ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal26d23 |
|---|---|
| Clone Library Name | barley_pub |
>WNT7A_PLEJO (P28138) Protein Wnt-7a (Fragment)| Length = 123 Score = 32.7 bits (73), Expect = 0.79 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +1 Query: 205 PTMAHNNKKLEPVFLSLAQSLAAVRTYHTTNIQQQKTPYKC---AVRQTISPLGHRCCST 375 P A NK+ P FL + + L+ ++ T + +K+P C V ++ G C T Sbjct: 35 PVRASRNKR--PTFLKIKKPLSYLKPMDTDLVYIEKSPNYCEEDPVTGSVGTQGRMCNKT 92 Query: 376 TRHSSSGD 399 +HSS D Sbjct: 93 AQHSSGCD 100
>GP110_MOUSE (Q8VEC3) G-protein coupled receptor 110 precursor| Length = 908 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Frame = -2 Query: 496 PPACYSRQGSCCTLRKG---GCCCSL*SAMQSSQFCHRS*SAELWSNIYAQE 350 PP+C Q +CC G C CSL QS FC R A++W E Sbjct: 112 PPSCLDPQ-NCCLHTTGPVPSCNCSLRGLRQSVNFCER---AKVWGTFEIDE 159
>RSP5_YEAST (P39940) E3 ubiquitin--protein ligase RSP5 (EC 6.3.2.-)| Length = 809 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +1 Query: 346 SPLGHRCCSTTRHSSSGDKIGSTASPTKDYNNNHPS 453 +P GH S+T SS+ G + S T++++ +HPS Sbjct: 147 APSGHTASSSTNTSSTTRTNGHSTSSTRNHSTSHPS 182
>RF1M_HUMAN (O75570) Peptide chain release factor 1, mitochondrial precursor| (MRF-1) Length = 445 Score = 30.4 bits (67), Expect = 3.9 Identities = 17/79 (21%), Positives = 38/79 (48%) Frame = +1 Query: 31 TRTWAT*ESCLEEIPHPNAKKISMNRFHSDCPSICLLLRAGNQQKENPSQKESNGKCRPT 210 ++ + T E CL+ IP + S+NR H++ + + + Q+ + +E C+ Sbjct: 83 SKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQ--EIQETEQAIEELESMCKSL 140 Query: 211 MAHNNKKLEPVFLSLAQSL 267 + K+L+ + L Q++ Sbjct: 141 NKQDEKQLQELALEERQTI 159
>YDB4_SCHPO (Q10357) Hypothetical protein C22E12.04 in chromosome I| Length = 297 Score = 30.4 bits (67), Expect = 3.9 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = -2 Query: 565 SIHEGNSMVWCWCGPLRAIDRHRPPACYSRQGSCCTLRKGGCC 437 S++EG+S C + +P C + SCC+ +K CC Sbjct: 218 SVNEGSSC----CSKKDSSPSEKPSCCSQEKKSCCSSKKPSCC 256
>LCE1C_HUMAN (Q5T751) Late cornified envelope protein 1C (Late envelope protein| 3) Length = 118 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 490 ACYSRQGSCCTLRKGGCCCSL*SAMQSSQFCHR 392 +C S G CC+ GGCC S + CHR Sbjct: 59 SCGSSSGGCCSSGGGGCCLS--HHRRRRSHCHR 89
>LCE1B_HUMAN (Q5T7P3) Late cornified envelope protein 1B (Late envelope protein| 2) (Small proline-rich-like epidermal differentiation complex protein 2A) Length = 118 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 490 ACYSRQGSCCTLRKGGCCCSL*SAMQSSQFCHR 392 +C S G CC+ GGCC S + CHR Sbjct: 59 SCGSSSGGCCSSGGGGCCLS--HHRRRRSHCHR 89
>ATF7_PONPY (Q5R9C9) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 483 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/78 (21%), Positives = 29/78 (37%) Frame = +1 Query: 112 HSDCPSICLLLRAGNQQKENPSQKESNGKCRPTMAHNNKKLEPVFLSLAQSLAAVRTYHT 291 H DCP L + + E G P + H++ LS+ + AV T Sbjct: 395 HKDCPVTALQKKTQGYLESPKESSEPTGSPAPVIQHSSATAPSNGLSVRSAAEAVATSVL 454 Query: 292 TNIQQQKTPYKCAVRQTI 345 T + Q+T ++ + Sbjct: 455 TQMASQRTELSMPIQSHV 472
>BUR2_YEAST (Q05949) Protein BUR2 (Bypass UAS requirement protein 2)| (Chromosome stability protein 4) Length = 395 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +1 Query: 385 SSSGD--KIGSTASPTKDYNNNHPSSKYNSCLVWSNMLEDGGDQWL 516 SSSGD K + PT + + SS +N+ +W +++E +QW+ Sbjct: 5 SSSGDVKKFQAVPKPTSNASPPPASSGFNARTLWPDLIETPENQWV 50
>ATF7_HUMAN (P17544) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 494 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/78 (21%), Positives = 29/78 (37%) Frame = +1 Query: 112 HSDCPSICLLLRAGNQQKENPSQKESNGKCRPTMAHNNKKLEPVFLSLAQSLAAVRTYHT 291 H DCP L + + E G P + H++ LS+ + AV T Sbjct: 406 HKDCPVTALQKKTQGYLESPKESSEPTGSPAPVIQHSSATAPSNGLSVRSAAEAVATSVL 465 Query: 292 TNIQQQKTPYKCAVRQTI 345 T + Q+T ++ + Sbjct: 466 TQMASQRTELSMPIQSHV 483
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +1 Query: 145 RAGNQQKENPSQKESNGKCRPTMAHNNKKLEPVFLSLAQ 261 RAG P K SN RP + NN+ V L+ AQ Sbjct: 348 RAGQDNGSKPEYKRSNANRRPPVDSNNRTKSSVALATAQ 386
>UCRP_BOVIN (O02741) Ubiquitin cross-reactive protein (Interferon-stimulated| gene product 17) (BoUCRP) Length = 153 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Frame = +1 Query: 295 NIQQQKTPYKCAVRQTISPLGHRCCSTTRHSSSGDKIGSTASPTKDYNNNHPSSKY---N 465 N + + +PY+ ++QT++ L + C R + + P D HP +Y Sbjct: 84 NDKGRSSPYEVQLKQTVAELKQQVCQKERVQADQFWLSFEGRPMDD---EHPLEEYGLMK 140 Query: 466 SCLVWSNMLEDGG 504 C V+ N+ GG Sbjct: 141 GCTVFMNLRLRGG 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,757,708 Number of Sequences: 219361 Number of extensions: 1786002 Number of successful extensions: 4665 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4447 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4660 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
