>MED20_YEAST (P34162) RNA polymerase II mediator complex subunit 20 (Suppressor|
           of RNA polymerase B 2) (Hyper-recombination suppressor
           protein 2)
          Length = 210

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
 Frame = +1

Query: 46  SINKASYRLDLKNIPIAASRLQHTIIQCHKHASAQQQHLVPQVDTSKTNQLLLRLP---- 213
           SI+  +YR  +KN+P   S+L ++I     H   +Q  L+       T      +P    
Sbjct: 36  SIDFRTYRCSIKNLPADVSKLMYSIT---FHHHGRQTVLIKDNSAMVTTAAAADIPPALV 92

Query: 214 --GFCWGLPKT-KTVLVSKAQN---QLSMLAGDA 297
             G   G+P++  T+L SK  N   Q  ++ GDA
Sbjct: 93  FNGSSTGVPESIDTILSSKLSNIWMQRQLIKGDA 126

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 147  PTTAPSSPSRHFKNKPTFIAPSWLLLGASKDQDGT 251
            P T P+SPS H  + P FIAP   +L  + + + T
Sbjct: 2940 PPTLPASPSNHVSSLPPFIAPPGRVLDNAMNSNVT 2974

>FMT_MYCLE (Q9CCQ0) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 318

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 233 GSPQQKPGRRNKSWFVFEVSTWGTRCC 153
           G P  +P R N   FV E+S W   CC
Sbjct: 59  GIPLLRPARPNSPVFVSELSEWAPECC 85

>E13K_TOBAC (P52398) Glucan endo-1,3-beta-glucosidase, acidic isoform GL161|
           precursor (EC 3.2.1.39) ((1->3)-beta-glucan
           endohydrolase) ((1->3)-beta-glucanase)
           (Beta-1,3-endoglucanase)
          Length = 331

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 23  PNKEKS*VASTRPVIGWI*RTFRLRHPDYSTQLFNVTSMLQPNNST*FPKSTLQKQTNFY 202
           PN++   +A++    GW+    R   P    +  ++ + + P N+  + +  LQ   N Y
Sbjct: 66  PNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVY 125

Query: 203 CAFLASAG 226
            A LA+AG
Sbjct: 126 NA-LAAAG 132

>FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 614

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = +1

Query: 31  REILSSINKASYRLDLKNIPIAASRLQHTIIQCHKHASAQQQHLVPQVDTSKTNQLLLR- 207
           +EI  SI+K      L+  P+A SR++  +I  H+   A     +P  D  +   L+ R 
Sbjct: 402 KEIEDSIDKII--AGLEGSPLADSRIKR-LIAYHEAGHAVAATFLPHHDPVQKVTLIPRR 458

Query: 208 -LPGFCWGLPKTKTVLVSKAQ---NQLSMLAGDA 297
              G  W LP     LVSK+Q     ++ LAG A
Sbjct: 459 QAKGLTWFLPNDDQFLVSKSQILSKIIAALAGRA 492

>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)|
          Length = 1235

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 130  HKHASAQQQHLVPQVDT-SKTNQLLLRLPGFCWGLPKTKTVLVSKAQNQLSMLAGDAELL 306
            H H  A Q HL  +VDT ++TN  L R      G PK  T+   + Q Q       + L 
Sbjct: 826  HPHHHALQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRVREQQQQQQQQQQSSLH 885

Query: 307  EPQ 315
             P+
Sbjct: 886  PPE 888

>DNAE2_VIBVY (Q7MLY4) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1024

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 154 VVGLKHACDIE*LCAVIWMPQSECSSNPTYNWPC*CYSGFLFVRLGRNLHH 2
           V+ LKH       C +IW+P  + S      W        L++ L R+LHH
Sbjct: 113 VMSLKH-------CLLIWLPTGQTSDEQWATWLSRYQQSRLWLGLQRHLHH 156

>LIMK1_DROME (Q8IR79) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (dLIMK)|
          Length = 1257

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 138  CFSPTTA--PSSPSRHFKNKPTFIAPSWLLLGASKDQDGTCEQSSKST 275
            C SPT +  P SP++H   + T      L   A+  Q    +QSSK+T
Sbjct: 1124 CVSPTRSSRPGSPTKHLAQRHTAATAQRLTNAAATHQQQHQQQSSKTT 1171

>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)|
          Length = 1251

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 130 HKHASAQQQHLVPQVDT-SKTNQLLLRLPGFCWGLPKTKTVLVSKAQNQ 273
           H H    Q HL  +VDT ++TN  L R      G PK  T+  ++ Q Q
Sbjct: 829 HPHHQVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRAREQQQ 877

>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated|
           protein 10.5) (High sulfur keratin-associated protein
           10.5) (Keratin-associated protein 18-5)
           (Keratin-associated protein 18.5)
          Length = 271

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 123 SMSQACFSPTTAPSSPSRHFKNKPTFIAPSWLLLGASKDQDGTCEQSS 266
           S + +C  P    SSP +     P    P   L   SKD    C+QSS
Sbjct: 68  SCTPSCCQPACCASSPCQQACCVPVCCKPVCCLPTCSKDSSSCCQQSS 115

>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)|
          Length = 1242

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 130 HKHASAQQQHLVPQVDT-SKTNQLLLRLPGFCWGLPKTKTVLVSKAQNQ 273
           H H    Q HL  +VDT ++TN  L R      G PK  T+  ++ Q Q
Sbjct: 831 HPHHQVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRAREQQQ 879

>YLAA_BACSU (O07625) Hypothetical protein ylaA|
          Length = 646

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +1

Query: 79  KNIPIAASRLQHTIIQ------CHKHASAQQQHLVPQVDTSKTNQLL 201
           KNI +A SRLQH I+         K   + Q  +V   D+SKT + +
Sbjct: 509 KNISMANSRLQHQILSIFDARGSEKKKKSSQGDMVMYTDSSKTYEFV 555

>E13C_TOBAC (P23432) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
          Length = 351

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 23  PNKEKS*VASTRPVIGWI*RTFRLRHPDYSTQLFNVTSMLQPNNST*FPKSTLQKQTNFY 202
           PN++   +A++    GW+    R   P    +  ++ + + P+N+  + +  L    N Y
Sbjct: 90  PNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAMENVY 149

Query: 203 CAFLASAG 226
            A LA+AG
Sbjct: 150 NA-LAAAG 156

>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor|
           alphaA-CRYBP1) (Alpha A-crystallin-binding protein I)
           (Alpha A-CRYBP1)
          Length = 2688

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 94  AASRLQHTIIQCHKHASAQQQHLVPQVDTSKTNQLLLRLPGFCWGLPKTKTVLVSKAQ 267
           +  + +    QC  H  + Q HLVP++  S+ NQ L    GF   L    T+  +K +
Sbjct: 269 STQKSEQVAAQCVSHLYSSQDHLVPKL--SQQNQQLPGHLGFTGSLTNLHTLESTKLE 324

>MUTS_BACHD (Q9KAC0) DNA mismatch repair protein mutS|
          Length = 865

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
 Frame = +1

Query: 73  DLKNIPIAASRLQHTIIQCHKHASAQQQHL----------VPQVDTSKTNQLLLRLPGFC 222
           D+KN+ ++A   Q T++  HK    Q              +P V T +   LL  L G  
Sbjct: 732 DVKNVHVSAVEEQGTVVFLHKVVDGQADRSYGIYVAELAGLPNVVTERAETLLAELEGEK 791

Query: 223 WGLPKTKTVLVSKAQNQLSM 282
             +   K V  +    QLS+
Sbjct: 792 EIVASEKEVASTNEPTQLSL 811

>E13D_TOBAC (P23433) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
          Length = 351

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 23  PNKEKS*VASTRPVIGWI*RTFRLRHPDYSTQLFNVTSMLQPNNST*FPKSTLQKQTNFY 202
           PN++   +A++    GW+    R   P    +  ++ + + P N+  + +  L    N Y
Sbjct: 90  PNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMKNVY 149

Query: 203 CAFLASAG 226
            A LA+AG
Sbjct: 150 NA-LAAAG 156

>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)|
          Length = 1233

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 130 HKHASAQQQHLVPQVDT-SKTNQLLLRLPGFCWGLPKTKTVLVSKAQNQ 273
           H H    Q HL  +VDT ++TN  L R      G PK  T+   + Q Q
Sbjct: 826 HPHHHVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRVREQQQ 874


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,026,122
Number of Sequences: 219361
Number of extensions: 851178
Number of successful extensions: 2723
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2718
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)