMAN (Q9UPU3) VPS10 domain-containing receptor SorCS3 precursor| Length = 1222 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -3 Query: 505 PCGERRGHGESAEEAQGGPRRNLDAHP 425 P GERRG G A GG RR+ A P Sbjct: 110 PAGERRGRGIPAPAKLGGARRSRRAQP 136
>SPD3_MOUSE (Q6P6N5) Sprouty-related, EVH1 domain-containing protein 3| (Spred-3) Length = 408 Score = 29.3 bits (64), Expect = 7.9 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 1/105 (0%) Frame = -2 Query: 368 ALTERSTTASGTSISSETLAQIR*QQLAQSQLKLMTTAPT-ISTRHKQEEVPPAAPVLAT 192 AL+ S T S +S SS Q A++ L + + S+ H ++E PP AP+ Sbjct: 112 ALSRGSLTPSSSSSSSSPS-----QDTAETPCPLTSHVDSDSSSSHSRQETPPTAPIATV 166 Query: 191 PRLSTHPSMFTGLRLRLPTMLPQPPRPRVTIYLPFTHFQPSTRSL 57 + P + T + R + PP LPFT + SL Sbjct: 167 ESAAAFP-LATRPQRRRSSAQSYPP------LLPFTGIPEPSESL 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,954,499 Number of Sequences: 219361 Number of extensions: 1380973 Number of successful extensions: 5151 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4971 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5142 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
