ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal26e14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR847537.9| Zebrafish DNA sequence from clone DKEYP-79B2 in linkage group 3, complete sequence Length = 144825 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 598 ctgcccatgtcctcctcgtccagc 621 |||||||||||||||||||||||| Sbjct: 108767 ctgcccatgtcctcctcgtccagc 108790
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 617 ccagcagcagcgacaggatcgcg 639 ||||||||||||||||||||||| Sbjct: 29573 ccagcagcagcgacaggatcgcg 29551
>emb|CR759941.1| Rat DNA sequence from clone RP32-551O16 on chromosome Y, complete sequence Length = 174940 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 384 tgcctctctgtccatctgtctc 405 |||||||||||||||||||||| Sbjct: 58492 tgcctctctgtccatctgtctc 58513
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 585 cgcctcggcgatgctgcccatg 606 |||||||||||||||||||||| Sbjct: 519323 cgcctcggcgatgctgcccatg 519302
>gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, complete sequence Length = 171048 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 tctgtctccatgcctctgcaa 418 ||||||||||||||||||||| Sbjct: 148463 tctgtctccatgcctctgcaa 148443
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 585 cgcctcggcgatgctgcccat 605 ||||||||||||||||||||| Sbjct: 3433926 cgcctcggcgatgctgcccat 3433906
>ref|XM_515281.1| PREDICTED: Pan troglodytes similar to Transcription factor SOX-11 (LOC459004), mRNA Length = 1188 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 cctcctcgtccagcagcagcg 628 ||||||||||||||||||||| Sbjct: 800 cctcctcgtccagcagcagcg 820
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 610 tcctcgtccagcagcagcgac 630 ||||||||||||||||||||| Sbjct: 2169552 tcctcgtccagcagcagcgac 2169572
>gb|AC120863.9| Mus musculus chromosome 7, clone RP23-84H3, complete sequence Length = 241742 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 tctgtctccatgcctctgcaa 418 ||||||||||||||||||||| Sbjct: 160792 tctgtctccatgcctctgcaa 160812
>gb|AC135669.5| Mus musculus BAC clone RP23-360L22 from chromosome 10, complete sequence Length = 194398 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 23 acagttttattttcttattcttaca 47 ||||||||||||| ||||||||||| Sbjct: 140408 acagttttattttattattcttaca 140384
>gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, complete sequence Length = 178077 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 catgcctctctgtccatctgt 402 ||||||||||||||||||||| Sbjct: 162201 catgcctctctgtccatctgt 162181
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 607 tcctcctcgtccagcagcagc 627 ||||||||||||||||||||| Sbjct: 2558792 tcctcctcgtccagcagcagc 2558812
>emb|CR388052.29| Zebrafish DNA sequence from clone CH211-178J18 in linkage group 8, complete sequence Length = 162276 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 21 aaacagttttattttcttattcttacagg 49 ||||||||||||| | ||||||||||||| Sbjct: 125084 aaacagttttattctgttattcttacagg 125056
>emb|AL353596.13| Human DNA sequence from clone CTA-212D2 on chromosome 6 Contains the 5' end of the HBS1L gene for HBS1-like (S. cerevisiae) (KIAA1038, EFRS) and a novel gene, complete sequence Length = 108329 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 aatctcatttcatttgttaag 469 ||||||||||||||||||||| Sbjct: 4949 aatctcatttcatttgttaag 4929
>emb|AL158210.12| Human DNA sequence from clone RP11-554I8 on chromosome 10 Contains two novel genes, complete sequence Length = 134826 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 cagttttattttcttattctt 44 ||||||||||||||||||||| Sbjct: 22891 cagttttattttcttattctt 22871
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 534 ctcgtcgccgcagtccccgat 554 ||||||||||||||||||||| Sbjct: 3217637 ctcgtcgccgcagtccccgat 3217657
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 616 tccagcagcagcgacaggatcgcgt 640 |||||||||||||||||| |||||| Sbjct: 1611675 tccagcagcagcgacaggttcgcgt 1611699
>ref|NM_003108.3| Homo sapiens SRY (sex determining region Y)-box 11 (SOX11), mRNA Length = 8737 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 cctcctcgtccagcagcagcg 628 ||||||||||||||||||||| Sbjct: 1077 cctcctcgtccagcagcagcg 1097
>gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, complete sequence Length = 146978 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 tctgtctccatgcctctgcaa 418 ||||||||||||||||||||| Sbjct: 134880 tctgtctccatgcctctgcaa 134860
>gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, complete sequence Length = 164620 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 taccttgaaaacaccattttt 70 ||||||||||||||||||||| Sbjct: 87060 taccttgaaaacaccattttt 87080
>gb|AC140542.3| Homo sapiens chromosome 16 clone XXfos-89147F6, complete sequence Length = 37849 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 tgcctctctgtccatctgtct 404 ||||||||||||||||||||| Sbjct: 6684 tgcctctctgtccatctgtct 6664
>gb|AC137775.2| Homo sapiens chromosome 16 clone LA16c-466B3, complete sequence Length = 35828 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 tgcctctctgtccatctgtct 404 ||||||||||||||||||||| Sbjct: 11234 tgcctctctgtccatctgtct 11214
>gb|AC108025.4| Homo sapiens BAC clone RP11-38F5 from 2, complete sequence Length = 96880 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 cctcctcgtccagcagcagcg 628 ||||||||||||||||||||| Sbjct: 81961 cctcctcgtccagcagcagcg 81981
>emb|BX855590.3| Zebrafish DNA sequence from clone CH211-245N8, complete sequence Length = 179373 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 21 aaacagttttattttcttattcttacagg 49 ||||||||||||| | ||||||||||||| Sbjct: 151095 aaacagttttattctgttattcttacagg 151123
>gb|AC153847.7| Mus musculus 10 BAC RP23-286J11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187753 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 23 acagttttattttcttattcttaca 47 ||||||||||||| ||||||||||| Sbjct: 7670 acagttttattttattattcttaca 7646
>gb|AC007857.2|AC007857 Homo sapiens chromosome 16 clone RPCI-11_523L20, complete sequence Length = 147421 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 tgcctctctgtccatctgtct 404 ||||||||||||||||||||| Sbjct: 22230 tgcctctctgtccatctgtct 22250
>emb|CT573074.1| Kuenenia stuttgartiensis genome fragment KUST_B (2 of 5) Length = 132284 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 atacatcgtcgtgggagcaca 499 ||||||||||||||||||||| Sbjct: 122031 atacatcgtcgtgggagcaca 122051
>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete sequence Length = 258789 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 catgcctctctgtccatctgt 402 ||||||||||||||||||||| Sbjct: 148023 catgcctctctgtccatctgt 148043
>emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, complete sequence Length = 246777 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 aaacagttttattttcttatt 41 ||||||||||||||||||||| Sbjct: 146909 aaacagttttattttcttatt 146929
>gb|U23752.1|HSU23752 Human SOX-11 mRNA, complete cds Length = 1998 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 cctcctcgtccagcagcagcg 628 ||||||||||||||||||||| Sbjct: 1097 cctcctcgtccagcagcagcg 1117
>dbj|AB028641.1| Homo sapiens mRNA for SOX11, complete cds Length = 8743 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 cctcctcgtccagcagcagcg 628 ||||||||||||||||||||| Sbjct: 1077 cctcctcgtccagcagcagcg 1097
>gb|AC153488.1| Tribolium castaneum BAC T.cast_C24H10 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 40580 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aatggtcaaatttcatattt 133 |||||||||||||||||||| Sbjct: 12049 aatggtcaaatttcatattt 12030
>gb|AC167537.7| Mus musculus chromosome 8, clone RP23-99B10, complete sequence Length = 201791 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cttgaaaacaccatttttga 72 |||||||||||||||||||| Sbjct: 94591 cttgaaaacaccatttttga 94572
>gb|AC152927.1| Tribolium castaneum BAC T.cast_C19N19 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 137018 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aatggtcaaatttcatattt 133 |||||||||||||||||||| Sbjct: 41757 aatggtcaaatttcatattt 41776
>ref|NM_021776.1| Rattus norvegicus endothelin converting enzyme-like 1 (Ecel1), mRNA Length = 7798 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 539 cgccgcagtccccgatgacctcca 562 ||||||||||| |||||||||||| Sbjct: 733 cgccgcagtcctcgatgacctcca 710
>gb|AC120871.12| Mus musculus chromosome 16, clone RP23-121E8, complete sequence Length = 218995 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gcctctctgtccatctgtct 404 |||||||||||||||||||| Sbjct: 214660 gcctctctgtccatctgtct 214679
>gb|AC004508.1| Homo sapiens chromosome 21, P1 clone LBL#3 (LBNL H09), complete sequence Length = 71230 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ctccttgtctccatgcctct 390 |||||||||||||||||||| Sbjct: 70093 ctccttgtctccatgcctct 70112
>gb|AC134443.3| Mus musculus BAC clone RP24-107B13 from chromosome 8, complete sequence Length = 182604 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 cttgaaaacaccatttttga 72 |||||||||||||||||||| Sbjct: 173758 cttgaaaacaccatttttga 173777
>gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome 5, complete sequence Length = 187269 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atgctccctgttggccaggg 324 |||||||||||||||||||| Sbjct: 181519 atgctccctgttggccaggg 181500
>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0682E05, complete sequence Length = 162223 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 accaatttttctctccatga 438 |||||||||||||||||||| Sbjct: 113614 accaatttttctctccatga 113595
>emb|CT010512.8| Mouse DNA sequence from clone RP23-283M18 on chromosome 16, complete sequence Length = 202415 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gcctctctgtccatctgtct 404 |||||||||||||||||||| Sbjct: 177565 gcctctctgtccatctgtct 177584
>ref|XM_387869.1| Gibberella zeae PH-1 chromosome 4 predicted protein (FG07693.1) partial mRNA Length = 1434 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 catcaacacgatgattccat 235 |||||||||||||||||||| Sbjct: 1318 catcaacacgatgattccat 1337
>gb|AC129592.5| Mus musculus BAC clone RP24-86A6 from chromosome 3, complete sequence Length = 186218 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 tgtccatctgtctccatgcc 411 |||||||||||||||||||| Sbjct: 22733 tgtccatctgtctccatgcc 22714
>gb|AC124487.3| Mus musculus BAC clone RP23-452B18 from chromosome 19, complete sequence Length = 195185 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 gtctccatgcctctctgtccatct 400 ||||||||||||||||| |||||| Sbjct: 28303 gtctccatgcctctctgcccatct 28280
>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence Length = 250147 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 taaacagttttattttctta 39 |||||||||||||||||||| Sbjct: 104160 taaacagttttattttctta 104179
>gb|AC122261.2| Mus musculus BAC clone RP23-187F24 from 15, complete sequence Length = 223801 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gcctctctgtccatctgtct 404 |||||||||||||||||||| Sbjct: 153363 gcctctctgtccatctgtct 153382
>gb|AC122202.4| Mus musculus BAC clone RP23-68P6 from 19, complete sequence Length = 234448 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 gtctccatgcctctctgtccatct 400 ||||||||||||||||| |||||| Sbjct: 227422 gtctccatgcctctctgcccatct 227399
>emb|AL163285.2|HS21C085 Homo sapiens chromosome 21 segment HS21C085 Length = 340000 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ctccttgtctccatgcctct 390 |||||||||||||||||||| Sbjct: 201845 ctccttgtctccatgcctct 201864
>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence Length = 146386 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tgaaaacaccatttttgatt 74 |||||||||||||||||||| Sbjct: 31327 tgaaaacaccatttttgatt 31308
>gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 293757 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acaaagaacacaacaatggt 119 |||||||||||||||||||| Sbjct: 239795 acaaagaacacaacaatggt 239814
>emb|AL773524.13| Human DNA sequence from clone RP11-250H24 on chromosome 9 Contains a calponin 2 (CNN2) pseudogene and a novel pseudogene, complete sequence Length = 125622 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 76174 gttttattttcttattctta 76193
>emb|AL669942.7| Human DNA sequence from clone RP11-399F4 on chromosome 9 Contains two novel psuedogenes, a calponin 2 (CNN2) psuedogene and a novel gene, complete sequence Length = 87140 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 41952 gttttattttcttattctta 41933
>emb|AL591441.11| Human DNA sequence from clone RP11-459O16 on chromosome 9 Contains a novel pseudogene (LOC283464), a calponin 2 (CNN2) pseudogene, a novel zinc finger protein pseudogene, a pseudogene similar to part of cytochrome P450 family protein, a novel pseudogene, a pseudogene similar to part of sorting nexin associated golgi protein 1 (SNAG1) and a melanoma antigen (LOC51152) pseudogene, complete sequence Length = 162441 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 83077 gttttattttcttattctta 83058
>emb|AL591471.8| Human DNA sequence from clone RP11-341A11 on chromosome 9 Contains a calponin 2 pseudogene (CNN2) and a novel pseudogene, complete sequence Length = 131871 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 102039 gttttattttcttattctta 102020
>emb|AL442124.6| Human DNA sequence from clone RP11-37D8 on chromosome 6 Contains part of the gene for smooth muscle cell associated protein 2 (SMAP2) or secreted modular calcium binding protein 2 (SMOC2), complete sequence Length = 45725 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 atggtcaaatttcatatttagaca 138 |||| ||||||||||||||||||| Sbjct: 23421 atgggcaaatttcatatttagaca 23398
>emb|AL158822.19| Human DNA sequence from clone RP11-100C15 on chromosome 9q34.2-34.3 Contains the 3' end of a novel gene containing DKFZp434G2311, the KCNT1 gene for member 1 of the potassium channel subfamily T, the 3' end of a novel gene, part of the gene for a novel protein similar to mouse RIKEN 9230102I19 (9230102I19RIK) and nine CpG islands, complete sequence Length = 187336 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 aaacagttttattttcttattctt 44 |||||||||||||||||| ||||| Sbjct: 40151 aaacagttttattttctttttctt 40174
>emb|AL136317.5| Human DNA sequence from clone RP11-15E1 on chromosome 9 Contains a calponin 2 (CNN2) pseudogene, a novel pseudogene, a novel gene similar to aquaporin 7 (AQP7) and a CpG island, complete sequence Length = 166426 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 29817 gttttattttcttattctta 29836
>emb|AL035667.12|HS805C22 Human DNA sequence from clone RP4-805C22 on chromosome 20q13.2-13.32 Contains the 3' end of the gene for downstream of tyrosine kinase 5 (DOK5) protein, complete sequence Length = 135391 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ctgtctccatgcctctgcaa 418 |||||||||||||||||||| Sbjct: 7907 ctgtctccatgcctctgcaa 7926
>gb|AC063918.21| Homo sapiens 3 BAC RP11-49C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97001 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 attaaaatatattatcatgccata 278 ||||||| |||||||||||||||| Sbjct: 16290 attaaaacatattatcatgccata 16313
>gb|AF423755.1| HIV-1 isolate X254 from Spain, complete genome Length = 8963 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 35 tcttattcttacaggtaccttgaaaaca 62 |||||||||||||||||| |||| |||| Sbjct: 8211 tcttattcttacaggtacgttgagaaca 8184
>gb|AC163742.4| Mus musculus BAC clone RP23-383K19 from chromosome 14, complete sequence Length = 199109 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cctctctgtccatctgtctc 405 |||||||||||||||||||| Sbjct: 18640 cctctctgtccatctgtctc 18621
>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92 Length = 112067 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 taaacagttttattttctta 39 |||||||||||||||||||| Sbjct: 26425 taaacagttttattttctta 26444
>emb|AL137070.9| Human DNA sequence from clone RP11-251O17 on chromosome 9 Contains 2 calponin 2 (CNN2) pseudogenes, a gene for a novel protein similar to aquaporin 7 (AQP7), part of gene for a novel protein similar to methylenetetrahydrofolate dehydrogenase(NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase (MTHFD1) and a CpG island, complete sequence Length = 170237 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 35236 gttttattttcttattctta 35255
>emb|AL035708.2|ATT5J17 Arabidopsis thaliana DNA chromosome 4, BAC clone T5J17 (ESSA project) Length = 118267 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 taaacagttttattttctta 39 |||||||||||||||||||| Sbjct: 36992 taaacagttttattttctta 37011
>emb|AL023860.2|SPCC162 S.pombe chromosome III cosmid c162 Length = 37960 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 acaacaatggtcaaatttca 128 |||||||||||||||||||| Sbjct: 10710 acaacaatggtcaaatttca 10729
>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3, complete sequence Length = 212865 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ctccttgtctccatgcctct 390 |||||||||||||||||||| Sbjct: 62348 ctccttgtctccatgcctct 62367
>emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 map 22q22.2-q22.3, complete sequence Length = 164591 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ctccttgtctccatgcctct 390 |||||||||||||||||||| Sbjct: 145616 ctccttgtctccatgcctct 145635
>gb|AC160984.3| Mus musculus BAC clone RP23-260C12 from chromosome 14, complete sequence Length = 206110 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 cctctctgtccatctgtctc 405 |||||||||||||||||||| Sbjct: 70765 cctctctgtccatctgtctc 70784
>emb|BX511173.6| Zebrafish DNA sequence from clone DKEY-278K10, complete sequence Length = 163074 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 caactttaaatgtactttta 99 |||||||||||||||||||| Sbjct: 127873 caactttaaatgtactttta 127854
>dbj|AB026293.1| Rattus norvegicus DINE mRNA for metallopeptidase, complete cds Length = 7798 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 539 cgccgcagtccccgatgacctcca 562 ||||||||||| |||||||||||| Sbjct: 733 cgccgcagtcctcgatgacctcca 710
>dbj|AB023896.1| Rattus norvegicus DINE mRNA for metallopeptidase, complete cds Length = 2476 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 539 cgccgcagtccccgatgacctcca 562 ||||||||||| |||||||||||| Sbjct: 690 cgccgcagtcctcgatgacctcca 667
>gb|AC023745.3| Drosophila melanogaster X BAC RP98-26N1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179312 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 tcctcctcgtccagcagcag 626 |||||||||||||||||||| Sbjct: 34814 tcctcctcgtccagcagcag 34795
>gb|AC183386.2| Pan troglodytes BAC clone CH251-223N18 from chromosome 9, complete sequence Length = 138215 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 27056 gttttattttcttattctta 27075
>ref|NM_132432.1| Drosophila melanogaster CG2186-RA (CG2186), mRNA Length = 4449 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 tcctcctcgtccagcagcag 626 |||||||||||||||||||| Sbjct: 3204 tcctcctcgtccagcagcag 3185
>gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosome 13, complete sequence Length = 185090 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ctcatatattcccaaacaga 178 |||||||||||||||||||| Sbjct: 52951 ctcatatattcccaaacaga 52932
>gb|BT023500.1| Drosophila melanogaster LD29862 full insert cDNA Length = 4423 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 tcctcctcgtccagcagcag 626 |||||||||||||||||||| Sbjct: 3164 tcctcctcgtccagcagcag 3145
>ref|NM_001023225.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC162.09c), partial mRNA Length = 3162 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 acaacaatggtcaaatttca 128 |||||||||||||||||||| Sbjct: 1817 acaacaatggtcaaatttca 1836
>gb|AC009252.9|AC009252 Drosophila melanogaster, chromosome 2L, region 38A-38A, BAC clone BACR22E16, complete sequence Length = 164361 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 tttttgattgtacacaactttaaa 89 ||||||||| |||||||||||||| Sbjct: 54805 tttttgattttacacaactttaaa 54782
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 accaatttttctctccatga 438 |||||||||||||||||||| Sbjct: 25623567 accaatttttctctccatga 25623548
>gb|AC073464.5| Homo sapiens BAC clone RP11-134N21 from 2, complete sequence Length = 168862 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 56998 gttttattttcttattctta 56979
>gb|AC087645.19| Homo sapiens chromosome 17, clone RP11-219G17, complete sequence Length = 209751 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tctccatgcctctctgtcca 397 |||||||||||||||||||| Sbjct: 69551 tctccatgcctctctgtcca 69532
>dbj|AB162945.1| Oryzias latipes NPR-C mRNA for natriuretic peptide receptor type-C, complete cds Length = 2153 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 605 tgtcctcctcgtccagcagcagcg 628 |||||||||||| ||||||||||| Sbjct: 610 tgtcctcctcgtacagcagcagcg 587
>gb|AC125292.4| Drosophila melanogaster X BAC CH223-5O10 (Children's Hospital Oakland Research Institute Drosophila melanogaster sheared DNA BAC Library) complete sequence Length = 95026 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 tcctcctcgtccagcagcag 626 |||||||||||||||||||| Sbjct: 90793 tcctcctcgtccagcagcag 90774
>gb|AC154552.2| Mus musculus BAC clone RP23-414P13 from 13, complete sequence Length = 187806 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ttttcttattcttacaggta 51 |||||||||||||||||||| Sbjct: 51853 ttttcttattcttacaggta 51872
>emb|AL845331.2| Human DNA sequence from clone RP11-407P15 on chromosome 9, complete sequence Length = 185111 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 155024 gttttattttcttattctta 155005
>gb|AE003664.3| Drosophila melanogaster chromosome 2L, section 73 of 83 of the complete sequence Length = 266287 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 tttttgattgtacacaactttaaa 89 ||||||||| |||||||||||||| Sbjct: 236239 tttttgattttacacaactttaaa 236216
>gb|AE003484.3| Drosophila melanogaster chromosome X, section 36 of 74 of the complete sequence Length = 314111 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 tcctcctcgtccagcagcag 626 |||||||||||||||||||| Sbjct: 89865 tcctcctcgtccagcagcag 89846
>gb|AC161051.2| Mus musculus BAC clone RP24-62J11 from chromosome 12, complete sequence Length = 181881 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ctgcaattaaaatatattat 269 |||||||||||||||||||| Sbjct: 137461 ctgcaattaaaatatattat 137480
>gb|AC110037.13| Mus musculus chromosome 5, clone RP23-257E17, complete sequence Length = 177428 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 atgctccctgttggccaggg 324 |||||||||||||||||||| Sbjct: 168481 atgctccctgttggccaggg 168500
>emb|AL844212.8| Mouse DNA sequence from clone RP23-29B20 on chromosome 4, complete sequence Length = 215351 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 ctccatgattgccactctaatctc 454 ||||||||||||||||||| |||| Sbjct: 151895 ctccatgattgccactctagtctc 151918
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 accaatttttctctccatga 438 |||||||||||||||||||| Sbjct: 25942237 accaatttttctctccatga 25942218
>emb|AL954343.10| Zebrafish DNA sequence from clone CH211-226B4, complete sequence Length = 198352 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 taatctcatttcatttgtta 467 |||||||||||||||||||| Sbjct: 152969 taatctcatttcatttgtta 152988
>emb|AL773578.1|HS265B9 Homo sapiens chromosome 21 from PAC RP1-265B9 map 21q22.2,D21S349-MX1, complete sequence Length = 157662 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ctccttgtctccatgcctct 390 |||||||||||||||||||| Sbjct: 128064 ctccttgtctccatgcctct 128083
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 tacaggtaccttgaaaacac 63 |||||||||||||||||||| Sbjct: 2379170 tacaggtaccttgaaaacac 2379151
>gb|AC140358.2| Mus musculus BAC clone RP24-234L7 from 3, complete sequence Length = 160295 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 tgtccatctgtctccatgcc 411 |||||||||||||||||||| Sbjct: 75421 tgtccatctgtctccatgcc 75402
>gb|AC148326.2| Mus musculus BAC clone RP24-377D18 from 6, complete sequence Length = 177503 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 taaacagttttattttctta 39 |||||||||||||||||||| Sbjct: 10496 taaacagttttattttctta 10477
>gb|AC124756.4| Mus musculus BAC clone RP23-115J2 from 6, complete sequence Length = 213833 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgtcttgctgtccaagatcc 159 |||||||||||||||||||| Sbjct: 136821 tgtcttgctgtccaagatcc 136802
>gb|L76979.1|YSPHMG1G Schizosaccharomyces pombe HMG-CoA reductase (hmg1+) gene, complete cds Length = 3162 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 acaacaatggtcaaatttca 128 |||||||||||||||||||| Sbjct: 1817 acaacaatggtcaaatttca 1836
>emb|AL078614.2|HS82L10 Homo sapiens chromosome 21 PAC RPCIP704L1082Q2, complete sequence Length = 112597 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gttttattttcttattctta 45 |||||||||||||||||||| Sbjct: 18223 gttttattttcttattctta 18204
>gb|AC168046.7| Mus musculus chromosome 8, clone RP24-335A7, complete sequence Length = 160659 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cttgaaaacaccatttttga 72 |||||||||||||||||||| Sbjct: 2469 cttgaaaacaccatttttga 2450
>dbj|AB049143.1| Candida parapsilosis top2 gene for type II DNA topoisomerase, partial cds, strain:IFO 1068 Length = 2339 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 168 tcccaaacagaggagcaactaataacaa 195 ||||||||| |||||||||||| ||||| Sbjct: 962 tcccaaacaaaggagcaactaacaacaa 989 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,099,143 Number of Sequences: 3902068 Number of extensions: 8099143 Number of successful extensions: 191662 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 190980 Number of HSP's gapped (non-prelim): 682 length of query: 660 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 637 effective length of database: 17,143,297,704 effective search space: 10920280637448 effective search space used: 10920280637448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
