ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal26e15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3586 Score = 250 bits (126), Expect = 5e-63 Identities = 267/313 (85%), Gaps = 1/313 (0%) Strand = Plus / Minus Query: 351 tctccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttc 410 ||||||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||| Sbjct: 3246 tctccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttc 3187 Query: 411 ctcagtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcnttg 470 || | |||||||| || ||||| |||||||||| ||| || || | ||| | || ||| Sbjct: 3186 cttaatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttg 3127 Query: 471 catgtttcaagtatcttctgaacaacataattagcgtactgatccttcatcattgccagc 530 ||||||||||||||||||||||| ||||| || || ||||| ||||||||||| |||||| Sbjct: 3126 catgtttcaagtatcttctgaactacatagtttgcatactggtccttcatcatcgccagc 3067 Query: 531 aaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgttctgca 590 ||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| |||| Sbjct: 3066 aagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgctctgtc 3007 Query: 591 atatctccatgttgaaaacacttctctatcacatttgatgcaaaatttattttggctcat 650 ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 3006 atatccccatgttgaaagcacttctctatcacatttgatgc-gaatttgttttgactcat 2948 Query: 651 ggtgacaacctgc 663 ||| ||||||||| Sbjct: 2947 ggtaacaacctgc 2935 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 ccctaacatagatacactgatgc 127 ||||||||||||||||||||||| Sbjct: 3451 ccctaacatagatacactgatgc 3429
>dbj|AK064999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E01, full insert sequence Length = 3586 Score = 250 bits (126), Expect = 5e-63 Identities = 267/313 (85%), Gaps = 1/313 (0%) Strand = Plus / Minus Query: 351 tctccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttc 410 ||||||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||| Sbjct: 3246 tctccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttc 3187 Query: 411 ctcagtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcnttg 470 || | |||||||| || ||||| |||||||||| ||| || || | ||| | || ||| Sbjct: 3186 cttaatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttg 3127 Query: 471 catgtttcaagtatcttctgaacaacataattagcgtactgatccttcatcattgccagc 530 ||||||||||||||||||||||| ||||| || || ||||| ||||||||||| |||||| Sbjct: 3126 catgtttcaagtatcttctgaactacatagtttgcatactggtccttcatcatcgccagc 3067 Query: 531 aaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgttctgca 590 ||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| |||| Sbjct: 3066 aagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgctctgtc 3007 Query: 591 atatctccatgttgaaaacacttctctatcacatttgatgcaaaatttattttggctcat 650 ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 3006 atatccccatgttgaaagcacttctctatcacatttgatgc-gaatttgttttgactcat 2948 Query: 651 ggtgacaacctgc 663 ||| ||||||||| Sbjct: 2947 ggtaacaacctgc 2935 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 ccctaacatagatacactgatgc 127 ||||||||||||||||||||||| Sbjct: 3451 ccctaacatagatacactgatgc 3429
>dbj|AK121539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031I02, full insert sequence Length = 3828 Score = 242 bits (122), Expect = 1e-60 Identities = 266/313 (84%), Gaps = 1/313 (0%) Strand = Plus / Minus Query: 351 tctccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttc 410 ||||||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||| Sbjct: 3372 tctccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttc 3313 Query: 411 ctcagtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcnttg 470 || | |||||||| || ||||| |||||||||| ||| || || | ||| | || ||| Sbjct: 3312 cttaatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttg 3253 Query: 471 catgtttcaagtatcttctgaacaacataattagcgtactgatccttcatcattgccagc 530 ||||||||||||||||||||||| ||||| || || ||||| ||||||||||| |||||| Sbjct: 3252 catgtttcaagtatcttctgaactacatagtttgcatactggtccttcatcatcgccagc 3193 Query: 531 aaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgttctgca 590 ||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| |||| Sbjct: 3192 aagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgctctgtc 3133 Query: 591 atatctccatgttgaaaacacttctctatcacatttgatgcaaaatttattttggctcat 650 ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| || || Sbjct: 3132 atatccccatgttgaaagcacttctctatcacatttgatgc-gaatttgttttgacttat 3074 Query: 651 ggtgacaacctgc 663 ||| ||||||||| Sbjct: 3073 ggtaacaacctgc 3061 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 ccctaacatagatacactgatgc 127 ||||||||||||||||||||||| Sbjct: 3577 ccctaacatagatacactgatgc 3555
>gb|AY105814.1| Zea mays PCO145471 mRNA sequence Length = 912 Score = 226 bits (114), Expect = 7e-56 Identities = 225/261 (86%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 403 tgtacttcctcagtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgct 462 |||||||||||| |||||||| ||| ||||| |||||||||||||| ||||||||||| | Sbjct: 912 tgtacttcctcaatgcttgcatgtggcccttgacacggctgaccaggagttcccgctggt 853 Query: 463 catcnttgcatgtttcaagtatcttctgaacaacataattagcgtactgatccttcatca 522 || ||||||||||| ||||||||||| || || ||||| || ||||| |||||||||| Sbjct: 852 tctcattgcatgtttcgagtatcttctggaccacgtaattcgcatactggtccttcatca 793 Query: 523 ttgccagcaaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctc 582 |||||||||| | || || || || || ||||||||||| | ||||| || ||||| | Sbjct: 792 ttgccagcaaattgtcattgccctctgtgtgctccacaatgtgcctgatcaggagatccc 733 Query: 583 gttctgcaatatctccatgttgaaaacacttctctatcacatttgatgcaaaatttattt 642 | || || ||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 732 gctccgccatatcaccatgttgaaaacacttctctatcacatttgatgc-aaatttattt 674 Query: 643 tggctcatggtgacaacctgc 663 ||||||||||| ||||||||| Sbjct: 673 tggctcatggtaacaacctgc 653
>gb|AY105237.1| Zea mays PCO145474 mRNA sequence Length = 1683 Score = 141 bits (71), Expect = 3e-30 Identities = 139/162 (85%) Strand = Plus / Minus Query: 366 agctgctcgacccggctcgcgatatgtttgccataggtgtacttcctcagtgcttgcaag 425 ||||||||||| ||||| |||| || ||||| || ||||||||||||| |||||||| Sbjct: 1316 agctgctcgactcggcttacgatgtgcttgccgtatgtgtacttcctcaatgcttgcata 1257 Query: 426 tgaccctttacacggctgaccagaagttcccgctgctcatcnttgcatgtttcaagtatc 485 ||| ||||||| ||||||| |||||| |||||||| || || ||||| |||||||||||| Sbjct: 1256 tgatcctttacgcggctgagcagaagctcccgctgatcctcgttgcaagtttcaagtatc 1197 Query: 486 ttctgaacaacataattagcgtactgatccttcatcattgcc 527 ||||| || || |||||||| ||||| ||||||||||||||| Sbjct: 1196 ttctggaccacgtaattagcatactggtccttcatcattgcc 1155 Score = 141 bits (71), Expect = 3e-30 Identities = 105/115 (91%), Gaps = 1/115 (0%) Strand = Plus / Minus Query: 549 gtctgctccacaatctctctgattagaagatctcgttctgcaatatctccatgttgaaaa 608 ||||||||||||||| |||||| |||||||| || || |||||||| |||||||||||| Sbjct: 857 gtctgctccacaatccgtctgatcagaagatcccgctccgcaatatcaccatgttgaaaa 798 Query: 609 cacttctctatcacatttgatgcaaaatttattttggctcatggtgacaacctgc 663 ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| Sbjct: 797 cacttctctatcacatttgatgc-atatttattttggctcatggtaacaacctgc 744
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 125 bits (63), Expect = 2e-25 Identities = 143/170 (84%) Strand = Plus / Minus Query: 354 ccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttcctc 413 |||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||||| Sbjct: 25836727 ccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttcctt 25836668 Query: 414 agtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcnttgcat 473 | |||||||| || ||||| |||||||||| ||| || || | ||| | || |||||| Sbjct: 25836667 aatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttgcat 25836608 Query: 474 gtttcaagtatcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct: 25836607 gtttcaagtatcttctgaactacatagtttgcatactggtccttcatcat 25836558 Score = 123 bits (62), Expect = 8e-25 Identities = 120/138 (86%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 526 ccagcaaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgtt 585 |||||||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| | Sbjct: 25836294 ccagcaagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgct 25836235 Query: 586 ctgcaatatctccatgttgaaaacacttctctatcacatttgatgcaaaatttattttgg 645 ||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 25836234 ctgtcatatccccatgttgaaagcacttctctatcacatttgatgc-gaatttgttttga 25836176 Query: 646 ctcatggtgacaacctgc 663 |||||||| ||||||||| Sbjct: 25836175 ctcatggtaacaacctgc 25836158 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 ccctaacatagatacactgatgc 127 ||||||||||||||||||||||| Sbjct: 25837043 ccctaacatagatacactgatgc 25837021
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 125 bits (63), Expect = 2e-25 Identities = 143/170 (84%) Strand = Plus / Minus Query: 354 ccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttcctc 413 |||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||||| Sbjct: 22514 ccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttcctt 22455 Query: 414 agtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcnttgcat 473 | |||||||| || ||||| |||||||||| ||| || || | ||| | || |||||| Sbjct: 22454 aatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttgcat 22395 Query: 474 gtttcaagtatcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct: 22394 gtttcaagtatcttctgaactacatagtttgcatactggtccttcatcat 22345 Score = 123 bits (62), Expect = 8e-25 Identities = 120/138 (86%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 526 ccagcaaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgtt 585 |||||||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| | Sbjct: 22081 ccagcaagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgct 22022 Query: 586 ctgcaatatctccatgttgaaaacacttctctatcacatttgatgcaaaatttattttgg 645 ||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 22021 ctgtcatatccccatgttgaaagcacttctctatcacatttgatgc-gaatttgttttga 21963 Query: 646 ctcatggtgacaacctgc 663 |||||||| ||||||||| Sbjct: 21962 ctcatggtaacaacctgc 21945 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 ccctaacatagatacactgatgc 127 ||||||||||||||||||||||| Sbjct: 22830 ccctaacatagatacactgatgc 22808
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 125 bits (63), Expect = 2e-25 Identities = 143/170 (84%) Strand = Plus / Minus Query: 354 ccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttcctc 413 |||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||||| Sbjct: 108938 ccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttcctt 108879 Query: 414 agtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcnttgcat 473 | |||||||| || ||||| |||||||||| ||| || || | ||| | || |||||| Sbjct: 108878 aatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttgcat 108819 Query: 474 gtttcaagtatcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct: 108818 gtttcaagtatcttctgaactacatagtttgcatactggtccttcatcat 108769 Score = 123 bits (62), Expect = 8e-25 Identities = 120/138 (86%), Gaps = 1/138 (0%) Strand = Plus / Minus Query: 526 ccagcaaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgtt 585 |||||||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| | Sbjct: 108505 ccagcaagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgct 108446 Query: 586 ctgcaatatctccatgttgaaaacacttctctatcacatttgatgcaaaatttattttgg 645 ||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct: 108445 ctgtcatatccccatgttgaaagcacttctctatcacatttgatgc-gaatttgttttga 108387 Query: 646 ctcatggtgacaacctgc 663 |||||||| ||||||||| Sbjct: 108386 ctcatggtaacaacctgc 108369 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 105 ccctaacatagatacactgatgc 127 ||||||||||||||||||||||| Sbjct: 109254 ccctaacatagatacactgatgc 109232
>gb|AF153276.1|AF153276 Populus tremula x Populus tremuloides pumilio domain-containing protein PPD1 (PPD1) mRNA, complete cds Length = 3474 Score = 54.0 bits (27), Expect = 6e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 464 atcnttgcatgtttcaagtatcttctgaacaacataattagcgtactgatccttcatcat 523 ||| |||| ||||||||||||||| || ||||||||||| || | || ||||||||||| Sbjct: 3036 atcattgcttgtttcaagtatcttttggacaacataattggcaaattggtccttcatcat 2977 Query: 524 tgccagcaag 533 | ||||||| Sbjct: 2976 tatcagcaag 2967
>ref|XM_873366.1| PREDICTED: Bos taurus similar to pumilio homolog 2, transcript variant 8 (LOC540170), mRNA Length = 5859 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 2571 atcttctgaacgacataattggcatactggtccttcatcat 2531
>ref|XM_592016.2| PREDICTED: Bos taurus similar to pumilio homolog 2, transcript variant 6 (LOC540170), mRNA Length = 4385 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 1097 atcttctgaacgacataattggcatactggtccttcatcat 1057
>ref|XM_864456.1| PREDICTED: Bos taurus similar to pumilio homolog 2, transcript variant 7 (LOC540170), mRNA Length = 6120 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 2832 atcttctgaacgacataattggcatactggtccttcatcat 2792
>gb|BC041773.1| Mus musculus pumilio 2 (Drosophila), mRNA (cDNA clone MGC:31021 IMAGE:3986207), complete cds Length = 3295 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 2809 atcttctgaaccacatagttggcatactgatccttcatcat 2769
>ref|XM_978653.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 5 (Pum2), mRNA Length = 1692 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 1345 atcttctgaaccacatagttggcatactgatccttcatcat 1305
>ref|XM_978774.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 4 (Pum2), mRNA Length = 3502 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3155 atcttctgaaccacatagttggcatactgatccttcatcat 3115
>ref|XM_978734.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 3 (Pum2), mRNA Length = 3581 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3234 atcttctgaaccacatagttggcatactgatccttcatcat 3194
>ref|XM_978894.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 7 (Pum2), mRNA Length = 3270 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 2923 atcttctgaaccacatagttggcatactgatccttcatcat 2883
>ref|XM_978808.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 8 (Pum2), mRNA Length = 3489 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3142 atcttctgaaccacatagttggcatactgatccttcatcat 3102
>ref|XM_979014.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 2 (Pum2), mRNA Length = 5905 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3072 atcttctgaaccacatagttggcatactgatccttcatcat 3032
>ref|XM_978977.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 10 (Pum2), mRNA Length = 3441 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3094 atcttctgaaccacatagttggcatactgatccttcatcat 3054
>ref|XM_978945.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 9 (Pum2), mRNA Length = 3507 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3160 atcttctgaaccacatagttggcatactgatccttcatcat 3120
>ref|XM_852972.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 6 (LOC607618), mRNA Length = 6351 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3286 atcttctgaaccacataattggcatactggtccttcatcat 3246
>ref|XM_852930.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 5 (LOC607618), mRNA Length = 6108 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3043 atcttctgaaccacataattggcatactggtccttcatcat 3003
>ref|XM_852888.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 4 (LOC607618), mRNA Length = 6330 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3265 atcttctgaaccacataattggcatactggtccttcatcat 3225
>ref|XM_852845.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 3 (LOC607618), mRNA Length = 6357 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3292 atcttctgaaccacataattggcatactggtccttcatcat 3252
>ref|XM_852804.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 2 (LOC607618), mRNA Length = 4593 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 1528 atcttctgaaccacataattggcatactggtccttcatcat 1488
>ref|XM_843995.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 1 (LOC607618), mRNA Length = 6366 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3280 atcttctgaaccacataattggcatactggtccttcatcat 3240
>gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosome 12, complete sequence Length = 170164 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 148741 atcttctgaaccacatagttggcatactgatccttcatcat 148701
>gb|BC050747.1| Mus musculus pumilio 1 (Drosophila), mRNA (cDNA clone MGC:58112 IMAGE:6593374), complete cds Length = 4037 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3476 atcttctggaccacatagttagcatactgatccttcatcat 3436
>gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosome 12, complete sequence Length = 205985 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 77617 atcttctgaaccacatagttggcatactgatccttcatcat 77577
>dbj|AB211230.2| Oncorhynchus mykiss Ompum1 mRNA for pumilio-1, partial cds Length = 3762 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 3303 atcttctgaaccacatagttggcgtactggtccttcatcat 3263
>ref|NM_030722.1| Mus musculus pumilio 1 (Drosophila) (Pum1), mRNA Length = 5029 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3482 atcttctggaccacatagttagcatactgatccttcatcat 3442
>gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193035 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 ||||||||||||||||||||||||| Sbjct: 23871 gaaaaaatatatgtatacacacaca 23847
>dbj|AK141921.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130063J01 product:pumilio 1 (Drosophila), full insert sequence Length = 5319 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3509 atcttctggaccacatagttagcatactgatccttcatcat 3469
>dbj|AK134185.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830468I10 product:pumilio 2 (Drosophila), full insert sequence Length = 4982 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3071 atcttctgaaccacatagttggcatactgatccttcatcat 3031
>dbj|AK141682.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030020M23 product:pumilio 2 (Drosophila), full insert sequence Length = 5103 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3119 atcttctgaaccacatagttggcatactgatccttcatcat 3079
>ref|NM_030723.1| Mus musculus pumilio 2 (Drosophila) (Pum2), mRNA Length = 4000 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3203 atcttctgaaccacatagttggcatactgatccttcatcat 3163
>dbj|AK147185.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920195H24 product:pumilio 1 (Drosophila), full insert sequence Length = 4586 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 2749 atcttctggaccacatagttagcatactgatccttcatcat 2709
>dbj|AK154059.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430031D14 product:pumilio 1 (Drosophila), full insert sequence Length = 3721 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3101 atcttctggaccacatagttagcatactgatccttcatcat 3061
>dbj|AK161357.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930463P09 product:pumilio 2 (Drosophila), full insert sequence Length = 2231 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 1428 atcttctgaaccacatagttggcatactgatccttcatcat 1388
>dbj|AK161135.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732465P08 product:pumilio 1 (Drosophila), full insert sequence Length = 4535 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3215 atcttctggaccacatagttagcatactgatccttcatcat 3175
>dbj|AK147617.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1092I08 product:pumilio 2 (Drosophila), full insert sequence Length = 6220 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3205 atcttctgaaccacatagttggcatactgatccttcatcat 3165
>dbj|AK163977.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330024P05 product:pumilio 1 (Drosophila), full insert sequence Length = 4120 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3500 atcttctggaccacatagttagcatactgatccttcatcat 3460
>dbj|AK163964.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330013P12 product:pumilio 2 (Drosophila), full insert sequence Length = 3588 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 2810 atcttctgaaccacatagttggcatactgatccttcatcat 2770
>dbj|AK162742.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130009G24 product:pumilio 1 (Drosophila), full insert sequence Length = 4478 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3199 atcttctggaccacatagttagcatactgatccttcatcat 3159
>gb|BC013765.1| Mus musculus pumilio 2 (Drosophila), mRNA (cDNA clone IMAGE:3595161), partial cds Length = 3477 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 438 atcttctgaaccacatagttggcatactgatccttcatcat 398
>dbj|AK048119.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130035P13 product:pumilio 2 (Drosophila), full insert sequence Length = 2886 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 2126 atcttctgaaccacatagttggcatactgatccttcatcat 2086
>gb|AY027917.1| Mus musculus PUM1 (Pum1) mRNA, complete cds Length = 3569 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3103 atcttctgaaccacatagttggcatactgatccttcatcat 3063
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 468 ttgcatgtttcaagtatcttctgaacaacataattagcgtactgatccttcat 520 ||||||||| ||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 18929866 ttgcatgttgtaagcatcttctgtaccacataattagcatactggtccttcat 18929918 Score = 48.1 bits (24), Expect = 0.037 Identities = 49/56 (87%), Gaps = 1/56 (1%) Strand = Plus / Plus Query: 597 ccatgttgaaaacacttctctatcacatttgatgcaaaatttattttggctcatgg 652 ||||||| ||||||| ||||||| ||||| || ||||| ||| ||||||||||||| Sbjct: 18930374 ccatgttcaaaacacctctctatgacattagacgcaaa-tttgttttggctcatgg 18930428
>ref|NM_001039292.1| Gallus gallus pumilio 2 (PUM2), mRNA Length = 3329 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 3029 atcttctgaacaacatagttggcatactggtccttcatcat 2989
>ref|XM_342928.2| PREDICTED: Rattus norvegicus pumilio 1 (Drosophila) (predicted) (Pum1_predicted), mRNA Length = 4164 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || |||||||| || ||||||||||||||||| Sbjct: 3638 atcttctggaccacataattggcatactgatccttcatcat 3598
>gb|AF315590.1| Mus musculus Pumilio 2 (Pumm2) mRNA, complete cds Length = 4000 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3203 atcttctgaaccacatagttggcatactgatccttcatcat 3163
>gb|AF321909.1| Mus musculus pumilio 1 (Pumm1) mRNA, complete cds Length = 5029 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3482 atcttctggaccacatagttagcatactgatccttcatcat 3442
>dbj|AK070870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075A04, full insert sequence Length = 3589 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 468 ttgcatgtttcaagtatcttctgaacaacataattagcgtactgatccttcat 520 ||||||||| ||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 3062 ttgcatgttgtaagcatcttctgtaccacataattagcatactggtccttcat 3010 Score = 48.1 bits (24), Expect = 0.037 Identities = 49/56 (87%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 597 ccatgttgaaaacacttctctatcacatttgatgcaaaatttattttggctcatgg 652 ||||||| ||||||| ||||||| ||||| || ||||| ||| ||||||||||||| Sbjct: 2933 ccatgttcaaaacacctctctatgacattagacgcaaa-tttgttttggctcatgg 2879
>gb|BC048174.1| Mus musculus pumilio 1 (Drosophila), mRNA (cDNA clone MGC:61243 IMAGE:6825203), complete cds Length = 4002 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3462 atcttctggaccacatagttagcatactgatccttcatcat 3422
>dbj|AK122225.1| Mus musculus mRNA for mKIAA0235 protein Length = 3570 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3105 atcttctgaaccacatagttggcatactgatccttcatcat 3065
>dbj|AK122205.1| Mus musculus mRNA for mKIAA0099 protein Length = 5329 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3492 atcttctggaccacatagttagcatactgatccttcatcat 3452
>gb|DQ275192.1| Gallus gallus pumilio 2 (pum2) mRNA, complete cds Length = 3329 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 3029 atcttctgaacaacatagttggcatactggtccttcatcat 2989
>emb|AL627104.16| Mouse DNA sequence from clone RP23-412B2 on chromosome 4, complete sequence Length = 193363 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 23840 atcttctggaccacatagttagcatactgatccttcatcat 23800
>gb|U84721.1|HSU84721 Homo sapiens interferon gamma receptor 1 gene, microsatellite sequence Length = 288 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||||||||||||||||||||||| Sbjct: 147 aaaaaatatatgtatacacacaca 124
>gb|AY594694.1| Homo sapiens interferon gamma receptor 1 (IFNGR1) gene, complete cds Length = 34003 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||||||||||||||||||||||| Sbjct: 18784 aaaaaatatatgtatacacacaca 18761
>emb|AL356133.17| Human DNA sequence from clone RP11-337A23 on chromosome 9 Contains a novel gene (FLJ13657), the PLAA gene for phospholipase A2-activating protein (PLAP), a novel gene, the 5' end of capillary morphogenesis protein 1 (CMG-1, FLJ22621)(CMG1) and 3 CpG islands, complete sequence Length = 187805 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||||||||||||||||||||||| Sbjct: 74100 aaaaaatatatgtatacacacaca 74077
>emb|AL050337.6|HSJ503F13 Human DNA sequence from clone RP3-503F13 on chromosome 6q24.1-25.2 Contains the IFNGR1 gene for interferon gamma receptor 1, the gene for class II cytokine receptor (IL22RA2) (interleukin 22-binding protein, IL22BP) and a putative CpG island, complete sequence Length = 113811 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 |||||||||||||||||||||||| Sbjct: 64198 aaaaaatatatgtatacacacaca 64221
>gb|AC157503.3| Medicago truncatula chromosome 2 BAC clone mte1-58k20, complete sequence Length = 115769 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 492 acaacataattagcgtactgatccttcatcattgcc 527 |||||||||||||| ||||||| |||||||||||| Sbjct: 46284 acaacataattagcaaactgatctttcatcattgcc 46249
>gb|AC092178.4| Homo sapiens BAC clone RP11-627I23 from 2, complete sequence Length = 166299 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||||||||||||||||||||||| Sbjct: 23579 aaaaaatatatgtatacacacaca 23556
>gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complete sequence Length = 163085 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||||||||||||||||||||||| Sbjct: 9866 aaaaaatatatgtatacacacaca 9843
>emb|AL670462.8| Mouse DNA sequence from clone RP23-225F2 on chromosome X, complete sequence Length = 199841 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||||||||||||||||||||||| Sbjct: 128993 aaaaaatatatgtatacacacaca 128970
>gb|U21319.2| Caenorhabditis elegans cosmid C30G12, complete sequence Length = 41369 Score = 46.1 bits (23), Expect = 0.15 Identities = 35/39 (89%) Strand = Plus / Plus Query: 486 ttctgaacaacataattagcgtactgatccttcatcatt 524 ||||||||||| || || ||||||||||| ||||||||| Sbjct: 36186 ttctgaacaacgtagttggcgtactgatctttcatcatt 36224
>gb|AY811134.1| Schistosoma japonicum SJCHGC07942 protein mRNA, partial cds Length = 561 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 489 tgaacaacataattagcgtactgatccttcatcat 523 |||||||||||||| || |||||||| |||||||| Sbjct: 453 tgaacaacataatttgcatactgatctttcatcat 419
>gb|AC013470.10| Homo sapiens BAC clone RP11-472F21 from 7, complete sequence Length = 170723 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 12 aaaaatatatgtatacacacaca 34 ||||||||||||||||||||||| Sbjct: 43506 aaaaatatatgtatacacacaca 43528
>emb|BX649451.4| Zebrafish DNA sequence from clone DKEY-206M7 in linkage group 10, complete sequence Length = 97299 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 10 gaaaaaatatatgtatacacaca 32 ||||||||||||||||||||||| Sbjct: 39627 gaaaaaatatatgtatacacaca 39649
>gb|AC096971.2| Homo sapiens chromosome 3 clone RP11-430J3, complete sequence Length = 163863 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 aaaaatatatgtatacacacaca 34 ||||||||||||||||||||||| Sbjct: 63421 aaaaatatatgtatacacacaca 63399
>ref|XM_692975.1| PREDICTED: Danio rerio similar to pumilio 2 (LOC569578), mRNA Length = 1750 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 489 tgaacaacataattagcgtactgatccttcatcat 523 |||||||||||||| || ||||| ||||||||||| Sbjct: 461 tgaacaacataatttgcatactggtccttcatcat 427
>ref|NM_063122.4| Caenorhabditis elegans PUF (Pumilio/FBF) domain-containing family member (puf-8) (puf-8) mRNA, complete cds Length = 1777 Score = 46.1 bits (23), Expect = 0.15 Identities = 35/39 (89%) Strand = Plus / Minus Query: 486 ttctgaacaacataattagcgtactgatccttcatcatt 524 ||||||||||| || || ||||||||||| ||||||||| Sbjct: 1448 ttctgaacaacgtagttggcgtactgatctttcatcatt 1410
>gb|AC005541.1|AC005541 Homo sapiens BAC clone CTB-44L22 from 7, complete sequence Length = 110626 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 12 aaaaatatatgtatacacacaca 34 ||||||||||||||||||||||| Sbjct: 15820 aaaaatatatgtatacacacaca 15842
>gb|AC007619.23| Homo sapiens 12 BAC RP11-253I19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172206 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 aaaaatatatgtatacacacaca 34 ||||||||||||||||||||||| Sbjct: 8140 aaaaatatatgtatacacacaca 8118
>gb|AC004061.1|AC004061 Homo sapiens chromosome 4 clone B299F15 map 4q21, complete sequence Length = 117101 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 10 gaaaaaatatatgtatacacaca 32 ||||||||||||||||||||||| Sbjct: 29233 gaaaaaatatatgtatacacaca 29255
>gb|BC080379.1| Xenopus laevis pumilio 1, mRNA (cDNA clone MGC:81634 IMAGE:6864120), complete cds Length = 4609 Score = 44.1 bits (22), Expect = 0.58 Identities = 34/38 (89%) Strand = Plus / Minus Query: 486 ttctgaacaacataattagcgtactgatccttcatcat 523 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 3466 ttctgtacaacatagttagcatactggtccttcatcat 3429
>gb|AC136915.14| Mus musculus chromosome 16, clone RP23-65O24, complete sequence Length = 140233 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 aaaatatatgtatacacacaca 34 |||||||||||||||||||||| Sbjct: 102367 aaaatatatgtatacacacaca 102388
>gb|AC126253.3| Mus musculus BAC clone RP24-119M15 from chromosome 14, complete sequence Length = 172035 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 13 aaaatatatgtatacacacaca 34 |||||||||||||||||||||| Sbjct: 29270 aaaatatatgtatacacacaca 29249
>emb|CR854838.13| Zebrafish DNA sequence from clone CH211-130H14 in linkage group 13, complete sequence Length = 154065 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 623 atttgatgcaaaatttattttg 644 |||||||||||||||||||||| Sbjct: 40970 atttgatgcaaaatttattttg 40949
>emb|AL590064.9| Human DNA sequence from clone RP11-471M10 on chromosome 13 Contains part of a novel gene similar to TPTE and PTEN homologous inositol lipid phosphatase (TPIP), a TPIP pseudogene and a cytochrome C (HCS) pseudogene, complete sequence Length = 73766 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 aaaatttattttggctcatggt 653 |||||||||||||||||||||| Sbjct: 57874 aaaatttattttggctcatggt 57853
>emb|AL355343.18| Human DNA sequence from clone RP11-455I14 on chromosome 6 Contains the 5' end of the TIAM2 gene for T-cell lymphoma invasion and metastasis 2 (SIF and Tiam 1-like exchange factor (STEF)), complete sequence Length = 179262 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 13 aaaatatatgtatacacacaca 34 |||||||||||||||||||||| Sbjct: 48495 aaaatatatgtatacacacaca 48474
>emb|AL078603.4|HSJ364H10 Human DNA sequence from clone RP3-364H10 on chromosome 6q16.1-16.3, complete sequence Length = 150355 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 aaaatttattttggctcatggt 653 |||||||||||||||||||||| Sbjct: 75865 aaaatttattttggctcatggt 75844
>emb|BX072580.4| Mouse DNA sequence from clone RP23-221P8 on chromosome 4, complete sequence Length = 15001 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 aaaatttattttggctcatggt 653 |||||||||||||||||||||| Sbjct: 4435 aaaatttattttggctcatggt 4414
>emb|BX927201.9| Zebrafish DNA sequence from clone DKEY-12D17 in linkage group 5, complete sequence Length = 101099 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacacaag 36 ||||||||||| |||||||||||||| Sbjct: 73391 aaaaaatatatatatacacacacaag 73416
>emb|BX511144.13| Zebrafish DNA sequence from clone CH211-39L20 in linkage group 12, complete sequence Length = 185993 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacacaa 35 |||||||||||||||||||||| Sbjct: 33694 aaatatatgtatacacacacaa 33715
>ref|NM_001038755.1| Drosophila melanogaster CG14408-RC, transcript variant C (CG14408), mRNA Length = 3140 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 tttcgaaaaaatatatgtatac 27 |||||||||||||||||||||| Sbjct: 2902 tttcgaaaaaatatatgtatac 2923
>gb|AC092544.4| Homo sapiens BAC clone RP11-317F4 from 4, complete sequence Length = 159263 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacacaa 35 |||||||||||||||||||||| Sbjct: 44073 aaatatatgtatacacacacaa 44094
>gb|AY060745.1| Drosophila melanogaster GH19670 full length cDNA Length = 3145 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 tttcgaaaaaatatatgtatac 27 |||||||||||||||||||||| Sbjct: 2902 tttcgaaaaaatatatgtatac 2923
>gb|AY052558.1| Xenopus laevis pumilio-like protein 1 (pum1) mRNA, partial cds Length = 2854 Score = 44.1 bits (22), Expect = 0.58 Identities = 34/38 (89%) Strand = Plus / Minus Query: 486 ttctgaacaacataattagcgtactgatccttcatcat 523 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 1899 ttctgtacaacatagttagcatactggtccttcatcat 1862
>dbj|AK035362.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530024B22 product:unclassifiable, full insert sequence Length = 1857 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 632 aaaatttattttggctcatggt 653 |||||||||||||||||||||| Sbjct: 1848 aaaatttattttggctcatggt 1827
>gb|AC022344.2|AC022344 Drosophila melanogaster, chromosome X, region 12F-13A, BAC clone BACR30H22, complete sequence Length = 157308 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 tttcgaaaaaatatatgtatac 27 |||||||||||||||||||||| Sbjct: 51464 tttcgaaaaaatatatgtatac 51443
>gb|AC105250.3| Homo sapiens BAC clone RP11-39C10 from 4, complete sequence Length = 70449 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 atatatgtatacacacacaagc 37 |||||||||||||||||||||| Sbjct: 52231 atatatgtatacacacacaagc 52252
>gb|AC154285.2| Mus musculus BAC clone RP23-452P8 from chromosome 16, complete sequence Length = 183796 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 aaaatatatgtatacacacaca 34 |||||||||||||||||||||| Sbjct: 2677 aaaatatatgtatacacacaca 2698
>dbj|AB091091.1| Xenopus laevis mRNA for Pumilio, complete cds Length = 4932 Score = 44.1 bits (22), Expect = 0.58 Identities = 34/38 (89%) Strand = Plus / Minus Query: 486 ttctgaacaacataattagcgtactgatccttcatcat 523 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 3806 ttctgtacaacatagttagcatactggtccttcatcat 3769
>emb|AL160192.3|CNS01RGU Human chromosome 14 DNA sequence BAC R-226P1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 185228 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacaca 32 |||||||||||||||||||||| Sbjct: 42916 aaaaaatatatgtatacacaca 42937
>gb|AE003497.3| Drosophila melanogaster chromosome X, section 49 of 74 of the complete sequence Length = 275651 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 tttcgaaaaaatatatgtatac 27 |||||||||||||||||||||| Sbjct: 41133 tttcgaaaaaatatatgtatac 41112
>dbj|AB045628.1| Xenopus laevis mRNA for pumilio, partial cds Length = 2000 Score = 44.1 bits (22), Expect = 0.58 Identities = 34/38 (89%) Strand = Plus / Minus Query: 486 ttctgaacaacataattagcgtactgatccttcatcat 523 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 1551 ttctgtacaacatagttagcgtactggtctttcatcat 1514
>ref|XM_630936.1| Dictyostelium discoideum hypothetical protein (DDB0219491), partial mRNA Length = 4173 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 623 atttgatgcaaaatttatttt 643 ||||||||||||||||||||| Sbjct: 1098 atttgatgcaaaatttatttt 1078
>gb|AY724506.1| Rattus norvegicus clone UI-R-FJ0-cpx-i-08-0-UI unknown mRNA Length = 3182 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || || |||||||||||||| Sbjct: 2705 atcttctgaaccacatagttggcatattgatccttcatcat 2665
>gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, complete sequence Length = 159888 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 gaaaaaatatatgtatacacacaca 34 ||||| ||||||||||||||||||| Sbjct: 127476 gaaaatatatatgtatacacacaca 127500
>gb|AC166339.4| Mus musculus chromosome 8, clone RP23-274G17, complete sequence Length = 184383 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 107823 aaatatatgtatacacacaca 107803
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 6 tttcgaaaaaatatatgtatacacacaca 34 |||||||||||||| ||||||||||||| Sbjct: 107150 tttcgaaaaaatattagtatacacacaca 107178
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 6 tttcgaaaaaatatatgtatacacacaca 34 |||||||||||||| ||||||||||||| Sbjct: 163578 tttcgaaaaaatattagtatacacacaca 163606
>gb|AC158305.4| Mus musculus chromosome 1, clone RP23-131K23, complete sequence Length = 199641 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 ||||| ||||||||||||||||||| Sbjct: 8579 gaaaatatatatgtatacacacaca 8555
>gb|AC111125.11| Mus musculus chromosome 9, clone RP23-331P8, complete sequence Length = 260036 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 73412 aaatatatgtatacacacaca 73392
>gb|AC137525.3| Mus musculus BAC clone RP23-68H24 from chromosome 3, complete sequence Length = 203159 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 128505 gaaaaaatatatatatacacacaca 128481
>gb|AC131341.3| Mus musculus BAC clone RP24-263O10 from chromosome 17, complete sequence Length = 152220 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 85472 aaatatatgtatacacacaca 85492
>gb|AC125325.4| Mus musculus BAC clone RP23-296K22 from chromosome 9, complete sequence Length = 156124 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 34186 gaaaaaatatatatatacacacaca 34162
>ref|XM_749097.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g14360) partial mRNA Length = 192 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 586 ctgcaatatctccatgttgaa 606 ||||||||||||||||||||| Sbjct: 186 ctgcaatatctccatgttgaa 166
>gb|AC124458.5| Mus musculus BAC clone RP24-136E11 from chromosome 12, complete sequence Length = 168181 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 104702 gaaaaaatatatatatacacacaca 104678
>gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome 9, complete sequence Length = 176504 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 39022 aaatatatgtatacacacaca 39002
>gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosome 15, complete sequence Length = 229480 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 75892 aaatatatgtatacacacaca 75872
>gb|AC093516.5| Homo sapiens chromosome 16 clone CTD-2537L13, complete sequence Length = 186814 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 25899 aaatatatgtatacacacaca 25879
>gb|AC116051.4| Mus musculus BAC clone RP23-4L11 from 3, complete sequence Length = 224674 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 38152 gaaaaaatatatatatacacacaca 38128
>emb|CR407547.14| Zebrafish DNA sequence from clone DKEY-62A12 in linkage group 9, complete sequence Length = 204067 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 25367 gaaaaaatatatatatacacacaca 25343
>gb|AC006000.3| Homo sapiens PAC clone RP4-741M6 from 7, complete sequence Length = 124170 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 82527 aaatatatgtatacacacaca 82547
>gb|AC148448.3| Pan troglodytes chromosome X clone PTB-007I07 map human ortholog q22.1, complete sequence Length = 44375 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 34357 gaaaaaatatatatatacacacaca 34381
>gb|AC142327.1| Pan troglodytes BAC clone RP43-22L22 from 7, complete sequence Length = 176446 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 152444 gaaaaaatatatatatacacacaca 152420
>gb|AC152551.33| Medicago truncatula clone mth2-24d6, complete sequence Length = 115154 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 aaaaatatatgtatacacacacaag 36 ||||| ||||||||||||||||||| Sbjct: 16426 aaaaacatatgtatacacacacaag 16402
>emb|AL163249.2|HS21C049 Homo sapiens chromosome 21 segment HS21C049 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 308835 aaatatatgtatacacacaca 308815
>emb|AL034428.4|HS705D16 Human DNA sequence from clone RP4-705D16 on chromosome 20p11.22-12.2 Contains the SNRPB2 gene for small nuclear ribonucleoprotein polypeptide B'', the OTOR gene for otoraplin, a novel gene and a CpG island, complete sequence Length = 121151 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacacaa 35 ||||||||||| ||||||||||||| Sbjct: 19375 aaaaaatatatatatacacacacaa 19351
>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence Length = 249943 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 aaaaatatatgtatacacaca 32 ||||||||||||||||||||| Sbjct: 110520 aaaaatatatgtatacacaca 110500
>emb|AL356313.15| Human DNA sequence from clone RP11-531P20 on chromosome 13 Contains a novel gene, complete sequence Length = 143957 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 aaatttattttggctcatggt 653 ||||||||||||||||||||| Sbjct: 46869 aaatttattttggctcatggt 46849
>emb|AL356094.11| Human DNA sequence from clone RP11-64I5 on chromosome 6, complete sequence Length = 157588 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 129065 aaatatatgtatacacacaca 129085
>emb|AL161442.22| Human DNA sequence from clone RP6-102F8 on chromosome Xq25-26.3 Contains the 5' end of variants of the MBNL3 gene for muscleblind-like 3 (Drosophila) and a CpG island, complete sequence Length = 112453 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 633 aaatttattttggctcatggt 653 ||||||||||||||||||||| Sbjct: 15985 aaatttattttggctcatggt 16005
>gb|AF457595.1| Pyrus communis cultivar Coscia di Firenze S-RNase (S) gene, Sb allele, exons 1 and 2 and partial cds Length = 783 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 aaaaatatatgtatacacacacaag 36 |||||||||| |||||||||||||| Sbjct: 227 aaaaatatatatatacacacacaag 203
>emb|AL136962.19| Human DNA sequence from clone RP11-273F15 on chromosome 13 Contains a pseudogene similar to part of NADH dehydrogenase 3 (NADH dehydrogenase, subunit 3 (complex I)) (MTND3) and a non-metastatic cells 1, protein (NM23A) expressed in (NME1)(NM23, NM23-H1) pseudogene, complete sequence Length = 165655 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 aaaaatatatgtatacacaca 32 ||||||||||||||||||||| Sbjct: 157085 aaaaatatatgtatacacaca 157105
>gb|AC044849.12| Homo sapiens chromosome 8, clone RP11-489E7, complete sequence Length = 149301 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 35622 gaaaaaatatatatatacacacaca 35598
>emb|AL136159.11| Human DNA sequence from clone RP11-165M6 on chromosome 13 Contains a novel gene and a ribosomal protein L35 (RPL35) pseudogene, complete sequence Length = 74012 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 atatatgtatacacacacaag 36 ||||||||||||||||||||| Sbjct: 7851 atatatgtatacacacacaag 7831
>emb|AL121583.25|HSBA358N2 Human DNA sequence from clone RP11-358N2 on chromosome 20 Contains the 5' end of the ASXL1 gene for additional sex combs like 1 (Drosophila) and a CpG island, complete sequence Length = 84710 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 56748 aaatatatgtatacacacaca 56768
>emb|AL031667.21|HS620E11 Human DNA sequence from clone RP4-620E11 on chromosome 20q11.2-12 Contains the 3' end of the LPIN3 gene for lipin 3, the C20orf130 gene, a novel pseudogene, the 3' end of the CHD6 gene for chromodomain helicase DNA binding protein 6, a lymphocyte antigen 6 complex locus H (LY6H) pseudogene and a CpG island, complete sequence Length = 142520 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 52317 aaatatatgtatacacacaca 52297
>emb|AL035422.12|HS164F3 Human DNA sequence from clone RP1-164F3 on chromosome Xq21.33-23 Contains a ribosomal protein L21 (RPL21) pseudogene, the TIMM8A gene for translocase of inner mitochondrial membrane 8 homolog A (yeast), the BTK gene for Bruton agammaglobulinemia tyrosine kinase, the RPL36A gene for ribosomal protein L36a, the GLA gene for alpha galactosidase, the HNRPH2 gene for heterogeneous nuclear ribonucleoprotein H2 (H'), the gene for a novel protein, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene and two CpG islands, complete sequence Length = 136693 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 22335 gaaaaaatatatatatacacacaca 22359
>emb|AL031596.7|HS745C22 Human DNA sequence from clone RP4-745C22 on chromosome 22q11.22-12.3, complete sequence Length = 13949 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 4381 aaatatatgtatacacacaca 4361
>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5' end of the Car10 gene for carbonic anhydrase 10 and one CpG island, complete sequence Length = 203449 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 aaaatttattttggctcatgg 652 ||||||||||||||||||||| Sbjct: 60795 aaaatttattttggctcatgg 60775
>emb|AL669823.7| Mouse DNA sequence from clone RP23-456O1 on chromosome 11 Contains a novel gene and the 5' end of a novel gene, complete sequence Length = 197012 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 179702 aaatatatgtatacacacaca 179722
>emb|BX664751.9| Zebrafish DNA sequence from clone CH211-61F14 in linkage group 2, complete sequence Length = 106773 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacacaa 35 ||||||||||| ||||||||||||| Sbjct: 60157 aaaaaatatatatatacacacacaa 60133
>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence Length = 150750 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 86183 aaatatatgtatacacacaca 86163
>dbj|AB236429.1| Pyrus communis Sb-RNase gene for Sb-RNase, complete cds Length = 1066 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 aaaaatatatgtatacacacacaag 36 |||||||||| |||||||||||||| Sbjct: 362 aaaaatatatatatacacacacaag 338
>emb|CR380839.1|PTB083D21 Pan troglodytes chromosome X BAC PTB-083D21, complete sequence Length = 186291 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 41661 gaaaaaatatatatatacacacaca 41637
>gb|AC157537.16| Medicago truncatula clone mth2-124a3, complete sequence Length = 112188 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 aaaaatatatgtatacacacacaag 36 ||||| ||||||||||||||||||| Sbjct: 23596 aaaaacatatgtatacacacacaag 23620
>gb|AC113406.2| Homo sapiens chromosome 5 clone RP11-471O19, complete sequence Length = 147183 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 atatatgtatacacacacaag 36 ||||||||||||||||||||| Sbjct: 44276 atatatgtatacacacacaag 44296
>gb|AC114964.2| Homo sapiens chromosome 5 clone RP11-275B7, complete sequence Length = 171025 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 atatatgtatacacacacaag 36 ||||||||||||||||||||| Sbjct: 128806 atatatgtatacacacacaag 128826
>gb|AC083934.3| Homo sapiens chromosome 8, clone RP11-108L23, complete sequence Length = 157749 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 33312 aaatatatgtatacacacaca 33292
>gb|AC106787.2| Homo sapiens chromosome 5 clone RP11-365I6, complete sequence Length = 129667 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 85274 aaatatatgtatacacacaca 85294
>dbj|AK157124.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830203G20 product:unclassifiable, full insert sequence Length = 2538 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 1225 aaatatatgtatacacacaca 1245
>gb|AC023095.8| Homo sapiens chromosome 8, clone RP11-26L21, complete sequence Length = 157178 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 41092 aaatatatgtatacacacaca 41112
>gb|AC091165.15| Homo sapiens chromosome 8, clone RP11-366G13, complete sequence Length = 188456 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 28097 gaaaaaatatatatatacacacaca 28121
>emb|BX470141.4| Zebrafish DNA sequence from clone DKEY-110M20 in linkage group 12, complete sequence Length = 84274 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 20265 aaatatatgtatacacacaca 20245
>gb|AC020982.6| Homo sapiens chromosome 5 clone RP1-255M24, complete sequence Length = 137703 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 atatatgtatacacacacaag 36 ||||||||||||||||||||| Sbjct: 110789 atatatgtatacacacacaag 110769
>gb|AC026406.5| Homo sapiens chromosome 5 clone CTC-365E16, complete sequence Length = 122704 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacacaa 35 |||| |||||||||||||||||||| Sbjct: 74840 aaaatatatatgtatacacacacaa 74864
>gb|AF129076.2|AF129076 Homo sapiens chromosome 21 clone cosmid F0476 map 21q22.1, complete sequence Length = 42051 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacacaa 35 ||||||||||||||||||||| Sbjct: 15109 aatatatgtatacacacacaa 15129
>gb|AC068937.4|AC068937 Homo sapiens chromosome 8, clone RP11-490D16, complete sequence Length = 168302 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 1609 aaatatatgtatacacacaca 1589
>gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-131K21, complete sequence Length = 181602 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 aatatatgtatacacacacaa 35 ||||||||||||||||||||| Sbjct: 104652 aatatatgtatacacacacaa 104632
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 6 tttcgaaaaaatatatgtatacacacaca 34 |||||||||||||| ||||||||||||| Sbjct: 27232182 tttcgaaaaaatattagtatacacacaca 27232210
>gb|AC156800.2| Mus musculus BAC clone RP23-366B23 from chromosome 9, complete sequence Length = 190619 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 81510 gaaaaaatatatatatacacacaca 81534
>gb|AC154787.2| Mus musculus BAC clone RP24-468J5 from chromosome 17, complete sequence Length = 217844 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 169374 aaatatatgtatacacacaca 169354
>gb|AC093524.4| Homo sapiens chromosome 16 clone RP11-185O21, complete sequence Length = 135170 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 123439 aaatatatgtatacacacaca 123419
>ref|XM_216661.3| PREDICTED: Rattus norvegicus pumilio 2 (Drosophila) (predicted) (Pum2_predicted), mRNA Length = 6265 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 ||||||||||| ||||| || || || |||||||||||||| Sbjct: 3239 atcttctgaaccacatagttggcatattgatccttcatcat 3199
>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence Length = 110085 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||| |||||||||||||||||||| Sbjct: 54679 gaaataatatatgtatacacacaca 54655
>gb|AC140052.4| Mus musculus BAC clone RP23-346E11 from chromosome 15, complete sequence Length = 210091 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 33695 aaatatatgtatacacacaca 33715
>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence Length = 141894 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||| |||||||||||||||||||| Sbjct: 78674 gaaataatatatgtatacacacaca 78650
>dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, map 22, complete sequences Length = 220133 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 25301 aaatatatgtatacacacaca 25281
>dbj|BS000171.1| Pan troglodytes chromosome 22 clone:PTB-086M04, map 22, complete sequences Length = 218680 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 217987 aaatatatgtatacacacaca 217967
>dbj|BS000210.2| Pan troglodytes chromosome 22 clone:RP43-018H16, map 22, complete sequences Length = 148120 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 aaatttattttggctcatggt 653 ||||||||||||||||||||| Sbjct: 1982 aaatttattttggctcatggt 1962
>dbj|BS000224.1| Pan troglodytes chromosome 22 clone:PTB-030G10, map 22, complete sequences Length = 155241 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacacaa 35 ||||||||||||||||||||| Sbjct: 104688 aatatatgtatacacacacaa 104708
>dbj|BS000109.1| Pan troglodytes chromosome 22 clone:RP43-150L08, map 22, complete sequences Length = 157620 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 132019 aaatatatgtatacacacaca 131999
>ref|XM_318367.2| Anopheles gambiae str. PEST ENSANGP00000002715 (ENSANGG00000002250), partial mRNA Length = 2316 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 483 atcttctgaacaacataattagcgtactgatccttcatcat 523 |||||||| || || || || |||||||||||||||||||| Sbjct: 1880 atcttctgtaccacgtagttcgcgtactgatccttcatcat 1840
>gb|AC003998.1|AC003998 Human PAC clone RP1-161J9 from 5q31, complete sequence Length = 138965 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 31569 aaatatatgtatacacacaca 31549
>gb|AC154718.2| Mus musculus BAC clone RP24-370G12 from 14, complete sequence Length = 182043 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 aaatttattttggctcatggt 653 ||||||||||||||||||||| Sbjct: 97378 aaatttattttggctcatggt 97358
>emb|AL163246.2|HS21C046 Homo sapiens chromosome 21 segment HS21C046 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacacaa 35 ||||||||||||||||||||| Sbjct: 260669 aatatatgtatacacacacaa 260689
>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human) Length = 204955 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 66036 aaatatatgtatacacacaca 66056
>emb|BX897716.9| Zebrafish DNA sequence from clone DKEY-177F24 in linkage group 18, complete sequence Length = 123512 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 104757 aaatatatgtatacacacaca 104737
>gb|AF124731.2|AF124731 Homo sapiens chromosome 21q22.1 PAC A20292 containing BACH-1 gene, complete sequence Length = 107898 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 50147 aaatatatgtatacacacaca 50127
>gb|AC006409.2|AC006409 Homo sapiens Chromosome 11q12.2 PAC clone pDJ52b24 containing homology to human acidic ribosomal phosphoprotein PO cds, complete sequence Length = 114339 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 6 tttcgaaaaaatatatgtatacacacaca 34 |||| ||||||||||| |||||||||||| Sbjct: 70912 tttcaaaaaaatatatatatacacacaca 70884
>dbj|AP003559.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-794G24, complete sequence Length = 181439 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 6 tttcgaaaaaatatatgtatacacacaca 34 |||| ||||||||||| |||||||||||| Sbjct: 152267 tttcaaaaaaatatatatatacacacaca 152295
>dbj|AP003079.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-141E21, complete sequence Length = 166045 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacacaa 35 |||| |||||||||||||||||||| Sbjct: 15513 aaaacatatatgtatacacacacaa 15489
>dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, section 54/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 30777 aaatatatgtatacacacaca 30757 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 71460 aaaaaatatatatatacacacaca 71437
>dbj|AP001696.1| Homo sapiens genomic DNA, chromosome 21q, section 40/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 aaatttattttggctcatggt 653 ||||||||||||||||||||| Sbjct: 257803 aaatttattttggctcatggt 257783
>dbj|AP000245.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-14B21, complete sequence Length = 159903 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 138353 aaatatatgtatacacacaca 138333
>dbj|AP000241.2| Homo sapiens genomic DNA, chromosome 21q, clone:CMP21-T1073, complete sequence Length = 58384 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 18225 aaatatatgtatacacacaca 18205
>emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 in linkage group 14, complete sequence Length = 183670 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 28095 gaaaaaatatatatatacacacaca 28071
>emb|AL163152.4|CNS01RID Human chromosome 14 DNA sequence BAC R-98N22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 159772 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||| |||||||||||||| Sbjct: 68470 gaaaaaatatgtgtatacacacaca 68446
>gb|AC154176.5| Mus musculus BAC clone RP23-463F22 from chromosome 13, complete sequence Length = 193103 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 178267 aaatatatgtatacacacaca 178287
>gb|AC004383.1|AC004383 Human Chromosome X clone bWXD187, complete sequence Length = 156461 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 100757 gaaaaaatatatatatacacacaca 100781
>gb|AC146300.4| Mus musculus BAC clone RP23-38L11 from 3, complete sequence Length = 261825 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 132887 aaatatatgtatacacacaca 132867
>emb|CT010498.7| Mouse DNA sequence from clone RP23-105I10 on chromosome 13, complete sequence Length = 207035 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 14177 aaatatatgtatacacacaca 14197
>gb|U78027.1|HSU78027 Homo sapiens Bruton's tyrosine kinase (BTK), alpha-D-galactosidase A (GLA), L44-like ribosomal protein (L44L) and FTP3 (FTP3) genes, complete cds Length = 99014 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 gaaaaaatatatgtatacacacaca 34 |||||||||||| |||||||||||| Sbjct: 80917 gaaaaaatatatatatacacacaca 80893
>gb|U65744.1|HSU65744 Human chromosome 11 cosmid A9 including cellutagmin II gene, complete sequence Length = 40108 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 6 tttcgaaaaaatatatgtatacacacaca 34 |||| ||||||||||| |||||||||||| Sbjct: 2854 tttcaaaaaaatatatatatacacacaca 2826
>emb|AL035610.3|HSM17648 Homo sapiens chromosome 21 PAC LLNLP704M17648Q13, complete sequence Length = 154894 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacacaa 35 ||||||||||||||||||||| Sbjct: 109345 aatatatgtatacacacacaa 109365
>dbj|AP000207.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone f43D11-119B8, segment 5/12, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 4765 aaatatatgtatacacacaca 4745 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 45448 aaaaaatatatatatacacacaca 45425
>dbj|AP000202.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B355D16-T1073, segment 8/8, complete sequence Length = 26344 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 8120 aaatatatgtatacacacaca 8140
>dbj|AP001597.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1951E10, APP-D21S292 region, complete sequence Length = 176741 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 aaatttattttggctcatggt 653 ||||||||||||||||||||| Sbjct: 19754 aaatttattttggctcatggt 19734
>dbj|AP000097.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, B335D16-P10G11 region, segment 7/7 Length = 126344 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacaca 34 ||||||||||||||||||||| Sbjct: 108120 aaatatatgtatacacacaca 108140
>emb|AJ458182.1|PCO458182 Pyrus communis partial S gene for S-RNase, Sb allele, intron 1 Length = 708 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 aaaaatatatgtatacacacacaag 36 |||||||||| |||||||||||||| Sbjct: 215 aaaaatatatatatacacacacaag 191
>gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, complete sequence Length = 237423 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 56120 aatatatgtatacacacaca 56139
>gb|AC166253.18| Mus musculus BAC RP23-231M6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207999 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atatatgtatacacacacaa 35 |||||||||||||||||||| Sbjct: 20246 atatatgtatacacacacaa 20227
>gb|AC165229.7| Mus musculus chromosome 1, clone RP23-47K10, complete sequence Length = 218929 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 100535 aatatatgtatacacacaca 100554
>gb|AC161382.4| Mus musculus BAC clone RP23-25A17 from chromosome 9, complete sequence Length = 169123 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 155122 aaaaaatatatatatacacacaca 155145
>gb|AC158803.11| Mus musculus 10 BAC RP24-186E11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168941 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 84150 aaaaaatatatatatacacacaca 84173
>ref|XM_519681.1| PREDICTED: Pan troglodytes similar to putative protein product of HMFN0672 (LOC464080), mRNA Length = 2324 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 1970 aaaaaatatatatatacacacaca 1993
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 gctgctcgacccggctcgcg 386 |||||||||||||||||||| Sbjct: 3224388 gctgctcgacccggctcgcg 3224407
>gb|AC167559.2| Echinops telfairi, clone Echinops telfairi -24239157I1, complete sequence Length = 35266 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atatatgtatacacacacaa 35 |||||||||||||||||||| Sbjct: 29655 atatatgtatacacacacaa 29636
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 |||||| ||||||||||||||||| Sbjct: 973756 aaaaaaaatatgtatacacacaca 973779
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 1572357 aaaaaatatatatatacacacaca 1572334
>gb|AC137110.11| Mus musculus chromosome 7, clone RP23-399P8, complete sequence Length = 199827 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 634 aatttattttggctcatggt 653 |||||||||||||||||||| Sbjct: 13005 aatttattttggctcatggt 13024
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 caagtgaccctttacacggc 441 |||||||||||||||||||| Sbjct: 1565066 caagtgaccctttacacggc 1565085
>gb|AY016295.1|Y016287S09 Homo sapiens type V preprocollagen alpha 2 chain (COL5A2) gene, exons 34 through 52 and partial cds; and type III preprocollagen alpha 1 chain (COL3A1) gene, exons 2 through 52 Length = 70349 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 aaatatatgtatacacacac 33 |||||||||||||||||||| Sbjct: 17315 aaatatatgtatacacacac 17334
>gb|AC005373.1| Homo sapiens chromosome 5, PAC clone 45L14 (LBNL H91), complete sequence Length = 112220 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atatatgtatacacacacaa 35 |||||||||||||||||||| Sbjct: 15495 atatatgtatacacacacaa 15476
>gb|AC101738.16| Mus musculus chromosome 1, clone RP23-472N5, complete sequence Length = 183026 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 626 tgatgcaaaatttattttggctcatggt 653 |||| ||| ||||||||||||||||||| Sbjct: 82426 tgatacaagatttattttggctcatggt 82453
>gb|AC167244.2| Mus musculus BAC clone RP24-84C23 from chromosome 9, complete sequence Length = 235852 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 |||||| ||||||||||||||||| Sbjct: 90451 aaaaaaaatatgtatacacacaca 90474
>gb|AC167169.2| Mus musculus BAC clone RP24-257G14 from chromosome 16, complete sequence Length = 150549 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 634 aatttattttggctcatggt 653 |||||||||||||||||||| Sbjct: 54376 aatttattttggctcatggt 54357
>gb|AC115724.10| Mus musculus chromosome 3, clone RP23-20L18, complete sequence Length = 208154 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 90819 aatatatgtatacacacaca 90800
>gb|AC130659.11| Mus musculus chromosome 1, clone RP23-326C19, complete sequence Length = 172121 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 632 aaaatttattttggctcatg 651 |||||||||||||||||||| Sbjct: 143805 aaaatttattttggctcatg 143824
>gb|AC120390.12| Mus musculus chromosome 9, clone RP24-308L17, complete sequence Length = 138507 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 29169 aaaaaatatatatatacacacaca 29192
>gb|AC158542.2| Pan troglodytes BAC clone CH251-262O17 from chromosome y, complete sequence Length = 174274 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 91960 aaaaaatatatatatacacacaca 91937
>gb|AC116502.11| Mus musculus chromosome 13, clone RP24-300G17, complete sequence Length = 170654 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 113285 aatatatgtatacacacaca 113304
>gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 250421 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 acatatgtacaatcttcctt 194 |||||||||||||||||||| Sbjct: 193923 acatatgtacaatcttcctt 193904
>gb|AC146394.3| Pan troglodytes BAC clone RP43-55L17 from 7, complete sequence Length = 157809 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atatatgtatacacacacaa 35 |||||||||||||||||||| Sbjct: 44249 atatatgtatacacacacaa 44268
>gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosome 13, complete sequence Length = 187401 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 635 atttattttggctcatggtg 654 |||||||||||||||||||| Sbjct: 55316 atttattttggctcatggtg 55297
>gb|AC125196.4| Mus musculus BAC clone RP23-248M23 from chromosome 19, complete sequence Length = 196591 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atatatgtatacacacacaa 35 |||||||||||||||||||| Sbjct: 148825 atatatgtatacacacacaa 148806
>gb|AC115359.5| Mus musculus BAC clone RP23-190K20 from chromosome 2, complete sequence Length = 184634 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||||||||||||| ||||||||| Sbjct: 29523 aaaaaatatatgtacacacacaca 29500
>gb|AC127417.3| Mus musculus BAC clone RP23-459M2 from chromosome 10, complete sequence Length = 192814 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 635 atttattttggctcatggtg 654 |||||||||||||||||||| Sbjct: 47786 atttattttggctcatggtg 47805
>gb|AC147557.4| Mus musculus BAC clone RP23-452M8 from chromosome 14, complete sequence Length = 174133 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 157677 aatatatgtatacacacaca 157658
>gb|AC158215.3| Mus musculus chromosome 7, clone RP24-180E12, complete sequence Length = 156342 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 634 aatttattttggctcatggt 653 |||||||||||||||||||| Sbjct: 61316 aatttattttggctcatggt 61335
>gb|AC159225.4| Mus musculus chromosome 1, clone RP24-306F17, complete sequence Length = 168805 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 122607 aatatatgtatacacacaca 122588
>gb|AC137901.7| Mus musculus chromosome 6, clone RP23-81E17, complete sequence Length = 158419 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||| |||||||||||||||||| Sbjct: 68478 aaaaattatatgtatacacacaca 68455
>gb|AC117701.10| Mus musculus chromosome 16, clone RP23-463N5, complete sequence Length = 170497 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 114505 aatatatgtatacacacaca 114486
>gb|AY434892.1| Felis catus microsatellite FCA908 sequence Length = 395 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||| ||||||||||||||||||| Sbjct: 305 aaaatatatatgtatacacacaca 282
>gb|AC144522.12| Homo sapiens 12 BAC RP11-481J8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163515 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 136467 aatatatgtatacacacaca 136448
>gb|AC110175.14| Mus musculus chromosome 12, clone RP23-124B21, complete sequence Length = 242870 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 222203 aatatatgtatacacacaca 222184
>gb|AC128670.3| Mus musculus BAC clone RP23-137H4 from chromosome 13, complete sequence Length = 173020 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 99352 aaaaaatatatatatacacacaca 99329
>gb|AC147144.2| Pan troglodytes BAC clone CH251-278J22 from Y, complete sequence Length = 178957 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 175069 aaaaaatatatatatacacacaca 175046
>gb|AY226577.1| Mus musculus SET domain ERG-associated histone methyltransferase (Setdb1) gene, complete cds; alternatively spliced Length = 35880 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 7768 aaaaaatatatatatacacacaca 7791
>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence Length = 233904 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 108457 aaaaaatatatatatacacacaca 108480
>gb|AC138116.4| Mus musculus BAC clone RP24-242H5 from chromosome 15, complete sequence Length = 164014 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 89546 aatatatgtatacacacaca 89565
>emb|CT010432.7| Mouse DNA sequence from clone RP23-337G13 on chromosome 12, complete sequence Length = 207186 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 74698 aatatatgtatacacacaca 74717
>emb|BX928750.9| Zebrafish DNA sequence from clone DKEY-162P13 in linkage group 6, complete sequence Length = 178487 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 155849 aaaaaatatatatatacacacaca 155826
>emb|CT010581.10| Mouse DNA sequence from clone RP23-104J14 on chromosome 16, complete sequence Length = 218225 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 31926 aaaaaatatatatatacacacaca 31903
>emb|BX908756.12| Zebrafish DNA sequence from clone CH211-190D13 in linkage group 1, complete sequence Length = 134952 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 28661 aaaaaatatatatatacacacaca 28638
>gb|AC146275.2| Pan troglodytes BAC clone RP43-30A5 from 7, complete sequence Length = 179711 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 5153 aaaaaatatatatatacacacaca 5176
>gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, complete sequence Length = 194593 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aatatatgtatacacacaca 34 |||||||||||||||||||| Sbjct: 182348 aatatatgtatacacacaca 182367
>emb|CR790381.6| Zebrafish DNA sequence from clone DKEY-202K24 in linkage group 3, complete sequence Length = 93389 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 |||| ||||||||||||||||||| Sbjct: 78765 aaaacatatatgtatacacacaca 78742
>gb|AC115124.6| Mus musculus BAC clone RP24-349M22 from chromosome 18, complete sequence Length = 137371 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 48000 aaaaaatatatatatacacacaca 47977
>gb|AC132580.2| Mus musculus BAC clone RP24-388H18 from chromosome 9, complete sequence Length = 127200 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atatatgtatacacacacaa 35 |||||||||||||||||||| Sbjct: 79932 atatatgtatacacacacaa 79951
>gb|AC125044.3| Mus musculus BAC clone RP23-348B10 from chromosome 17, complete sequence Length = 222615 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atatatgtatacacacacaa 35 |||||||||||||||||||| Sbjct: 137647 atatatgtatacacacacaa 137666
>gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosome 18, complete sequence Length = 198519 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 62938 aaaaaatatatatatacacacaca 62961
>gb|AC093126.2| Papio anubis clone RP41-231J21, complete sequence Length = 181792 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaaaatatatgtatacacacaca 34 ||||||||||| |||||||||||| Sbjct: 15165 aaaaaatatatatatacacacaca 15188
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atatatgtatacacacacaa 35 |||||||||||||||||||| Sbjct: 14488 atatatgtatacacacacaa 14507 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,888,653 Number of Sequences: 3902068 Number of extensions: 6888653 Number of successful extensions: 213581 Number of sequences better than 10.0: 540 Number of HSP's better than 10.0 without gapping: 541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 211176 Number of HSP's gapped (non-prelim): 2396 length of query: 663 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 640 effective length of database: 17,143,297,704 effective search space: 10971710530560 effective search space used: 10971710530560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
